Miyakogusa Predicted Gene

Lj0g3v0042119.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0042119.1 NODE_62800_length_1469_cov_13.153166.path2.1
         (984 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS320258 weakly similar to UniRef100_Q01963 Cluster: S-...   131   9e-30
gnl|LJGI|FS326382 weakly similar to UniRef100_A7P155 Cluster: Ch...    68   1e-10
gnl|LJGI|FS319460 weakly similar to UniRef100_A7P197 Cluster: Ch...    54   2e-06

>gnl|LJGI|FS320258 weakly similar to UniRef100_Q01963 Cluster: S-locus receptor kinase
           precursor; n=2; Brassica napus|Rep: S-locus receptor
           kinase precursor - Brassica napus var. napus, partial
           (14%)
          Length = 744

 Score =  131 bits (66), Expect = 9e-30
 Identities = 108/122 (88%)
 Strand = Plus / Plus

                                                                       
Query: 19  tggcagagctttgatcatccttgtgatacagtgttaccaggaatgaagattggatgggac 78
           |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 575 tggcagagctttgatcatccttgtgatacactgttaccaggtatgaagattggatgggac 634

                                                                       
Query: 79  agaaaaactggtcttagcaagcgtctcgtcgcctggaaaaactgggatgatccatcttca 138
           |||||| ||||  ||| || || | ||   || |||||||| ||||||||||||||||||
Sbjct: 635 agaaaatctggaattaacaggcttttcactgcttggaaaaattgggatgatccatcttca 694

             
Query: 139 gg 140
           ||
Sbjct: 695 gg 696


>gnl|LJGI|FS326382 weakly similar to UniRef100_A7P155 Cluster: Chromosome chr19
           scaffold_4, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr19 scaffold_4, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (17%)
          Length = 764

 Score = 67.9 bits (34), Expect = 1e-10
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                     
Query: 18  gtggcagagctttgatcatccttgtgatacagtgttaccaggaatgaagattggatgg 75
           |||||||||||||||| |||||||||||||  |  || ||||||||||||||||||||
Sbjct: 443 gtggcagagctttgattatccttgtgatacttttctagcaggaatgaagattggatgg 500


>gnl|LJGI|FS319460 weakly similar to UniRef100_A7P197 Cluster: Chromosome chr19
           scaffold_4, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr19 scaffold_4, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (15%)
          Length = 729

 Score = 54.0 bits (27), Expect = 2e-06
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 19  tggcagagctttgatcatccttgtgatacagtgttaccaggaatgaa 65
           ||||||||||||||  | |||||||| ||| ||||||||||||||||
Sbjct: 479 tggcagagctttgactacccttgtgacacactgttaccaggaatgaa 525