Miyakogusa Predicted Gene

Lj0g3v0040399.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0040399.1 tr|B9HGU6|B9HGU6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_562855 PE=4
SV=1,26.36,5e-19,PPR_2,Pentatricopeptide repeat; PPR,Pentatricopeptide
repeat; PPR: pentatricopeptide repeat domain,P,gene.g2926.t1.1
         (747 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS354787 weakly similar to UniRef100_A7QFI8 Cluster: Ch...   722   0.0  

>gnl|LJGI|FS354787 weakly similar to UniRef100_A7QFI8 Cluster: Chromosome chr8
           scaffold_88, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr8 scaffold_88, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (15%)
          Length = 709

 Score =  722 bits (364), Expect = 0.0
 Identities = 367/368 (99%)
 Strand = Plus / Minus

                                                                       
Query: 380 aggccggagatttaagtaaggctaagggggtaatgaaggagatggggttgaaaggtgttg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 aggccggagatttaagtaaggctaagggggtaatgaaggagatggggttgaaaggtgttg 650

                                                                       
Query: 440 agctcaacttgcatacatacaggattatgcttgatggtttggttggtaaagctgagattg 499
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 649 agctcaacttgcatacatacaggatcatgcttgatggtttggttggtaaagctgagattg 590

                                                                       
Query: 500 gtgaagcatctcttttgttggaggaaatgttgaagaagtgtttttatcctagatcttcaa 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gtgaagcatctcttttgttggaggaaatgttgaagaagtgtttttatcctagatcttcaa 530

                                                                       
Query: 560 catttgataatatcatatgttgcatgtgccaaaagggcttaattaacgaagcactagaat 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 catttgataatatcatatgttgcatgtgccaaaagggcttaattaacgaagcactagaat 470

                                                                       
Query: 620 tgatgaagaaaattgttgcaaaaagttttgctccaggagccagggcctgggaagctctgc 679
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tgatgaagaaaattgttgcaaaaagttttgctccaggagccagggcctgggaagctctgc 410

                                                                       
Query: 680 ttcttcattcgggatctgatctcacatattcagaaaccacgtttgctggcttgttcaacc 739
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ttcttcattcgggatctgatctcacatattcagaaaccacgtttgctggcttgttcaacc 350

                   
Query: 740 aaaattaa 747
           ||||||||
Sbjct: 349 aaaattaa 342