Miyakogusa Predicted Gene

Lj0g3v0008839.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0008839.1 Non Chatacterized Hit- tr|K4BTU3|K4BTU3_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,30.36,0.0000000000003,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; seg,NULL; Serine/Threonine protein kinases,
catalyt,CUFF.515.1
         (1929 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC80916 similar to UniRef100_A7NTC2 Cluster: Chromosome...    64   3e-09
gnl|LJGI|FS331431 weakly similar to UniRef100_A7NTC2 Cluster: Ch...    58   2e-07

>gnl|LJGI|TC80916 similar to UniRef100_A7NTC2 Cluster: Chromosome chr18 scaffold_1,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr18 scaffold_1, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (17%)
          Length = 1034

 Score = 63.9 bits (32), Expect = 3e-09
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                        
Query: 1747 gacccaactctgcgtgttgatgaggatctcttagaggaagtctgggctacagcccttgtg 1806
            |||||| |||||  ||||||||||||| ||||||||||||| ||||||| |||| |||| 
Sbjct: 82   gacccatctctgattgttgatgaggatttcttagaggaagtgtgggctatagccattgtt 141

                
Query: 1807 gcca 1810
            ||||
Sbjct: 142  gcca 145


>gnl|LJGI|FS331431 weakly similar to UniRef100_A7NTC2 Cluster: Chromosome chr18
           scaffold_1, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr18 scaffold_1, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (7%)
          Length = 714

 Score = 58.0 bits (29), Expect = 2e-07
 Identities = 59/69 (85%)
 Strand = Plus / Plus

                                                                       
Query: 107 ctactgagcaagaagcgcttctccaactgagtgattctctgggtttaaggagcaaagatt 166
           ||||||||| ||||||||||||  ||||||| | |||| |||| || |||||||| || |
Sbjct: 574 ctactgagcgagaagcgcttctggaactgaggggttctttggggttgaggagcaaggaat 633

                    
Query: 167 ggccaagaa 175
           |||||||||
Sbjct: 634 ggccaagaa 642