Result of FASTA (omim) for pF1KE2657
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2657, 197 aa
  1>>>pF1KE2657     197 - 197 aa - 197 aa
Library: /omim/omim.rfq.tfa
  60892289 residues in 85410 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7688+/-0.000286; mu= 16.5449+/- 0.018
 mean_var=62.1549+/-12.607, 0's: 0 Z-trim(118.0): 11  B-trim: 0 in 0/53
 Lambda= 0.162681
 statistics sampled from 30508 (30519) to 30508 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.357), width:  16
 Scan time:  6.320

The best scores are:                                      opt bits E(85410)
NP_003009 (OMIM: 178500,178620,610913) pulmonary s ( 197) 1287 309.8 1.8e-84
NP_001165881 (OMIM: 178500,178620,610913) pulmonar ( 197) 1287 309.8 1.8e-84
NP_001165828 (OMIM: 178500,178620,610913) pulmonar ( 191) 1222 294.6 6.9e-80
NP_001304709 (OMIM: 178500,178620,610913) pulmonar ( 191) 1222 294.6 6.9e-80
NP_001304707 (OMIM: 178500,178620,610913) pulmonar ( 191) 1222 294.6 6.9e-80
NP_001304708 (OMIM: 178500,178620,610913) pulmonar ( 144)  845 206.0 2.4e-53
XP_011542915 (OMIM: 178500,178620,610913) PREDICTE ( 144)  845 206.0 2.4e-53
NP_001011705 (OMIM: 605147) leukocyte cell-derived ( 333)  148 42.7  0.0008
NP_008946 (OMIM: 605147) leukocyte cell-derived ch ( 334)  148 42.7  0.0008
XP_011533200 (OMIM: 605147) PREDICTED: leukocyte c ( 364)  148 42.7 0.00086
XP_011533199 (OMIM: 605147) PREDICTED: leukocyte c ( 365)  148 42.7 0.00086


>>NP_003009 (OMIM: 178500,178620,610913) pulmonary surfa  (197 aa)
 initn: 1287 init1: 1287 opt: 1287  Z-score: 1637.5  bits: 309.8 E(85410): 1.8e-84
Smith-Waterman score: 1287; 99.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197)

               10        20        30        40        50        60
pF1KE2 MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVVVVLIVVVIVGALLMGLHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVVVVLIVVVIVGALLMGLHM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 SQKHTEMVLEMSIGAPEAQQRLALSEHLVTTATFSIGSTGLVVYDYQQLLIAYKPAPGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SQKHTEMVLEMSIGAPEAQQRLALSEHLVTTATFSIGSTGLVVYDYQQLLIAYKPAPGTC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 CYIMKIAPESIPSLEALNRKVHNFQMECSLQAKPAVPTSKLGQAEGRDAGSAPSGGDPAF
       :::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
NP_003 CYIMKIAPESIPSLEALTRKVHNFQMECSLQAKPAVPTSKLGQAEGRDAGSAPSGGDPAF
              130       140       150       160       170       180

              190       
pF1KE2 LGMAVNTLCGEVPLYYI
       :::::.:::::::::::
NP_003 LGMAVSTLCGEVPLYYI
              190       

>>NP_001165881 (OMIM: 178500,178620,610913) pulmonary su  (197 aa)
 initn: 1287 init1: 1287 opt: 1287  Z-score: 1637.5  bits: 309.8 E(85410): 1.8e-84
Smith-Waterman score: 1287; 99.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197)

               10        20        30        40        50        60
pF1KE2 MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVVVVLIVVVIVGALLMGLHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVVVVLIVVVIVGALLMGLHM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 SQKHTEMVLEMSIGAPEAQQRLALSEHLVTTATFSIGSTGLVVYDYQQLLIAYKPAPGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQKHTEMVLEMSIGAPEAQQRLALSEHLVTTATFSIGSTGLVVYDYQQLLIAYKPAPGTC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 CYIMKIAPESIPSLEALNRKVHNFQMECSLQAKPAVPTSKLGQAEGRDAGSAPSGGDPAF
       :::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
NP_001 CYIMKIAPESIPSLEALTRKVHNFQMECSLQAKPAVPTSKLGQAEGRDAGSAPSGGDPAF
              130       140       150       160       170       180

              190       
pF1KE2 LGMAVNTLCGEVPLYYI
       :::::.:::::::::::
NP_001 LGMAVSTLCGEVPLYYI
              190       

>>NP_001165828 (OMIM: 178500,178620,610913) pulmonary su  (191 aa)
 initn: 939 init1: 939 opt: 1222  Z-score: 1555.3  bits: 294.6 E(85410): 6.9e-80
Smith-Waterman score: 1222; 95.9% identity (97.0% similar) in 197 aa overlap (1-197:1-191)

               10        20        30        40        50        60
pF1KE2 MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVVVVLIVVVIVGALLMGLHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVVVVLIVVVIVGALLMGLHM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 SQKHTEMVLEMSIGAPEAQQRLALSEHLVTTATFSIGSTGLVVYDYQQLLIAYKPAPGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQKHTEMVLEMSIGAPEAQQRLALSEHLVTTATFSIGSTGLVVYDYQQLLIAYKPAPGTC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 CYIMKIAPESIPSLEALNRKVHNFQMECSLQAKPAVPTSKLGQAEGRDAGSAPSGGDPAF
       :::::::::::::::::.:::::::      :::::::::::::::::::::::::::::
NP_001 CYIMKIAPESIPSLEALTRKVHNFQ------AKPAVPTSKLGQAEGRDAGSAPSGGDPAF
              130       140             150       160       170    

              190       
pF1KE2 LGMAVNTLCGEVPLYYI
       :::::.:::::::::::
NP_001 LGMAVSTLCGEVPLYYI
          180       190 

>>NP_001304709 (OMIM: 178500,178620,610913) pulmonary su  (191 aa)
 initn: 939 init1: 939 opt: 1222  Z-score: 1555.3  bits: 294.6 E(85410): 6.9e-80
Smith-Waterman score: 1222; 95.9% identity (97.0% similar) in 197 aa overlap (1-197:1-191)

               10        20        30        40        50        60
pF1KE2 MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVVVVLIVVVIVGALLMGLHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVVVVLIVVVIVGALLMGLHM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 SQKHTEMVLEMSIGAPEAQQRLALSEHLVTTATFSIGSTGLVVYDYQQLLIAYKPAPGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQKHTEMVLEMSIGAPEAQQRLALSEHLVTTATFSIGSTGLVVYDYQQLLIAYKPAPGTC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 CYIMKIAPESIPSLEALNRKVHNFQMECSLQAKPAVPTSKLGQAEGRDAGSAPSGGDPAF
       :::::::::::::::::.:::::::      :::::::::::::::::::::::::::::
NP_001 CYIMKIAPESIPSLEALTRKVHNFQ------AKPAVPTSKLGQAEGRDAGSAPSGGDPAF
              130       140             150       160       170    

              190       
pF1KE2 LGMAVNTLCGEVPLYYI
       :::::.:::::::::::
NP_001 LGMAVSTLCGEVPLYYI
          180       190 

>>NP_001304707 (OMIM: 178500,178620,610913) pulmonary su  (191 aa)
 initn: 939 init1: 939 opt: 1222  Z-score: 1555.3  bits: 294.6 E(85410): 6.9e-80
Smith-Waterman score: 1222; 95.9% identity (97.0% similar) in 197 aa overlap (1-197:1-191)

               10        20        30        40        50        60
pF1KE2 MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVVVVLIVVVIVGALLMGLHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVVVVLIVVVIVGALLMGLHM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 SQKHTEMVLEMSIGAPEAQQRLALSEHLVTTATFSIGSTGLVVYDYQQLLIAYKPAPGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQKHTEMVLEMSIGAPEAQQRLALSEHLVTTATFSIGSTGLVVYDYQQLLIAYKPAPGTC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 CYIMKIAPESIPSLEALNRKVHNFQMECSLQAKPAVPTSKLGQAEGRDAGSAPSGGDPAF
       :::::::::::::::::.:::::::      :::::::::::::::::::::::::::::
NP_001 CYIMKIAPESIPSLEALTRKVHNFQ------AKPAVPTSKLGQAEGRDAGSAPSGGDPAF
              130       140             150       160       170    

              190       
pF1KE2 LGMAVNTLCGEVPLYYI
       :::::.:::::::::::
NP_001 LGMAVSTLCGEVPLYYI
          180       190 

>>NP_001304708 (OMIM: 178500,178620,610913) pulmonary su  (144 aa)
 initn: 924 init1: 845 opt: 845  Z-score: 1078.8  bits: 206.0 E(85410): 2.4e-53
Smith-Waterman score: 845; 98.5% identity (100.0% similar) in 130 aa overlap (68-197:15-144)

        40        50        60        70        80        90       
pF1KE2 IVVVVVVLIVVVIVGALLMGLHMSQKHTEMVLEMSIGAPEAQQRLALSEHLVTTATFSIG
                                     ::::::::::::::::::::::::::::::
NP_001                 MDVGSKEVLMESPPVLEMSIGAPEAQQRLALSEHLVTTATFSIG
                               10        20        30        40    

       100       110       120       130       140       150       
pF1KE2 STGLVVYDYQQLLIAYKPAPGTCCYIMKIAPESIPSLEALNRKVHNFQMECSLQAKPAVP
       ::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
NP_001 STGLVVYDYQQLLIAYKPAPGTCCYIMKIAPESIPSLEALTRKVHNFQMECSLQAKPAVP
           50        60        70        80        90       100    

       160       170       180       190       
pF1KE2 TSKLGQAEGRDAGSAPSGGDPAFLGMAVNTLCGEVPLYYI
       ::::::::::::::::::::::::::::.:::::::::::
NP_001 TSKLGQAEGRDAGSAPSGGDPAFLGMAVSTLCGEVPLYYI
          110       120       130       140    

>>XP_011542915 (OMIM: 178500,178620,610913) PREDICTED: p  (144 aa)
 initn: 924 init1: 845 opt: 845  Z-score: 1078.8  bits: 206.0 E(85410): 2.4e-53
Smith-Waterman score: 845; 98.5% identity (100.0% similar) in 130 aa overlap (68-197:15-144)

        40        50        60        70        80        90       
pF1KE2 IVVVVVVLIVVVIVGALLMGLHMSQKHTEMVLEMSIGAPEAQQRLALSEHLVTTATFSIG
                                     ::::::::::::::::::::::::::::::
XP_011                 MDVGSKEVLMESPPVLEMSIGAPEAQQRLALSEHLVTTATFSIG
                               10        20        30        40    

       100       110       120       130       140       150       
pF1KE2 STGLVVYDYQQLLIAYKPAPGTCCYIMKIAPESIPSLEALNRKVHNFQMECSLQAKPAVP
       ::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
XP_011 STGLVVYDYQQLLIAYKPAPGTCCYIMKIAPESIPSLEALTRKVHNFQMECSLQAKPAVP
           50        60        70        80        90       100    

       160       170       180       190       
pF1KE2 TSKLGQAEGRDAGSAPSGGDPAFLGMAVNTLCGEVPLYYI
       ::::::::::::::::::::::::::::.:::::::::::
XP_011 TSKLGQAEGRDAGSAPSGGDPAFLGMAVSTLCGEVPLYYI
          110       120       130       140    

>>NP_001011705 (OMIM: 605147) leukocyte cell-derived che  (333 aa)
 initn: 115 init1:  59 opt: 148  Z-score: 189.6  bits: 42.7 E(85410): 0.0008
Smith-Waterman score: 148; 24.9% identity (55.2% similar) in 201 aa overlap (3-197:13-201)

                         10        20        30        40          
pF1KE2           MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVV--VVLIVV
                   ::  .: . ::: :..        :  :..: ..  ::..  .::.. 
NP_001 MTENSDKVPIALVGPDDVEFCSPPAYATLTVK----PSSPARLLKVGAVVLISGAVLLLF
               10        20        30            40        50      

       50        60         70        80        90          100    
pF1KE2 VIVGALLMGLHMSQKHTEMV-LEMSIGAPEAQQRLALSEHLVTTATFSIGS---TGLVVY
         .::. .  . :..:   :   :::..   .  . ..    .  ::..::    ...: 
NP_001 GAIGAFYF-WKGSDSHIYNVHYTMSINGKLQDGSMEIDAG-NNLETFKMGSGAEEAIAVN
         60         70        80        90        100       110    

          110       120       130       140       150       160    
pF1KE2 DYQQLLIAYKPAPGTCCYIMKIAPESIPSLEALNRKVHNFQMECSLQAKPAVPTSKLGQA
       :.:. . . . : :  :::   .   :: . :....    ..  .:..:  .:..   ..
NP_001 DFQNGITGIRFAGGEKCYIKAQVKARIPEVGAVTKQ----SISSKLEGK-IMPVKYEENS
          120       130       140       150            160         

          170       180       190                                  
pF1KE2 EGRDAGSAPSGGDPAFLGMAVNTLCGEVPLYYI                           
           : . :   : .::.  :  :::..:....                           
NP_001 LIWVAVDQPVK-DNSFLSSKVLELCGDLPIFWLKPTYPKEIQRERREVVRKIVPTTTKRP
     170       180        190       200       210       220        

NP_001 HSGPRSNPGAGRLNNETRPSVQEDSQAFNPDNPYHQEGESMTFDPRLDHEGICCIECRRS
      230       240       250       260       270       280        

>>NP_008946 (OMIM: 605147) leukocyte cell-derived chemot  (334 aa)
 initn: 115 init1:  59 opt: 148  Z-score: 189.6  bits: 42.7 E(85410): 0.0008
Smith-Waterman score: 148; 24.9% identity (55.2% similar) in 201 aa overlap (3-197:13-201)

                         10        20        30        40          
pF1KE2           MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVV--VVLIVV
                   ::  .: . ::: :..        :  :..: ..  ::..  .::.. 
NP_008 MTENSDKVPIALVGPDDVEFCSPPAYATLTVK----PSSPARLLKVGAVVLISGAVLLLF
               10        20        30            40        50      

       50        60         70        80        90          100    
pF1KE2 VIVGALLMGLHMSQKHTEMV-LEMSIGAPEAQQRLALSEHLVTTATFSIGS---TGLVVY
         .::. .  . :..:   :   :::..   .  . ..    .  ::..::    ...: 
NP_008 GAIGAFYF-WKGSDSHIYNVHYTMSINGKLQDGSMEIDAG-NNLETFKMGSGAEEAIAVN
         60         70        80        90        100       110    

          110       120       130       140       150       160    
pF1KE2 DYQQLLIAYKPAPGTCCYIMKIAPESIPSLEALNRKVHNFQMECSLQAKPAVPTSKLGQA
       :.:. . . . : :  :::   .   :: . :....    ..  .:..:  .:..   ..
NP_008 DFQNGITGIRFAGGEKCYIKAQVKARIPEVGAVTKQ----SISSKLEGK-IMPVKYEENS
          120       130       140       150            160         

          170       180       190                                  
pF1KE2 EGRDAGSAPSGGDPAFLGMAVNTLCGEVPLYYI                           
           : . :   : .::.  :  :::..:....                           
NP_008 LIWVAVDQPVK-DNSFLSSKVLELCGDLPIFWLKPTYPKEIQRERREVVRKIVPTTTKRP
     170       180        190       200       210       220        

NP_008 HSGPRSNPGAGRLNNETRPSVQEDSQAFNPDNPYHQQEGESMTFDPRLDHEGICCIECRR
      230       240       250       260       270       280        

>>XP_011533200 (OMIM: 605147) PREDICTED: leukocyte cell-  (364 aa)
 initn: 115 init1:  59 opt: 148  Z-score: 189.1  bits: 42.7 E(85410): 0.00086
Smith-Waterman score: 148; 24.9% identity (55.2% similar) in 201 aa overlap (3-197:40-228)

                                           10        20        30  
pF1KE2                             MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVH
                                     ::  .: . ::: :..        :  :..
XP_011 RSQGAQGVSKCLTPPAANMTENSDKVPIALVGPDDVEFCSPPAYATLTVK----PSSPAR
      10        20        30        40        50            60     

             40          50        60         70        80         
pF1KE2 LKRLLIVVVV--VVLIVVVIVGALLMGLHMSQKHTEMV-LEMSIGAPEAQQRLALSEHLV
       : ..  ::..  .::..   .::. .  . :..:   :   :::..   .  . ..    
XP_011 LLKVGAVVLISGAVLLLFGAIGAFYF-WKGSDSHIYNVHYTMSINGKLQDGSMEIDAG-N
          70        80        90        100       110       120    

      90          100       110       120       130       140      
pF1KE2 TTATFSIGS---TGLVVYDYQQLLIAYKPAPGTCCYIMKIAPESIPSLEALNRKVHNFQM
       .  ::..::    ...: :.:. . . . : :  :::   .   :: . :....    ..
XP_011 NLETFKMGSGAEEAIAVNDFQNGITGIRFAGGEKCYIKAQVKARIPEVGAVTKQ----SI
           130       140       150       160       170             

        150       160       170       180       190                
pF1KE2 ECSLQAKPAVPTSKLGQAEGRDAGSAPSGGDPAFLGMAVNTLCGEVPLYYI         
         .:..:  .:..   ..    : . :   : .::.  :  :::..:....         
XP_011 SSKLEGK-IMPVKYEENSLIWVAVDQPVK-DNSFLSSKVLELCGDLPIFWLKPTYPKEIF
     180        190       200        210       220       230       

XP_011 AEIQRERREVVRKIVPTTTKRPHSGPRSNPGAGRLNNETRPSVQEDSQAFNPDNPYHQEG
       240       250       260       270       280       290       




197 residues in 1 query   sequences
60892289 residues in 85410 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Dec 21 11:14:00 2016 done: Wed Dec 21 11:14:01 2016
 Total Scan time:  6.320 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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