Result of FASTA (omim) for pF1KE2365
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2365, 243 aa
  1>>>pF1KE2365 243 - 243 aa - 243 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5977+/-0.000338; mu= 13.2675+/- 0.021
 mean_var=84.7374+/-17.082, 0's: 0 Z-trim(115.9): 55  B-trim: 1498 in 1/55
 Lambda= 0.139327
 statistics sampled from 26621 (26676) to 26621 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.313), width:  16
 Scan time:  7.060

The best scores are:                                      opt bits E(85289)
NP_757362 (OMIM: 186730) T-cell surface glycoprote ( 243) 1619 334.9 7.5e-92
NP_004922 (OMIM: 186730) T-cell surface glycoprote ( 210) 1367 284.2 1.2e-76
NP_742099 (OMIM: 186730) T-cell surface glycoprote ( 221) 1367 284.3 1.2e-76
XP_011531466 (OMIM: 186730) PREDICTED: T-cell surf ( 246) 1367 284.3 1.3e-76
NP_001171571 (OMIM: 186730) T-cell surface glycopr ( 198) 1089 228.3 7.5e-60
NP_742100 (OMIM: 186730) T-cell surface glycoprote ( 213) 1089 228.4 7.9e-60


>>NP_757362 (OMIM: 186730) T-cell surface glycoprotein C  (243 aa)
 initn: 1619 init1: 1619 opt: 1619  Z-score: 1770.0  bits: 334.9 E(85289): 7.5e-92
Smith-Waterman score: 1619; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)

               10        20        30        40        50        60
pF1KE2 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_757 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_757 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_757 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 LVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_757 LVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI
              190       200       210       220       230       240

          
pF1KE2 LKT
       :::
NP_757 LKT
          

>>NP_004922 (OMIM: 186730) T-cell surface glycoprotein C  (210 aa)
 initn: 1367 init1: 1367 opt: 1367  Z-score: 1497.1  bits: 284.2 E(85289): 1.2e-76
Smith-Waterman score: 1367; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:1-207)

               10        20        30        40        50        60
pF1KE2 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 LVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI
       :::::::::::::::::::::::::::                                 
NP_004 LVLLVSLGVAIHLCCRRRRARLRFMKQFYK                              
              190       200       210                              

>>NP_742099 (OMIM: 186730) T-cell surface glycoprotein C  (221 aa)
 initn: 1367 init1: 1367 opt: 1367  Z-score: 1496.8  bits: 284.3 E(85289): 1.2e-76
Smith-Waterman score: 1367; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:1-207)

               10        20        30        40        50        60
pF1KE2 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_742 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_742 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_742 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 LVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI
       :::::::::::::::::::::::::::                                 
NP_742 LVLLVSLGVAIHLCCRRRRARLRFMKQLRLHPLEKCSRMDY                   
              190       200       210       220                    

>>XP_011531466 (OMIM: 186730) PREDICTED: T-cell surface   (246 aa)
 initn: 1367 init1: 1367 opt: 1367  Z-score: 1496.2  bits: 284.3 E(85289): 1.3e-76
Smith-Waterman score: 1367; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:1-207)

               10        20        30        40        50        60
pF1KE2 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 LVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI
       :::::::::::::::::::::::::::                                 
XP_011 LVLLVSLGVAIHLCCRRRRARLRFMKQKFNIVCLKISGFTTCCCFQILQMSREYGFGVLL
              190       200       210       220       230       240

>>NP_001171571 (OMIM: 186730) T-cell surface glycoprotei  (198 aa)
 initn: 1089 init1: 1089 opt: 1089  Z-score: 1195.5  bits: 228.3 E(85289): 7.5e-60
Smith-Waterman score: 1089; 100.0% identity (100.0% similar) in 165 aa overlap (1-165:1-165)

               10        20        30        40        50        60
pF1KE2 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
       :::::::::::::::::::::::::::::::::::::::::::::               
NP_001 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGLKGKVYQEPLSPNAC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 LVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI
                                                                   
NP_001 MDTTAILQPHRSCLTHGS                                          
              190                                                  

>>NP_742100 (OMIM: 186730) T-cell surface glycoprotein C  (213 aa)
 initn: 1407 init1: 1089 opt: 1089  Z-score: 1195.1  bits: 228.4 E(85289): 7.9e-60
Smith-Waterman score: 1351; 87.7% identity (87.7% similar) in 243 aa overlap (1-243:1-213)

               10        20        30        40        50        60
pF1KE2 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_742 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_742 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
       :::::::::::::::::::::::::::::::::::::::::::::               
NP_742 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKG---------------
              130       140       150       160                    

              190       200       210       220       230       240
pF1KE2 LVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI
                      :::::::::::::::::::::::::::::::::::::::::::::
NP_742 ---------------RRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI
                        170       180       190       200       210

          
pF1KE2 LKT
       :::
NP_742 LKT
          




243 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:23:57 2016 done: Sun Nov  6 18:23:58 2016
 Total Scan time:  7.060 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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