Miyakogusa Predicted Gene

Lj0g3v0008779.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0008779.1 tr|B9HHY4|B9HHY4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_564111 PE=4
SV=1,31.17,0.000000000002,DUF565,Uncharacterised protein family Ycf20;
seg,NULL,CUFF.511.1
         (549 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS329541 similar to UniRef100_A7PYD5 Cluster: Chromosom...   961   0.0  

>gnl|LJGI|FS329541 similar to UniRef100_A7PYD5 Cluster: Chromosome chr15 scaffold_37,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr15 scaffold_37, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (36%)
          Length = 789

 Score =  961 bits (485), Expect = 0.0
 Identities = 485/485 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgttgcttgtgactggagtaatgttatccaattatatgacatgtgccagagctatatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 atgttgcttgtgactggagtaatgttatccaattatatgacatgtgccagagctatatct 286

                                                                       
Query: 61  attgatcaaatcagttcaagagcttctaaagttggtctttctgcattcttttacaaaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 attgatcaaatcagttcaagagcttctaaagttggtctttctgcattcttttacaaaact 346

                                                                       
Query: 121 acatttggccagaagcaatgcgctccgtgcttctctgtcatttttgctcaaccttgttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 acatttggccagaagcaatgcgctccgtgcttctctgtcatttttgctcaaccttgttta 406

                                                                       
Query: 181 atgatcaatttgaggaagatgacttggtcagttagaagcagcataaatgacagcagtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 atgatcaatttgaggaagatgacttggtcagttagaagcagcataaatgacagcagtttt 466

                                                                       
Query: 241 agtccttccacttcaagtggcaccaatggaaggacccgcataatcaaagttattcaagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 agtccttccacttcaagtggcaccaatggaaggacccgcataatcaaagttattcaagag 526

                                                                       
Query: 301 tttcggaccaagttaggttctaaagttcaggaggtaaagaaaaatcttccgatgaagctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tttcggaccaagttaggttctaaagttcaggaggtaaagaaaaatcttccgatgaagctt 586

                                                                       
Query: 361 cttttcttcttggctggattttattgtgcaactgccttttccactgttattggacaaact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 cttttcttcttggctggattttattgtgcaactgccttttccactgttattggacaaact 646

                                                                       
Query: 421 ggtgattgggatattctatctgctgccttagctgtgtttgttgtggaaggcattggggct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ggtgattgggatattctatctgctgccttagctgtgtttgttgtggaaggcattggggct 706

                
Query: 481 ctcat 485
           |||||
Sbjct: 707 ctcat 711