Miyakogusa Predicted Gene

Lj0g3v0035849.1
Show Alignment: 

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0035849.1 tr|I3S150|I3S150_LOTJA Proteasome subunit beta
type OS=Lotus japonicus PE=2
SV=1,98.77,2e-39,PROTEASOME_B_2,Proteasome B-type subunit; N-terminal
nucleophile aminohydrolases (Ntn hydrolases),NU,CUFF.1569.1
         (246 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC63776 homologue to UniRef100_Q9XI05-2 Cluster: Isofor...   488   e-138
gnl|LJGI|TC73448 homologue to UniRef100_Q9XI05-2 Cluster: Isofor...   281   1e-75
gnl|LJGI|TC63797 homologue to UniRef100_Q9XI05-2 Cluster: Isofor...   281   1e-75

>gnl|LJGI|TC63776 homologue to UniRef100_Q9XI05-2 Cluster: Isoform 2 of Q9XI05 ; n=1;
           Arabidopsis thaliana|Rep: Isoform 2 of Q9XI05  -
           Arabidopsis thaliana (Mouse-ear cress), complete
          Length = 834

 Score =  488 bits (246), Expect = e-138
 Identities = 246/246 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtcaatcttcgagtacaatggaagtgccatagtcgccatggttggcaagaactgcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  atgtcaatcttcgagtacaatggaagtgccatagtcgccatggttggcaagaactgcttc 122

                                                                       
Query: 61  gccattgccagtgatcgcagactcggcgttcagctccaaaccgtagccaccgatttccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gccattgccagtgatcgcagactcggcgttcagctccaaaccgtagccaccgatttccaa 182

                                                                       
Query: 121 aggatcttcaaagttcacgacaagctcttcatcgctctctctggtctcgccaccgatgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 aggatcttcaaagttcacgacaagctcttcatcgctctctctggtctcgccaccgatgct 242

                                                                       
Query: 181 cagacactgtaccagcgtctcgttttccgacacaagctttatcagcttcgtgaagagagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 cagacactgtaccagcgtctcgttttccgacacaagctttatcagcttcgtgaagagagg 302

                 
Query: 241 gatatg 246
           ||||||
Sbjct: 303 gatatg 308


>gnl|LJGI|TC73448 homologue to UniRef100_Q9XI05-2 Cluster: Isoform 2 of Q9XI05 ; n=1;
           Arabidopsis thaliana|Rep: Isoform 2 of Q9XI05  -
           Arabidopsis thaliana (Mouse-ear cress), complete
          Length = 679

 Score =  281 bits (142), Expect = 1e-75
 Identities = 220/246 (89%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtcaatcttcgagtacaatggaagtgccatagtcgccatggttggcaagaactgcttc 60
           ||||| |||||||||||||| ||||||||| |||| || ||||| |||||||||||||||
Sbjct: 30  atgtcgatcttcgagtacaacggaagtgccctagtggctatggtgggcaagaactgcttc 89

                                                                       
Query: 61  gccattgccagtgatcgcagactcggcgttcagctccaaaccgtagccaccgatttccaa 120
           ||||||||||| ||||| || ||||| || |||||||| ||| ||||||||||||| || 
Sbjct: 90  gccattgccagcgatcgaaggctcggtgtgcagctccagaccatagccaccgattttcag 149

                                                                       
Query: 121 aggatcttcaaagttcacgacaagctcttcatcgctctctctggtctcgccaccgatgct 180
           ||||| | |||  |||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 150 aggatttccaagattcacgacaaactcttcatcggtctctctggtctcgccaccgatgct 209

                                                                       
Query: 181 cagacactgtaccagcgtctcgttttccgacacaagctttatcagcttcgtgaagagagg 240
           ||||||||||| |||||||||||||| || ||||| || |||||||||||||||||||||
Sbjct: 210 cagacactgtatcagcgtctcgtttttcgccacaaactgtatcagcttcgtgaagagagg 269

                 
Query: 241 gatatg 246
           ||||||
Sbjct: 270 gatatg 275


>gnl|LJGI|TC63797 homologue to UniRef100_Q9XI05-2 Cluster: Isoform 2 of Q9XI05 ; n=1;
           Arabidopsis thaliana|Rep: Isoform 2 of Q9XI05  -
           Arabidopsis thaliana (Mouse-ear cress), complete
          Length = 965

 Score =  281 bits (142), Expect = 1e-75
 Identities = 220/246 (89%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtcaatcttcgagtacaatggaagtgccatagtcgccatggttggcaagaactgcttc 60
           ||||| |||||||||||||| ||||||||| |||| || ||||| |||||||||||||||
Sbjct: 130 atgtcgatcttcgagtacaacggaagtgccctagtggctatggtgggcaagaactgcttc 189

                                                                       
Query: 61  gccattgccagtgatcgcagactcggcgttcagctccaaaccgtagccaccgatttccaa 120
           ||||||||||| ||||| || ||||| || |||||||| ||| ||||||||||||| || 
Sbjct: 190 gccattgccagcgatcgaaggctcggtgtgcagctccagaccatagccaccgattttcag 249

                                                                       
Query: 121 aggatcttcaaagttcacgacaagctcttcatcgctctctctggtctcgccaccgatgct 180
           ||||| | |||  |||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 250 aggatttccaagattcacgacaaactcttcatcggtctctctggtctcgccaccgatgct 309

                                                                       
Query: 181 cagacactgtaccagcgtctcgttttccgacacaagctttatcagcttcgtgaagagagg 240
           ||||||||||| |||||||||||||| || ||||| || |||||||||||||||||||||
Sbjct: 310 cagacactgtatcagcgtctcgtttttcgccacaaactgtatcagcttcgtgaagagagg 369

                 
Query: 241 gatatg 246
           ||||||
Sbjct: 370 gatatg 375