Miyakogusa Predicted Gene

Lj0g3v0018339.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0018339.1 Non Chatacterized Hit- tr|J3LF66|J3LF66_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB02G3,34.62,0.000000000000007,seg,NULL; DUF1771,Domain of unknown
function DUF1771; Smr,Smr protein/MutS2 C-terminal; SMR,Smr
prot,CUFF.1060.1
         (498 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC60364 similar to UniRef100_A7NYF6 Cluster: Chromosome...   955   0.0  

>gnl|LJGI|TC60364 similar to UniRef100_A7NYF6 Cluster: Chromosome chr6 scaffold_3,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr6 scaffold_3, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (41%)
          Length = 1008

 Score =  955 bits (482), Expect = 0.0
 Identities = 495/498 (99%), Gaps = 1/498 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaattggagaaatgtagcaaagaagttgcagtctttgggacctgggtttgatgtttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 76  atgaattggagaaatgtagcaaagaagttgcagtctttgggacctgggtttgatgtt-gt 134

                                                                       
Query: 61  ccaaatgttgcagaatctcagaagcgtacttatccaaaaggagatgaatatctcgtgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ccaaatgttgcagaatctcagaagcgtacttatccaaaaggagatgaatatctcgtgtgt 194

                                                                       
Query: 121 agggaagatgcaaagcagcactggggttcaatgaaatcttattatcagaaagctgcaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 agggaagatgcaaagcagcactggggttcaatgaaatcttattatcagaaagctgcaaca 254

                                                                       
Query: 181 gcatttaccagaggtgatcgagcttatgctgcatatctttctgaccagggaaaagaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gcatttaccagaggtgatcgagcttatgctgcatatctttctgaccagggaaaagaacaa 314

                                                                       
Query: 241 actaaattagctcagaaagcagacactaaggcaagccatgacatatttgtagctagaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 actaaattagctcagaaagcagacactaaggcaagccatgacatatttgtagctagaaac 374

                                                                       
Query: 301 aaggatatagaaaatgtgataactattgatttgcatggtcagcatgtaaaaccagcaatg 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 375 aaggatatagaaaatgtgataactattgatttgcatggttagcatgtaaaaccagcaatg 434

                                                                       
Query: 361 agaatgctaaaacttcacctactgtttggctcatatgttccttctgtccagacactgagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 agaatgctaaaacttcacctactgtttggctcatatgttccttctgtccagacactgagg 494

                                                                       
Query: 421 gttatcacaggatgtggatcgcatggtgttggaaagtccaagctgaaacaatcaattata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gttatcacaggatgtggatcgcatggtgttggaaagtccaagctgaaacaatcaattata 554

                             
Query: 481 aagcttctagattaagag 498
           |||||||||||| |||||
Sbjct: 555 aagcttctagataaagag 572