Miyakogusa Predicted Gene
- Lj0g3v0004639.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0004639.1 Non Chatacterized Hit- tr|I1HGE5|I1HGE5_BRADI
Uncharacterized protein OS=Brachypodium distachyon GN=,75,0.012,no
description,Nucleotide-binding, alpha-beta plait; zf-CCCH,Zinc finger,
CCCH-type; RRM_5,NULL; zin,CUFF.294.1
(957 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC82561 similar to UniRef100_Q99L29 Cluster: cDNA seque... 1027 0.0
gnl|LJGI|TC73850 homologue to UniRef100_A7PPK3 Cluster: Chromoso... 856 0.0
gnl|LJGI|TC82268 homologue to UniRef100_A7PPK3 Cluster: Chromoso... 593 e-169
gnl|LJGI|TC71172 similar to UniRef100_Q99L29 Cluster: cDNA seque... 323 1e-87
gnl|LJGI|BW613015 similar to UniRef100_A7PPK3 Cluster: Chromosom... 180 1e-44
gnl|LJGI|TC61700 similar to UniRef100_A7PPK3 Cluster: Chromosome... 159 4e-38
gnl|LJGI|TC72712 similar to UniRef100_A7QPI3 Cluster: Chromosome... 143 2e-33
>gnl|LJGI|TC82561 similar to UniRef100_Q99L29 Cluster: cDNA sequence BC003883; n=1;
Mus musculus|Rep: cDNA sequence BC003883 - Mus musculus
(Mouse), partial (30%)
Length = 765
Score = 1027 bits (518), Expect = 0.0
Identities = 524/526 (99%)
Strand = Plus / Plus
Query: 432 tccggtgacggattttcgggaggctacttgcaggcagtatgaggagaatacttgcaaccg 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tccggtgacggattttcgggaggctacttgcaggcagtatgaggagaatacttgcaaccg 61
Query: 492 tggtggttattgcaacttcatgcacttgaaaagaattagcagggaattgaggcgccagtt 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tggtggttattgcaacttcatgcacttgaaaagaattagcagggaattgaggcgccagtt 121
Query: 552 gtttgggaagtctcatggaaggcacagcaggagccggagcaggagcccatacaggcatcg 611
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 122 gtttgggaagtctcatggaaggcacagcaggagccggagcaggagcccatacgggcatcg 181
Query: 612 gagccatgaggatcggtctcatcgcagtcatagcagtaagtatgatgacagagactatta 671
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gagccatgaggatcggtctcatcgcagtcatagcagtaagtatgatgacagagactattg 241
Query: 672 tcgtgagattcgtagcaggagacgcaagagcacaagtcctgagcgtaggaggggacggag 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tcgtgagattcgtagcaggagacgcaagagcacaagtcctgagcgtaggaggggacggag 301
Query: 732 tcgcagtcgggaaaggaggaatcgtactccagtcagggatcccagtgaggagagacgagc 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tcgcagtcgggaaaggaggaatcgtactccagtcagggatcccagtgaggagagacgagc 361
Query: 792 cagaattgagcagtggaacagggagagggaagagcaaggttctgcaagtaaggctaatac 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 cagaattgagcagtggaacagggagagggaagagcaaggttctgcaagtaaggctaatac 421
Query: 852 tgagcaaaccaacaatggtgacagtgggcacatgcagaattctagcacatatgatgggct 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tgagcaaaccaacaatggtgacagtgggcacatgcagaattctagcacatatgatgggct 481
Query: 912 tcagcaacaagagcagcaacagcaacctcctcaggagggatattga 957
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tcagcaacaagagcagcaacagcaacctcctcaggagggatattga 527
>gnl|LJGI|TC73850 homologue to UniRef100_A7PPK3 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (45%)
Length = 526
Score = 856 bits (432), Expect = 0.0
Identities = 432/432 (100%)
Strand = Plus / Plus
Query: 1 atggcggagcacttggcatcaatcttcggcacagagaaagacagagtgaattgcccattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 atggcggagcacttggcatcaatcttcggcacagagaaagacagagtgaattgcccattc 154
Query: 61 tacttcaagatcggagcatgcagacatggcgatcgctgctccaggctccacaccaaaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 tacttcaagatcggagcatgcagacatggcgatcgctgctccaggctccacaccaaaccc 214
Query: 121 agcatcagccccaccattctcctctccaacatgtaccaacgccctgacatgatcactccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 agcatcagccccaccattctcctctccaacatgtaccaacgccctgacatgatcactccc 274
Query: 181 ggcgtcgacgttcacggccaacccatcgaccctcgcaggatccaggaccactttgaagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggcgtcgacgttcacggccaacccatcgaccctcgcaggatccaggaccactttgaagaa 334
Query: 241 ttctatgaggatttgtttgaagagttgtctaagtatggtgatattgaaagcctcaatgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ttctatgaggatttgtttgaagagttgtctaagtatggtgatattgaaagcctcaatgtg 394
Query: 301 tgtgataacctcgctgatcacatggttggtaatgtgtacgttcagtttagagaggaagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tgtgataacctcgctgatcacatggttggtaatgtgtacgttcagtttagagaggaagaa 454
Query: 361 catgctggtaatgctgttaggaatctcactggaaggttttatgctggtcgtccaattatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 catgctggtaatgctgttaggaatctcactggaaggttttatgctggtcgtccaattatt 514
Query: 421 gttgacttctct 432
||||||||||||
Sbjct: 515 gttgacttctct 526
>gnl|LJGI|TC82268 homologue to UniRef100_A7PPK3 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (45%)
Length = 451
Score = 593 bits (299), Expect = e-169
Identities = 299/299 (100%)
Strand = Plus / Plus
Query: 1 atggcggagcacttggcatcaatcttcggcacagagaaagacagagtgaattgcccattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25 atggcggagcacttggcatcaatcttcggcacagagaaagacagagtgaattgcccattc 84
Query: 61 tacttcaagatcggagcatgcagacatggcgatcgctgctccaggctccacaccaaaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 tacttcaagatcggagcatgcagacatggcgatcgctgctccaggctccacaccaaaccc 144
Query: 121 agcatcagccccaccattctcctctccaacatgtaccaacgccctgacatgatcactccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 agcatcagccccaccattctcctctccaacatgtaccaacgccctgacatgatcactccc 204
Query: 181 ggcgtcgacgttcacggccaacccatcgaccctcgcaggatccaggaccactttgaagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggcgtcgacgttcacggccaacccatcgaccctcgcaggatccaggaccactttgaagaa 264
Query: 241 ttctatgaggatttgtttgaagagttgtctaagtatggtgatattgaaagcctcaatgt 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttctatgaggatttgtttgaagagttgtctaagtatggtgatattgaaagcctcaatgt 323
Score = 258 bits (130), Expect = 6e-68
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 325 gttggtaatgtgtacgttcagtttagagaggaagaacatgctggtaatgctgttaggaat 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gttggtaatgtgtacgttcagtttagagaggaagaacatgctggtaatgctgttaggaat 381
Query: 385 ctcactggaaggttttatgctggtcgtccaattattgttgacttctctccggtgacggat 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctcactggaaggttttatgctggtcgtccaattattgttgacttctctccggtgacggat 441
Query: 445 tttcgggagg 454
||||||||||
Sbjct: 442 tttcgggagg 451
>gnl|LJGI|TC71172 similar to UniRef100_Q99L29 Cluster: cDNA sequence BC003883; n=1;
Mus musculus|Rep: cDNA sequence BC003883 - Mus musculus
(Mouse), partial (60%)
Length = 661
Score = 323 bits (163), Expect = 1e-87
Identities = 460/559 (82%)
Strand = Plus / Plus
Query: 1 atggcggagcacttggcatcaatcttcggcacagagaaagacagagtgaattgcccattc 60
|||||||||||||||||||| ||||||||||| |||||||||||||| || ||||| |||
Sbjct: 71 atggcggagcacttggcatcgatcttcggcaccgagaaagacagagtcaactgccctttc 130
Query: 61 tacttcaagatcggagcatgcagacatggcgatcgctgctccaggctccacaccaaaccc 120
|||||||||||||| || ||| | || ||||| |||||||| | |||||||| |||||
Sbjct: 131 tacttcaagatcggcgcctgccgccacggcgaccgctgctcgcgcctccacacaaaacca 190
Query: 121 agcatcagccccaccattctcctctccaacatgtaccaacgccctgacatgatcactccc 180
||||||||||| || | || ||||||||||||||||| || || ||||| |||| |||
Sbjct: 191 agcatcagcccaacgctgctactctccaacatgtaccagcgtccggacatcgtcaccccc 250
Query: 181 ggcgtcgacgttcacggccaacccatcgaccctcgcaggatccaggaccactttgaagaa 240
|||||||||| || || || ||||||||||| |||| |||||| |||||| || ||
Sbjct: 251 ggcgtcgacgcccagggtcagcccatcgacccccgcaagatccaaacccacttcgatgac 310
Query: 241 ttctatgaggatttgtttgaagagttgtctaagtatggtgatattgaaagcctcaatgtg 300
||||| | || | || || || | || ||||| ||| || ||| ||||| ||
Sbjct: 311 ttctaccaagacctcttcgatgaactctccaagtacggtcgacttcaaacgctcaacgtt 370
Query: 301 tgtgataacctcgctgatcacatggttggtaatgtgtacgttcagtttagagaggaagaa 360
|||||||| |||||||||||||||||||||||||| || | |||||| || |||||||||
Sbjct: 371 tgtgataatctcgctgatcacatggttggtaatgtttatgctcagttcagggaggaagaa 430
Query: 361 catgctggtaatgctgttaggaatctcactggaaggttttatgctggtcgtccaattatt 420
|| |||| | | || ||| ||||||||||||||| ||||||||||| || ||||||
Sbjct: 431 cacgctgctgaggcgcttaagaatctcactggaagattttatgctggaaacccgattatt 490
Query: 421 gttgacttctctccggtgacggattttcgggaggctacttgcaggcagtatgaggagaat 480
|| ||||| ||||| || || || || || ||||||||||||||||||||||||||| ||
Sbjct: 491 gtggacttttctcctgtaacagacttccgtgaggctacttgcaggcagtatgaggaggat 550
Query: 481 acttgcaaccgtggtggttattgcaacttcatgcacttgaaaagaattagcagggaattg 540
|||| ||||| || || ||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 551 tcttgtaaccggggaggctattgcaactttatgcacttgaaaaaaattagcagggaattg 610
Query: 541 aggcgccagttgtttggga 559
||||| ||||||||||||
Sbjct: 611 aggcgtgagttgtttggga 629
>gnl|LJGI|BW613015 similar to UniRef100_A7PPK3 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (41%)
Length = 487
Score = 180 bits (91), Expect = 1e-44
Identities = 298/367 (81%)
Strand = Plus / Plus
Query: 1 atggcggagcacttggcatcaatcttcggcacagagaaagacagagtgaattgcccattc 60
|||||||||||||||||||| ||||||||||| |||||||||||||| || ||||| |||
Sbjct: 98 atggcggagcacttggcatcgatcttcggcaccgagaaagacagagtcaactgccctttc 157
Query: 61 tacttcaagatcggagcatgcagacatggcgatcgctgctccaggctccacaccaaaccc 120
|||||||||||||| || ||| | || ||||| |||||||| | |||||||| |||||
Sbjct: 158 tacttcaagatcggcgcctgccgccacggcgaccgctgctcgcgcctccacacaaaacca 217
Query: 121 agcatcagccccaccattctcctctccaacatgtaccaacgccctgacatgatcactccc 180
||||||||||| || | || ||||||||||||||||| || || ||||| |||| |||
Sbjct: 218 agcatcagcccaacgctgctactctccaacatgtaccagcgtccggacatcgtcaccccc 277
Query: 181 ggcgtcgacgttcacggccaacccatcgaccctcgcaggatccaggaccactttgaagaa 240
|||||||||| || || || ||||||||||| |||| |||||| |||||| || ||
Sbjct: 278 ggcgtcgacgcccagggtcagcccatcgacccccgcaagatccaaacccacttcgatgac 337
Query: 241 ttctatgaggatttgtttgaagagttgtctaagtatggtgatattgaaagcctcaatgtg 300
||||| | || | || || || | || ||||| ||| || ||| ||||| ||
Sbjct: 338 ttctaccaagacctcttcgatgaactctccaagtacggtcgacttcaaacgctcaacgtt 397
Query: 301 tgtgataacctcgctgatcacatggttggtaatgtgtacgttcagtttagagaggaagaa 360
|||||||| |||||||||||||||||||||||||| || | |||||| || |||||||||
Sbjct: 398 tgtgataatctcgctgatcacatggttggtaatgtttatgctcagttcagggaggaagaa 457
Query: 361 catgctg 367
|| ||||
Sbjct: 458 cacgctg 464
>gnl|LJGI|TC61700 similar to UniRef100_A7PPK3 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (74%)
Length = 1346
Score = 159 bits (80), Expect = 4e-38
Identities = 149/172 (86%)
Strand = Plus / Plus
Query: 1 atggcggagcacttggcatcaatcttcggcacagagaaagacagagtgaattgcccattc 60
|||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct: 146 atggcggagcacttggcatcgatcttcggaacagagaaagacagagtgaactgcccattc 205
Query: 61 tacttcaagatcggagcatgcagacatggcgatcgctgctccaggctccacaccaaaccc 120
||||||||||||||||| |||||||| ||||| || || || | || |||||||| ||
Sbjct: 206 tacttcaagatcggagcctgcagacacggcgaccgttgttctcgccttcacaccaagcct 265
Query: 121 agcatcagccccaccattctcctctccaacatgtaccaacgccctgacatga 172
| |||| ||||||| | ||||||||||||||||||| | ||||||||||
Sbjct: 266 accatctcccccaccctcgtcctctccaacatgtaccagaggcctgacatga 317
Score = 159 bits (80), Expect = 4e-38
Identities = 188/224 (83%)
Strand = Plus / Plus
Query: 313 gctgatcacatggttggtaatgtgtacgttcagtttagagaggaagaacatgctggtaat 372
||||||||||||||||| ||||| || ||||||| || ||||||||| ||||||| ||||
Sbjct: 476 gctgatcacatggttggcaatgtatatgttcagtataaagaggaagatcatgctgctaat 535
Query: 373 gctgttaggaatctcactggaaggttttatgctggtcgtccaattattgttgacttctct 432
||| | | |||||| |||||||| |||||| | ||||| || || |||| ||||| |||
Sbjct: 536 gctctgatgaatcttactggaagattttattcaggtcgacccatcattgccgacttttct 595
Query: 433 ccggtgacggattttcgggaggctacttgcaggcagtatgaggagaatacttgcaaccgt 492
|| || ||||||||||| || |||||||| |||||||||||||| ||| ||||| ||
Sbjct: 596 cctgttacggattttcgagaagctacttgtaggcagtatgaggaaaatgtatgcaatcga 655
Query: 493 ggtggttattgcaacttcatgcacttgaaaagaattagcaggga 536
||||| || ||||||||||||||||| || | ||||||||||||
Sbjct: 656 ggtggctactgcaacttcatgcacttaaagaaaattagcaggga 699
>gnl|LJGI|TC72712 similar to UniRef100_A7QPI3 Cluster: Chromosome chr18 scaffold_137,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_137, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (83%)
Length = 1286
Score = 143 bits (72), Expect = 2e-33
Identities = 207/252 (82%)
Strand = Plus / Plus
Query: 1 atggcggagcacttggcatcaatcttcggcacagagaaagacagagtgaattgcccattc 60
|||||||||||| |||||||||| |||||||| ||||| ||| | || || ||||| |||
Sbjct: 131 atggcggagcacctggcatcaatattcggcaccgagaaggaccgcgttaactgccccttc 190
Query: 61 tacttcaagatcggagcatgcagacatggcgatcgctgctccaggctccacaccaaaccc 120
|||||||||||||| || |||||||| ||||| |||||||| | ||||||| | |||
Sbjct: 191 tacttcaagatcggcgcctgcagacacggcgaccgctgctctcgcctccacaaccgcccc 250
Query: 121 agcatcagccccaccattctcctctccaacatgtaccaacgccctgacatgatcactccc 180
|||||| ||||||| | |||||| ||||||||||||| | || ||||||||||| |||
Sbjct: 251 agcatctcccccaccctcctcctcgccaacatgtaccagagacccgacatgatcaccccc 310
Query: 181 ggcgtcgacgttcacggccaacccatcgaccctcgcaggatccaggaccactttgaagaa 240
||||||||| || ||||| || ||||| || ||| ||| ||| | |||||||| ||
Sbjct: 311 ggcgtcgacccacagggccagcctatcgatccgcgcgagattcagcagcactttgaggat 370
Query: 241 ttctatgaggat 252
||||||||||||
Sbjct: 371 ttctatgaggat 382
Score = 75.8 bits (38), Expect = 4e-13
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 442 gattttcgggaggctacttgcaggcagtatgaggagaatacttgcaaccgtggtggttat 501
||||| || ||||| ||||| ||||||||||||||||||| || ||||| ||||||||
Sbjct: 572 gatttccgtgaggcgacttgtaggcagtatgaggagaatagctgtaaccgcggtggttac 631
Query: 502 tgcaacttcatgca 515
||||||||||||||
Sbjct: 632 tgcaacttcatgca 645