Miyakogusa Predicted Gene
- Lj0g3v0001829.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0001829.1 tr|G7LCE0|G7LCE0_MEDTR Heterogeneous nuclear
ribonucleoprotein A1 OS=Medicago truncatula
GN=MTR_8g10,43.68,0.00000000000002,RNA-binding domain, RBD,NULL;
RRM_1,RNA recognition motif domain; no
description,Nucleotide-binding,,CUFF.99.1
(1362 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS353484 weakly similar to UniRef100_A7Q348 Cluster: Ch... 254 1e-66
gnl|LJGI|TC58641 similar to UniRef100_A7R1X0 Cluster: Chromosome... 98 2e-19
gnl|LJGI|FS339207 similar to UniRef100_A7R1X0 Cluster: Chromosom... 80 4e-14
>gnl|LJGI|FS353484 weakly similar to UniRef100_A7Q348 Cluster: Chromosome chr12
scaffold_47, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr12 scaffold_47, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (10%)
Length = 649
Score = 254 bits (128), Expect = 1e-66
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 1221 gaattttgagccagatggatttgatccctttggttatggacttggcgtcgtagcttcaga 1280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gaattttgagccagatggatttgatccctttggttatggacttggcgtcgtagcttcaga 590
Query: 1281 tgtttctgccaaatgttctccaggttatgttggaagttatacagtcaacaagaggcagcc 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tgtttctgccaaatgttctccaggttatgttggaagttatacagtcaacaagaggcagcc 530
Query: 1341 aaataagg 1348
||||||||
Sbjct: 529 aaataagg 522
>gnl|LJGI|TC58641 similar to UniRef100_A7R1X0 Cluster: Chromosome undetermined
scaffold_383, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_383,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (58%)
Length = 2146
Score = 97.6 bits (49), Expect = 2e-19
Identities = 130/157 (82%)
Strand = Plus / Plus
Query: 280 aagatatttgttggaggtttagcatcaacagttacagagagtgatttcaaaaagtacttt 339
|||||||||||||||||| || |||| ||| |||| ||||||||||| || || ||||||
Sbjct: 451 aagatatttgttggaggtctaccatccacaattactgagagtgattttaagaactacttt 510
Query: 340 gatcaatttgggacgataaaagatctggttgtgatgtgtgaccccaacactcagaggcca 399
||||| ||||| || || | |||| | || ||||||| ||||| ||||| || |||||
Sbjct: 511 gatcagtttggaacaattacagatgttgtcgtgatgtatgaccataacacacaaaggcct 570
Query: 400 agagggtttggatttatcacttatgattctgaggaag 436
||||| |||||||| || || | ||||||||||||||
Sbjct: 571 agaggttttggattcataacctttgattctgaggaag 607
>gnl|LJGI|FS339207 similar to UniRef100_A7R1X0 Cluster: Chromosome undetermined
scaffold_383, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_383,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (33%)
Length = 622
Score = 79.8 bits (40), Expect = 4e-14
Identities = 109/132 (82%)
Strand = Plus / Plus
Query: 280 aagatatttgttggaggtttagcatcaacagttacagagagtgatttcaaaaagtacttt 339
|||||||||||||||||| || |||| ||| |||| ||||||||||| || || ||||||
Sbjct: 491 aagatatttgttggaggtctaccatccacaattactgagagtgattttaagaactacttt 550
Query: 340 gatcaatttgggacgataaaagatctggttgtgatgtgtgaccccaacactcagaggcca 399
||||| ||||| || || | |||| | || ||||||| ||||| ||||| || |||||
Sbjct: 551 gatcagtttggaacaattacagatgttgtcgtgatgtatgaccataacacacaaaggcct 610
Query: 400 agagggtttgga 411
||||| ||||||
Sbjct: 611 agaggttttgga 622