Miyakogusa Predicted Gene
- Lj0g3v0038839.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0038839.1 Non Chatacterized Hit- tr|C0PEC8|C0PEC8_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,27.37,5e-18,seg,NULL,
NODE_43026_length_1996_cov_110.660324.path1.1
(1845 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC69738 327 1e-88
gnl|LJGI|TC66007 similar to UniRef100_A7NV64 Cluster: Chromosome... 143 4e-33
gnl|LJGI|GO013223 similar to UniRef100_A7NV64 Cluster: Chromosom... 137 3e-31
>gnl|LJGI|TC69738
Length = 555
Score = 327 bits (165), Expect = 1e-88
Identities = 175/177 (98%), Gaps = 1/177 (0%)
Strand = Plus / Plus
Query: 1669 cttacagaagaggagataaatgccttctatcaggagtgcatgaagctgggcacaactaca 1728
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttacagaagaggagataa-tgccttctatcaggagtgcatgaagctgggcacaactaca 59
Query: 1729 ttaaagctatgtcagggaatgcagccaaagttgtccacattttttgaatcttatgccact 1788
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 60 ttaaagctatgtcagggaatgcagcccaagttgtccacattttttgaatcttatgccact 119
Query: 1789 aacttgcatggagctcctgctgaaacgagttcttctgactccagatctgaagcgtga 1845
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 aacttgcatggagctcctgctgaaacgagttcttctgactccagatctgaagcgtga 176
>gnl|LJGI|TC66007 similar to UniRef100_A7NV64 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (6%)
Length = 691
Score = 143 bits (72), Expect = 4e-33
Identities = 195/236 (82%)
Strand = Plus / Plus
Query: 1603 gatgaggaagaggctgcattccttcgttctcttggctgggaggaggattctggtgaggat 1662
|||||||| || |||||||| ||||||||||||||||||||||| |||| | |||||||
Sbjct: 194 gatgaggaggaagctgcatttcttcgttctcttggctgggaggaaaattcagatgaggat 253
Query: 1663 ggcggccttacagaagaggagataaatgccttctatcaggagtgcatgaagctgggcaca 1722
| || ||||||||||||||||| |||||||||||||||||||| | ||| ||| |
Sbjct: 254 gaaggtcttacagaagaggagatcaatgccttctatcaggagtgtaagaatttggatcct 313
Query: 1723 actacattaaagctatgtcagggaatgcagccaaagttgtccacattttttgaatcttat 1782
| ||||| || ||| ||||||| |||||||||||| |||||| || || |||||||||
Sbjct: 314 tccacattcaaactaagtcagggtatgcagccaaagctgtccaagttgttcgaatcttat 373
Query: 1783 gccactaacttgcatggagctcctgctgaaacgagttcttctgactccagatctga 1838
|| ||||| ||| |||||| |||||||| ||||||||||| ||||||||||
Sbjct: 374 gcatctaacctgcgcggagcttctgctgaattgagttcttctggtcccagatctga 429
>gnl|LJGI|GO013223 similar to UniRef100_A7NV64 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (11%)
Length = 624
Score = 137 bits (69), Expect = 3e-31
Identities = 183/221 (82%)
Strand = Plus / Plus
Query: 1603 gatgaggaagaggctgcattccttcgttctcttggctgggaggaggattctggtgaggat 1662
|||||||| || |||||||| ||||||||||||||||||||||| |||| | |||||||
Sbjct: 278 gatgaggaggaagctgcatttcttcgttctcttggctgggaggaaaattcagatgaggat 337
Query: 1663 ggcggccttacagaagaggagataaatgccttctatcaggagtgcatgaagctgggcaca 1722
| || ||||||||||||||||| |||||||||||||||||||| | ||| ||| |
Sbjct: 338 gaaggtcttacagaagaggagatcaatgccttctatcaggagtgtaagaatttggatcct 397
Query: 1723 actacattaaagctatgtcagggaatgcagccaaagttgtccacattttttgaatcttat 1782
| ||||| || ||| ||||||| |||||||||||| |||||| || || |||||||||
Sbjct: 398 tccacattcaaactaagtcagggtatgcagccaaagctgtccaagttgttcgaatcttat 457
Query: 1783 gccactaacttgcatggagctcctgctgaaacgagttcttc 1823
|| ||||| ||| |||||| |||||||| |||||||||
Sbjct: 458 gcatctaacctgcgcggagcttctgctgaattgagttcttc 498
Score = 99.6 bits (50), Expect = 6e-20
Identities = 164/200 (82%), Gaps = 4/200 (2%)
Strand = Plus / Plus
Query: 1350 ttctcaagtgcagagccggaatgctttcttcaatctcattaaaaagaaaactctcatgaa 1409
|||||||||||||||||| |||| || ||||||||||||||| |||||||| | |||||
Sbjct: 2 ttctcaagtgcagagccgaaatgatt-cttcaatctcattaagaagaaaacgttgatgaa 60
Query: 1410 ctcctc---agttcttccagaatctagcccagctgtttcatctcccttgatggacaaacc 1466
|||||| |||||||||||||||| ||||| | ||||| || |||| |||| ||| |
Sbjct: 61 ctcctctgcagttcttccagaatctggcccaacggtttcctcaccctcattggagaaatc 120
Query: 1467 tggtgaagtaaatatagaaccagttgccccccttgcaaatcctcaagatcttggaaacag 1526
||||||||||||||| ||| |||| ||| ||||| || | || ||||||||| |
Sbjct: 121 tggtgaagtaaatatggaaatagttagcccttctgcaagtcttgaatctcttggaaatgg 180
Query: 1527 tgctgaagtgactagcaatg 1546
||||||| ||||||||||||
Sbjct: 181 tgctgaactgactagcaatg 200