Miyakogusa Predicted Gene
- Lj0g3v0035939.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0035939.1 CUFF.1593.1
(507 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BW594844 weakly similar to UniRef100_Q9FIC5 Cluster: Re... 854 0.0
gnl|LJGI|TC80101 420 e-117
gnl|LJGI|TC77787 398 e-110
gnl|LJGI|TC75105 56 2e-07
>gnl|LJGI|BW594844 weakly similar to UniRef100_Q9FIC5 Cluster: Retroelement pol
polyprotein-like; n=2; Arabidopsis thaliana|Rep:
Retroelement pol polyprotein-like - Arabidopsis thaliana
(Mouse-ear cress), partial (4%)
Length = 470
Score = 854 bits (431), Expect = 0.0
Identities = 455/463 (98%), Gaps = 5/463 (1%)
Strand = Plus / Plus
Query: 50 ctaagaactcttgtattatacaggatacgatttcctccaagatgattggacaagctaaag 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctaagaactcttgtattatacaggatacgatttcctccaagatgattggacaagctaaag 60
Query: 110 tttctcagagtctctactttcttgaggaacctaaaagaatctgtgttgcggtcactgatt 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttctcagagtctctactttcttgaggaacctaaaagaatctgtgttgcggtcactgatt 120
Query: 170 ggaatatccagaataagtttgttaacattgctgaaacagttcctggtacaaatggtagtc 229
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 121 ggaatatccaaaataagtttgttaacattgctgaaacagttcctggtaaaaatggtagtc 180
Query: 230 acccacaatttgatatgtggcattttagactcggacacccctccagtaaggttttacaac 289
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 181 acccacaatttgatatgtggcattttagactcggacacccctccagcaaggttttacaac 240
Query: 290 acatta-----ccaaaccactgtccactcccatggtgaagcctacatctactacagcttc 344
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acattagtaagccaaaccactgtccactcccatggtgaagcctacatctactacagcttc 300
Query: 345 tgacaacagcccttatcaagacattactagttatagaagactagttggacaattgcttta 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgacaacagcccttatcaagacattactagttatagaagactagttggacaattgcttta 360
Query: 405 tttaactactaccaggccagaaatttcctatgctgtccaacaacttagtcaacatatggc 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tttaactactaccaggccagaaatttcctatgctgtccaacaacttagtcaacatatggc 420
Query: 465 tgctcctaccaaccaacactatcaagctgctatcagggtcctc 507
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgctcctaccaaccaacactatcaagctgctatcagggtcctc 463
>gnl|LJGI|TC80101
Length = 1528
Score = 420 bits (212), Expect = e-117
Identities = 212/212 (100%)
Strand = Plus / Plus
Query: 296 ccaaaccactgtccactcccatggtgaagcctacatctactacagcttctgacaacagcc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ccaaaccactgtccactcccatggtgaagcctacatctactacagcttctgacaacagcc 496
Query: 356 cttatcaagacattactagttatagaagactagttggacaattgctttatttaactacta 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cttatcaagacattactagttatagaagactagttggacaattgctttatttaactacta 556
Query: 416 ccaggccagaaatttcctatgctgtccaacaacttagtcaacatatggctgctcctacca 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ccaggccagaaatttcctatgctgtccaacaacttagtcaacatatggctgctcctacca 616
Query: 476 accaacactatcaagctgctatcagggtcctc 507
||||||||||||||||||||||||||||||||
Sbjct: 617 accaacactatcaagctgctatcagggtcctc 648
>gnl|LJGI|TC77787
Length = 747
Score = 398 bits (201), Expect = e-110
Identities = 220/225 (97%), Gaps = 1/225 (0%)
Strand = Plus / Plus
Query: 72 ggatacgatttcctccaagatgattggacaagctaaagtttctcagagtctctactttct 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ggatacgatttcctccaagatgattggacaagctaaagtttctcagagtctctactttct 456
Query: 132 tgaggaacctaaaagaatctgtgttgcggtcactgattggaatatccagaataag-tttg 190
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 457 tgaggaacctaaaagaatctgtgttgcggtcactgattggaatatcccaaataagctttg 516
Query: 191 ttaacattgctgaaacagttcctggtacaaatggtagtcacccacaatttgatatgtggc 250
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 517 ttaacattgctgaaacagttcctggtaaaaatggtagtcacccacaatttgatatgtggc 576
Query: 251 attttagactcggacacccctccagtaaggttttacaacacatta 295
||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 577 attttagactcggacacccctccagcaaggttttacaacacatta 621
>gnl|LJGI|TC75105
Length = 435
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 437 ctgtccaacaacttagtcaacatatggc 464
||||||||||||||||||||||||||||
Sbjct: 408 ctgtccaacaacttagtcaacatatggc 435