Miyakogusa Predicted Gene

Lj0g3v0017049.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0017049.1 Non Chatacterized Hit- tr|K3YIP7|K3YIP7_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si014116,49.5,1e-16,seg,NULL; PREDICTED PROTEIN,NULL; MEMBRANE
ASSOCIATED RING
FINGER,NULL,NODE_67104_length_933_cov_108.628082.path1.1
         (348 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC75191 homologue to UniRef100_A7PL43 Cluster: Chromoso...   426   e-119

>gnl|LJGI|TC75191 homologue to UniRef100_A7PL43 Cluster: Chromosome chr7 scaffold_20,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr7 scaffold_20, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (22%)
          Length = 485

 Score =  426 bits (215), Expect = e-119
 Identities = 218/219 (99%)
 Strand = Plus / Plus

                                                                       
Query: 130 ctatttactgtaattgggatattttacagcgtattggtggctactatggttggtcaacgc 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ctatttactgtaattgggatattttacagcgtattggtggctactatggttggtcaacgc 60

                                                                       
Query: 190 atatggcaacgccactatcacatacttgcaaaacggatgttaaccaaggagtatgtggtt 249
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 61  atatggcaacgccactatcacatacttgccaaacggatgttaaccaaggagtatgtggtt 120

                                                                       
Query: 250 gaagatgttgatggagagatgacagactctgattggtctccccctgtccttccacctgag 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaagatgttgatggagagatgacagactctgattggtctccccctgtccttccacctgag 180

                                                  
Query: 310 catgttcagcaattgaaaacattgggtctactatgagat 348
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 181 catgttcagcaattgaaaacattgggtctactatgagat 219