Miyakogusa Predicted Gene

Lj0g3v0038509.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0038509.1 Non Chatacterized Hit- tr|I1MMB7|I1MMB7_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max GN=G,63.36,0,no
description,NULL; no description,DNA-directed RNA polymerase, helix
hairpin domain;
coiled-coil,N,NODE_37037_length_3713_cov_14.511716.path1.1
         (2559 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|CB826632 similar to UniRef100_A7PAG7 Cluster: DNA-direc...   115   1e-24
gnl|LJGI|TC70388 similar to UniRef100_A7PAG7 Cluster: DNA-direct...    76   1e-12

>gnl|LJGI|CB826632 similar to UniRef100_A7PAG7 Cluster: DNA-directed RNA polymerase;
            n=1; Vitis vinifera|Rep: DNA-directed RNA polymerase -
            Vitis vinifera (Grape), partial (13%)
          Length = 520

 Score =  115 bits (58), Expect = 1e-24
 Identities = 58/58 (100%)
 Strand = Plus / Plus

                                                                      
Query: 2501 aagagatgtttgaggcagcaagaagtattatgggttggctaggtgattgtgcaaaggt 2558
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    aagagatgtttgaggcagcaagaagtattatgggttggctaggtgattgtgcaaaggt 58


>gnl|LJGI|TC70388 similar to UniRef100_A7PAG7 Cluster: DNA-directed RNA polymerase;
            n=1; Vitis vinifera|Rep: DNA-directed RNA polymerase -
            Vitis vinifera (Grape), partial (22%)
          Length = 1297

 Score = 75.8 bits (38), Expect = 1e-12
 Identities = 71/82 (86%)
 Strand = Plus / Plus

                                                                        
Query: 2336 gaaagttggtgaagcaaacagtgatgacatcagtctatggagtgacttacattggggccc 2395
            |||| ||||| ||||| ||||||||||||||||| ||||| || ||||||||||| || |
Sbjct: 11   gaaaattggttaagcagacagtgatgacatcagtatatggtgtcacttacattggagcac 70

                                  
Query: 2396 gagaccagatcaagaggaggtt 2417
            | || ||||| |||||||||||
Sbjct: 71   gggaacagataaagaggaggtt 92