Miyakogusa Predicted Gene
- Lj0g3v0020069.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0020069.1 Non Chatacterized Hit- tr|F6GUK3|F6GUK3_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,73.48,0,RNA-binding domain, RBD,NULL; RNA recognition motif,RNA
recognition motif domain; seg,NULL; no descr,CUFF.1192.1
(771 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC68993 homologue to UniRef100_A7P058 Cluster: Chromoso... 1528 0.0
gnl|LJGI|BP048709 similar to UniRef100_Q9SEU4 Cluster: Serine/ar... 613 e-175
gnl|LJGI|TC82775 similar to UniRef100_Q9FYA8 Cluster: SC35-like ... 504 e-142
gnl|LJGI|TC76785 similar to UniRef100_Q52B63 Cluster: Pre-mRNA-s... 404 e-112
gnl|LJGI|TC62957 similar to UniRef100_Q10KQ7 Cluster: RNA recogn... 98 1e-19
gnl|LJGI|TC61975 similar to UniRef100_A7P058 Cluster: Chromosome... 98 1e-19
>gnl|LJGI|TC68993 homologue to UniRef100_A7P058 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (55%)
Length = 1057
Score = 1528 bits (771), Expect = 0.0
Identities = 771/771 (100%)
Strand = Plus / Plus
Query: 1 atgagaggaaggagttacactccatctccgccaccaccaccgccacgcggttacggcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 atgagaggaaggagttacactccatctccgccaccaccaccgccacgcggttacggcaga 101
Query: 61 agaggcggcggtggcggagggagaagccccagccctagaggcggaggccgctatggcccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 agaggcggcggtggcggagggagaagccccagccctagaggcggaggccgctatggcccc 161
Query: 121 cgccctcgagatctccctaccagccttctcgttcgtaaccttcgccatgattgcaggcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgccctcgagatctccctaccagccttctcgttcgtaaccttcgccatgattgcaggcct 221
Query: 181 gaagatcttcgcagaccatttggtcaattcggtcctcttaaggacatttacctgcctaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 gaagatcttcgcagaccatttggtcaattcggtcctcttaaggacatttacctgcctaag 281
Query: 241 gattactacactggacaaccccgcggtttcggttttgtccagtttgtagatcctgctgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gattactacactggacaaccccgcggtttcggttttgtccagtttgtagatcctgctgat 341
Query: 301 gccgctgatgcaaagtatcatatggatggtcaaattcttctcggtcgtgagctgactgtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gccgctgatgcaaagtatcatatggatggtcaaattcttctcggtcgtgagctgactgtt 401
Query: 361 gtctttgctgaggaaaacagaaagaagccaactgagatgaggcatagagagagaagtcgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gtctttgctgaggaaaacagaaagaagccaactgagatgaggcatagagagagaagtcgg 461
Query: 421 ggtcggtcttatgatcgaagaagatctcctcctcgttattctcgttcaccccgctactcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggtcggtcttatgatcgaagaagatctcctcctcgttattctcgttcaccccgctactcc 521
Query: 481 cgatctccaccaccacgccacagatctcgctctcgcagtcgtgactattattcccctcct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 cgatctccaccaccacgccacagatctcgctctcgcagtcgtgactattattcccctcct 581
Query: 541 cctaaacgcagggattcaagatctgtgtcacctgaggagagaaggtacagtcgagaacga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 cctaaacgcagggattcaagatctgtgtcacctgaggagagaaggtacagtcgagaacga 641
Query: 601 tcgtacacaccacgtagcagggagaggtcatactcacgctctccaccctataatggaggc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tcgtacacaccacgtagcagggagaggtcatactcacgctctccaccctataatggaggc 701
Query: 661 tcaagaagccgcagtcgtagtccagctaaagtcgcagtccacagcagaagcccaagtccg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tcaagaagccgcagtcgtagtccagctaaagtcgcagtccacagcagaagcccaagtccg 761
Query: 721 atccacggtgatgttagggagtcagcccgcattaggtcccctagtcagtga 771
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 atccacggtgatgttagggagtcagcccgcattaggtcccctagtcagtga 812
>gnl|LJGI|BP048709 similar to UniRef100_Q9SEU4 Cluster: Serine/arginine-rich protein;
n=1; Arabidopsis thaliana|Rep: Serine/arginine-rich
protein - Arabidopsis thaliana (Mouse-ear cress),
partial (32%)
Length = 391
Score = 613 bits (309), Expect = e-175
Identities = 316/317 (99%), Gaps = 1/317 (0%)
Strand = Plus / Minus
Query: 259 ccccgcggtttcggttttgtccagtttgtagatcctgctgatgccgctgatgcaaagtat 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ccccgcggtttcggttttgtccagtttgtagatcctgctgatgccgctgatgcaaagtat 257
Query: 319 catatggatggtcaaattcttctcggtcgtgagctgactgttgtctttgctgaggaaaac 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 catatggatggtcaaattcttctcggtcgtgagctgactgttgtctttgctgaggaaaac 197
Query: 379 agaaagaagccaactgagatgaggcatagagagagaagtcggggtcggtcttatgatcga 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 agaaagaagccaactgagatgaggcatagagagagaagtcggggtcggtcttatgatcga 137
Query: 439 agaagatctcctcctcgttattctcgttcaccccgctactcccgatctccaccaccacgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 agaagatctcctcctcgttattctcgttcaccccgctactcccgatctccaccaccacgc 77
Query: 499 cacagatctcgctctcgcagtcgtgactattattcccctcctcctaaacgcagggattca 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 cacagatctcgctctcgcagtcgtgactattattcccctcctcctaaacgcagggattca 17
Query: 559 agatctgtgtcacctga 575
| |||||||||||||||
Sbjct: 16 a-atctgtgtcacctga 1
>gnl|LJGI|TC82775 similar to UniRef100_Q9FYA8 Cluster: SC35-like splicing factor
SCL30a, 30a kD; n=1; Arabidopsis thaliana|Rep: SC35-like
splicing factor SCL30a, 30a kD - Arabidopsis thaliana
(Mouse-ear cress), partial (28%)
Length = 531
Score = 504 bits (254), Expect = e-142
Identities = 254/254 (100%)
Strand = Plus / Plus
Query: 1 atgagaggaaggagttacactccatctccgccaccaccaccgccacgcggttacggcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 atgagaggaaggagttacactccatctccgccaccaccaccgccacgcggttacggcaga 70
Query: 61 agaggcggcggtggcggagggagaagccccagccctagaggcggaggccgctatggcccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 agaggcggcggtggcggagggagaagccccagccctagaggcggaggccgctatggcccc 130
Query: 121 cgccctcgagatctccctaccagccttctcgttcgtaaccttcgccatgattgcaggcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 cgccctcgagatctccctaccagccttctcgttcgtaaccttcgccatgattgcaggcct 190
Query: 181 gaagatcttcgcagaccatttggtcaattcggtcctcttaaggacatttacctgcctaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gaagatcttcgcagaccatttggtcaattcggtcctcttaaggacatttacctgcctaag 250
Query: 241 gattactacactgg 254
||||||||||||||
Sbjct: 251 gattactacactgg 264
>gnl|LJGI|TC76785 similar to UniRef100_Q52B63 Cluster: Pre-mRNA-splicing factor
CWC22; n=1; Magnaporthe grisea|Rep: Pre-mRNA-splicing
factor CWC22 - Magnaporthe grisea (Rice blast fungus)
(Pyricularia grisea), partial (4%)
Length = 477
Score = 404 bits (204), Expect = e-112
Identities = 204/204 (100%)
Strand = Plus / Plus
Query: 568 tcacctgaggagagaaggtacagtcgagaacgatcgtacacaccacgtagcagggagagg 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcacctgaggagagaaggtacagtcgagaacgatcgtacacaccacgtagcagggagagg 60
Query: 628 tcatactcacgctctccaccctataatggaggctcaagaagccgcagtcgtagtccagct 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcatactcacgctctccaccctataatggaggctcaagaagccgcagtcgtagtccagct 120
Query: 688 aaagtcgcagtccacagcagaagcccaagtccgatccacggtgatgttagggagtcagcc 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaagtcgcagtccacagcagaagcccaagtccgatccacggtgatgttagggagtcagcc 180
Query: 748 cgcattaggtcccctagtcagtga 771
||||||||||||||||||||||||
Sbjct: 181 cgcattaggtcccctagtcagtga 204
>gnl|LJGI|TC62957 similar to UniRef100_Q10KQ7 Cluster: RNA recognition motif family
protein, expressed; n=1; Oryza sativa Japonica
Group|Rep: RNA recognition motif family protein,
expressed - Oryza sativa subsp. japonica (Rice), partial
(66%)
Length = 1273
Score = 97.6 bits (49), Expect = 1e-19
Identities = 88/101 (87%)
Strand = Plus / Plus
Query: 289 gatcctgctgatgccgctgatgcaaagtatcatatggatggtcaaattcttctcggtcgt 348
||||| |||||||| || |||||||| ||||| ||||| |||||||||||||| ||||||
Sbjct: 537 gatcccgctgatgctgcagatgcaaaatatcacatggacggtcaaattcttcttggtcgt 596
Query: 349 gagctgactgttgtctttgctgaggaaaacagaaagaagcc 389
||| | ||||| || ||||| || |||||||||||||||||
Sbjct: 597 gagttaactgtggtgtttgccgaagaaaacagaaagaagcc 637
>gnl|LJGI|TC61975 similar to UniRef100_A7P058 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (53%)
Length = 1043
Score = 97.6 bits (49), Expect = 1e-19
Identities = 88/101 (87%)
Strand = Plus / Plus
Query: 289 gatcctgctgatgccgctgatgcaaagtatcatatggatggtcaaattcttctcggtcgt 348
||||| |||||||| || |||||||| ||||| ||||| |||||||||||||| ||||||
Sbjct: 427 gatccagctgatgctgcagatgcaaaatatcacatggacggtcaaattcttcttggtcgt 486
Query: 349 gagctgactgttgtctttgctgaggaaaacagaaagaagcc 389
||| | ||||| || ||||| || |||||||||||||||||
Sbjct: 487 gagttaactgtggtgtttgccgaagaaaacagaaagaagcc 527