Miyakogusa Predicted Gene

Lj0g3v0044669.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0044669.1 Non Chatacterized Hit- tr|D8TGJ6|D8TGJ6_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,43.33,0.000000000000001,coiled-coil,NULL; seg,NULL;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL,CUFF.2073.1
         (828 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS362311 similar to UniRef100_Q1RSH7 Cluster: General t...   206   2e-52

>gnl|LJGI|FS362311 similar to UniRef100_Q1RSH7 Cluster: General transcription factor
           IIH component, related; n=1; Medicago truncatula|Rep:
           General transcription factor IIH component, related -
           Medicago truncatula (Barrel medic), partial (20%)
          Length = 754

 Score =  206 bits (104), Expect = 2e-52
 Identities = 152/168 (90%)
 Strand = Plus / Minus

                                                                       
Query: 635 accttattaataagactaggagactgaaagaggctatatcacaactatattctaaacttg 694
           ||||||||| ||||||   ||||||||||||||||||||||||| | || ||||||||||
Sbjct: 738 accttattagtaagacagcgagactgaaagaggctatatcacaaatttactctaaacttg 679

                                                                       
Query: 695 aggagataaaggtatctgcacactttgacctgcggcatcaggtttcagtttttgtccatc 754
           |||| ||||||||||||||||| |  ||||||||||||||||||||  || |||||||||
Sbjct: 678 aggaaataaaggtatctgcacagtcagacctgcggcatcaggtttcgcttattgtccatc 619

                                                           
Query: 755 ctatgcagcagtctttggaggctgccttgttacattatgatgctgaca 802
           ||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 618 ctatgcagcaggctttggatgctgccttgttacattatgatgctgaca 571