Miyakogusa Predicted Gene

Lj0g3v0046679.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0046679.1 Non Chatacterized Hit- tr|I1LHG1|I1LHG1_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,82.61,0.00000000000003,WD40 repeats,WD40 repeat;
WD_REPEATS_2,WD40 repeat; WD_REPEATS_REGION,WD40-repeat-containing
domain;,NODE_53714_length_1078_cov_116.121521.path1.1
         (873 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC72413 weakly similar to UniRef100_UPI0000196FB7 Clust...   571   e-162

>gnl|LJGI|TC72413 weakly similar to UniRef100_UPI0000196FB7 Cluster: transducin
           family protein / WD-40 repeat family protein; n=1;
           Arabidopsis thaliana|Rep: transducin family protein /
           WD-40 repeat family protein - Arabidopsis thaliana,
           partial (6%)
          Length = 523

 Score =  571 bits (288), Expect = e-162
 Identities = 291/292 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggagtggaccacgctgcagcatctggatctccgccacattggccgtggcgtcagaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 atggagtggaccacgctgcagcatctggatctccgccacattggccgtggcgtcagaccc 291

                                                                       
Query: 61  ttgcagcctcatgctgcttgcttccatcaccaccaggccctcgtcgccgtcgccattggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ttgcagcctcatgctgcttgcttccatcaccaccaggccctcgtcgccgtcgccattggt 351

                                                                       
Query: 121 acctacatcgttgaattagatgcattaacagggagcaagatttctgctcttggcgttggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 acctacatcgttgaattagatgcattaacagggagcaagatttctgctcttggcgttggt 411

                                                                       
Query: 181 gcgcccgttgttcgaatgtcttacagtcctacaagtgggcatactgtgattgcaattctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gcgcccgttgttcgaatgtcttacagtcctacaagtgggcatactgtgattgcaattctc 471

                                                               
Query: 241 caggattgtacaatacggtcttgtgattttgacttagagcaaacatgtgtgt 292
           |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 472 caggattgtacaatacggtcttgtgattttgacttaaagcaaacatgtgtgt 523