Miyakogusa Predicted Gene
- Lj0g3v0012939.3
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0012939.3 tr|Q0JHE8|Q0JHE8_ORYSJ Os01g0867800 protein
OS=Oryza sativa subsp. japonica GN=Os01g0867800 PE=2
SV=,57.89,2e-18,RRM_5,NULL; seg,NULL; HETEROGENEOUS NUCLEAR
RIBONUCLEOPROTEIN,NULL; RRM,RNA recognition motif domain,CUFF.702.3
(414 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|GO021878 homologue to UniRef100_A7Q790 Cluster: Chromos... 402 e-112
gnl|LJGI|DC598110 homologue to UniRef100_A7Q790 Cluster: Chromos... 232 1e-60
gnl|LJGI|TC73473 homologue to UniRef100_A7Q790 Cluster: Chromoso... 230 5e-60
>gnl|LJGI|GO021878 homologue to UniRef100_A7Q790 Cluster: Chromosome chr18
scaffold_59, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr18 scaffold_59, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (39%)
Length = 554
Score = 402 bits (203), Expect = e-112
Identities = 323/363 (88%)
Strand = Plus / Plus
Query: 52 aatgatttgcttcagctatttcagccttttggagtcataacaaagcttgtaatgttgcgt 111
|||||||| |||||||||||||| ||||||||||| |||||||||||||| ||| |||||
Sbjct: 74 aatgatttacttcagctatttcaaccttttggagtaataacaaagcttgtgatgctgcgt 133
Query: 112 gccaaaaatcaggcacttctccaaatgcaagatgttccttccgcagttagtgctttacaa 171
|| ||||||||||| ||||| |||||| | ||||| |||| ||||||| |||| ||||
Sbjct: 134 gctaaaaatcaggctcttctacaaatggacgatgtatcttctgcagttactgctatacag 193
Query: 172 ttttatgcaaatgttcagccaagcataagggggagaaatgtttatgtccagttttcctca 231
|||||||||||| | |||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct: 194 ttttatgcaaatatgcagccaagcataagggggaggaatgtttatgttcagttctcctca 253
Query: 232 catcaagaactaactacaatggatcagactcaagcacgagaagatgaggctttcaggctc 291
|||||||||||||| ||| | ||||| | ||||| ||||| |||||||||||||||||||
Sbjct: 254 catcaagaactaacaacagtagatcaaagtcaaggacgaggagatgaggctttcaggctc 313
Query: 292 tcatccaatttcaatcctgtcaaagtgctattactgccagaagtacacttcagggacgca 351
| ||||| | |||||| |||| |||||| ||||||| |||||| |||||||||| ||||
Sbjct: 314 tgatccagtatcaatcacgtcagagtgctgttactgctagaagtgcacttcagggtcgca 373
Query: 352 atatttatgatggttgctgtcagctggacattcaattctcaaaccttgatgagttacaag 411
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 374 atatttatgacggttgctgtcagctggacattcaattctcaaaccttgatgaattacaag 433
Query: 412 tga 414
|||
Sbjct: 434 tga 436
>gnl|LJGI|DC598110 homologue to UniRef100_A7Q790 Cluster: Chromosome chr18
scaffold_59, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr18 scaffold_59, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (20%)
Length = 573
Score = 232 bits (117), Expect = 1e-60
Identities = 201/229 (87%)
Strand = Plus / Plus
Query: 52 aatgatttgcttcagctatttcagccttttggagtcataacaaagcttgtaatgttgcgt 111
|||||||| |||||||||||||| ||||||||||| |||||||||||||| ||| |||||
Sbjct: 143 aatgatttacttcagctatttcaaccttttggagtaataacaaagcttgtgatgctgcgt 202
Query: 112 gccaaaaatcaggcacttctccaaatgcaagatgttccttccgcagttagtgctttacaa 171
|| ||||||||||| ||||| |||||| | ||||| |||| ||||||| |||| ||||
Sbjct: 203 gctaaaaatcaggctcttctacaaatggacgatgtatcttctgcagttactgctatacag 262
Query: 172 ttttatgcaaatgttcagccaagcataagggggagaaatgtttatgtccagttttcctca 231
|||||||||||| | |||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct: 263 ttttatgcaaatatgcagccaagcataagggggaggaatgtttatgttcagttctcctca 322
Query: 232 catcaagaactaactacaatggatcagactcaagcacgagaagatgagg 280
|||||||||||||| ||| | ||||| | ||||| ||||| ||||||||
Sbjct: 323 catcaagaactaacaacagtagatcaaagtcaaggacgaggagatgagg 371
>gnl|LJGI|TC73473 homologue to UniRef100_A7Q790 Cluster: Chromosome chr18
scaffold_59, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr18 scaffold_59, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (27%)
Length = 483
Score = 230 bits (116), Expect = 5e-60
Identities = 200/228 (87%)
Strand = Plus / Plus
Query: 52 aatgatttgcttcagctatttcagccttttggagtcataacaaagcttgtaatgttgcgt 111
|||||||| |||||||||||||| ||||||||||| |||||||||||||| ||| |||||
Sbjct: 173 aatgatttacttcagctatttcaaccttttggagtaataacaaagcttgtgatgctgcgt 232
Query: 112 gccaaaaatcaggcacttctccaaatgcaagatgttccttccgcagttagtgctttacaa 171
|| ||||||||||| ||||| |||||| | ||||| |||| ||||||| |||| ||||
Sbjct: 233 gctaaaaatcaggctcttctacaaatggacgatgtatcttctgcagttactgctatacag 292
Query: 172 ttttatgcaaatgttcagccaagcataagggggagaaatgtttatgtccagttttcctca 231
|||||||||||| | |||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct: 293 ttttatgcaaatatgcagccaagcataagggggaggaatgtttatgttcagttctcctca 352
Query: 232 catcaagaactaactacaatggatcagactcaagcacgagaagatgag 279
|||||||||||||| ||| | ||||| | ||||| ||||| |||||||
Sbjct: 353 catcaagaactaacaacagtagatcaaagtcaaggacgaggagatgag 400