Miyakogusa Predicted Gene

Lj0g3v0012369.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0012369.1 Non Chatacterized Hit- tr|F7ID12|F7ID12_CALJA
Uncharacterized protein OS=Callithrix jacchus
GN=CDKL5,34.57,1.5,seg,NULL,CUFF.626.1
         (351 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BW623433                                                     406   e-113
gnl|LJGI|TC77885                                                      250   5e-66

>gnl|LJGI|BW623433 
          Length = 473

 Score =  406 bits (205), Expect = e-113
 Identities = 223/229 (97%)
 Strand = Plus / Plus

                                                                       
Query: 123 ccttgcagcagccacacccatatattcttcctcatcaccaatactctttcttccttcatg 182
           ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 148 ccttgcagcagccacacccatttattcttcctcatcaccaatactctttctcccttcatg 207

                                                                       
Query: 183 tgacaataaccaccatgctgatttcttatcctcacattccagcacccaaaacgcacataa 242
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tgacaataaccaccatgctaatttcttatcctcacattccagcacccaaaacgcacataa 267

                                                                       
Query: 243 tggcccctctttctccttcacgcaacaacaccagctccttctccttagttcattttcttt 302
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 268 tggcccctctttctccttcacgcaacaacaccaactccttctccttagttcattttcttt 327

                                                            
Query: 303 gttgcagcacccacaccaccatggaaaaagaccagccacaccccctcca 351
           ||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 328 gttgcagcacccacaccaccatggacaaagaccagccacacccgctcca 376



 Score =  109 bits (55), Expect = 1e-23
 Identities = 55/55 (100%)
 Strand = Plus / Plus

                                                                  
Query: 26  cacacctttccattctctctacttcctccaacgtgagttacatcaccagaccatg 80
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51  cacacctttccattctctctacttcctccaacgtgagttacatcaccagaccatg 105


>gnl|LJGI|TC77885 
          Length = 974

 Score =  250 bits (126), Expect = 5e-66
 Identities = 132/134 (98%)
 Strand = Plus / Plus

                                                                       
Query: 180 atgtgacaataaccaccatgctgatttcttatcctcacattccagcacccaaaacgcaca 239
           |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 2   atgtgacaataaccaccatgctaatttcttctcctcacattccagcacccaaaacgcaca 61

                                                                       
Query: 240 taatggcccctctttctccttcacgcaacaacaccagctccttctccttagttcattttc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  taatggcccctctttctccttcacgcaacaacaccagctccttctccttagttcattttc 121

                         
Query: 300 tttgttgcagcacc 313
           ||||||||||||||
Sbjct: 122 tttgttgcagcacc 135