Miyakogusa Predicted Gene
- Lj0g3v0012939.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0012939.1 tr|D8L9M8|D8L9M8_WHEAT RNA recognition domain
containing protein,expressed OS=Triticum aestivum
GN=T,26.06,0.11,RRM_5,NULL; seg,NULL; HETEROGENEOUS NUCLEAR
RIBONUCLEOPROTEIN,NULL; RRM,RNA recognition motif domain,CUFF.702.1
(702 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC73473 homologue to UniRef100_A7Q790 Cluster: Chromoso... 311 3e-84
gnl|LJGI|GO021878 homologue to UniRef100_A7Q790 Cluster: Chromos... 276 2e-73
gnl|LJGI|DC598110 homologue to UniRef100_A7Q790 Cluster: Chromos... 230 9e-60
>gnl|LJGI|TC73473 homologue to UniRef100_A7Q790 Cluster: Chromosome chr18
scaffold_59, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr18 scaffold_59, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (27%)
Length = 483
Score = 311 bits (157), Expect = 3e-84
Identities = 271/309 (87%)
Strand = Plus / Plus
Query: 52 aatgatttgcttcagctatttcagccttttggagtcataacaaagcttgtaatgttgcgt 111
|||||||| |||||||||||||| ||||||||||| |||||||||||||| ||| |||||
Sbjct: 173 aatgatttacttcagctatttcaaccttttggagtaataacaaagcttgtgatgctgcgt 232
Query: 112 gccaaaaatcaggcacttctccaaatgcaagatgttccttccgcagttagtgctttacaa 171
|| ||||||||||| ||||| |||||| | ||||| |||| ||||||| |||| ||||
Sbjct: 233 gctaaaaatcaggctcttctacaaatggacgatgtatcttctgcagttactgctatacag 292
Query: 172 ttttatgcaaatgttcagccaagcataagggggagaaatgtttatgtccagttttcctca 231
|||||||||||| | |||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct: 293 ttttatgcaaatatgcagccaagcataagggggaggaatgtttatgttcagttctcctca 352
Query: 232 catcaagaactaactacaatggatcagactcaagcacgagaagatgagccaaatcgaatt 291
|||||||||||||| ||| | ||||| | ||||| ||||| |||||||||||| ||||||
Sbjct: 353 catcaagaactaacaacagtagatcaaagtcaaggacgaggagatgagccaaaccgaatt 412
Query: 292 ctcttggttacagttcatcacatgctgtatcctataacagtggatgtactacatcaagtg 351
||||| |||||| ||||||||||||| |||||||| || |||||||| || |||||||
Sbjct: 413 ctcttagttacaattcatcacatgctctatcctatgactgtggatgtgctctatcaagta 472
Query: 352 ttttctccc 360
|||||||||
Sbjct: 473 ttttctccc 481
>gnl|LJGI|GO021878 homologue to UniRef100_A7Q790 Cluster: Chromosome chr18
scaffold_59, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr18 scaffold_59, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (39%)
Length = 554
Score = 276 bits (139), Expect = 2e-73
Identities = 208/231 (90%)
Strand = Plus / Plus
Query: 403 ggctttcaggctctcatccaatttcaatcctgtcaaagtgctattactgccagaagtaca 462
|||||||||||||| ||||| | |||||| |||| |||||| ||||||| |||||| ||
Sbjct: 301 ggctttcaggctctgatccagtatcaatcacgtcagagtgctgttactgctagaagtgca 360
Query: 463 cttcagggacgcaatatttatgatggttgctgtcagctggacattcaattctcaaacctt 522
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 361 cttcagggtcgcaatatttatgacggttgctgtcagctggacattcaattctcaaacctt 420
Query: 523 gatgagttacaagtgaacttcaataatgatcggccaagggacttcacaaacccaaatctg 582
||||| ||||||||||||| ||||||||| || ||||||||||||| |||||||||||
Sbjct: 421 gatgaattacaagtgaactacaataatgaccgttcaagggacttcactaacccaaatctc 480
Query: 583 cctacagagcagaaaggccgatcttcacaacctggatatggtgatgcagga 633
|||||||||||||||||| | |||| ||||||||||||||||||| ||||
Sbjct: 481 cctacagagcagaaaggcaggccttcccaacctggatatggtgatggagga 531
Score = 230 bits (116), Expect = 9e-60
Identities = 200/228 (87%)
Strand = Plus / Plus
Query: 52 aatgatttgcttcagctatttcagccttttggagtcataacaaagcttgtaatgttgcgt 111
|||||||| |||||||||||||| ||||||||||| |||||||||||||| ||| |||||
Sbjct: 74 aatgatttacttcagctatttcaaccttttggagtaataacaaagcttgtgatgctgcgt 133
Query: 112 gccaaaaatcaggcacttctccaaatgcaagatgttccttccgcagttagtgctttacaa 171
|| ||||||||||| ||||| |||||| | ||||| |||| ||||||| |||| ||||
Sbjct: 134 gctaaaaatcaggctcttctacaaatggacgatgtatcttctgcagttactgctatacag 193
Query: 172 ttttatgcaaatgttcagccaagcataagggggagaaatgtttatgtccagttttcctca 231
|||||||||||| | |||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct: 194 ttttatgcaaatatgcagccaagcataagggggaggaatgtttatgttcagttctcctca 253
Query: 232 catcaagaactaactacaatggatcagactcaagcacgagaagatgag 279
|||||||||||||| ||| | ||||| | ||||| ||||| |||||||
Sbjct: 254 catcaagaactaacaacagtagatcaaagtcaaggacgaggagatgag 301
>gnl|LJGI|DC598110 homologue to UniRef100_A7Q790 Cluster: Chromosome chr18
scaffold_59, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr18 scaffold_59, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (20%)
Length = 573
Score = 230 bits (116), Expect = 9e-60
Identities = 200/228 (87%)
Strand = Plus / Plus
Query: 52 aatgatttgcttcagctatttcagccttttggagtcataacaaagcttgtaatgttgcgt 111
|||||||| |||||||||||||| ||||||||||| |||||||||||||| ||| |||||
Sbjct: 143 aatgatttacttcagctatttcaaccttttggagtaataacaaagcttgtgatgctgcgt 202
Query: 112 gccaaaaatcaggcacttctccaaatgcaagatgttccttccgcagttagtgctttacaa 171
|| ||||||||||| ||||| |||||| | ||||| |||| ||||||| |||| ||||
Sbjct: 203 gctaaaaatcaggctcttctacaaatggacgatgtatcttctgcagttactgctatacag 262
Query: 172 ttttatgcaaatgttcagccaagcataagggggagaaatgtttatgtccagttttcctca 231
|||||||||||| | |||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct: 263 ttttatgcaaatatgcagccaagcataagggggaggaatgtttatgttcagttctcctca 322
Query: 232 catcaagaactaactacaatggatcagactcaagcacgagaagatgag 279
|||||||||||||| ||| | ||||| | ||||| ||||| |||||||
Sbjct: 323 catcaagaactaacaacagtagatcaaagtcaaggacgaggagatgag 370