Result of FASTA (omim) for pF1KB7666
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7666, 371 aa
  1>>>pF1KB7666 371 - 371 aa - 371 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.5977+/-0.000371; mu= -1.6759+/- 0.023
 mean_var=305.0862+/-63.183, 0's: 0 Z-trim(122.5): 146  B-trim: 494 in 2/59
 Lambda= 0.073428
 statistics sampled from 40584 (40736) to 40584 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.478), width:  16
 Scan time:  8.210

The best scores are:                                      opt bits E(85289)
NP_001124185 (OMIM: 153245) lymphoid enhancer-bind ( 371) 2609 289.5 8.3e-78
NP_001124186 (OMIM: 153245) lymphoid enhancer-bind ( 386) 2546 282.9 8.7e-76
NP_001159591 (OMIM: 153245) lymphoid enhancer-bind ( 303) 2128 238.5 1.6e-62
XP_005263105 (OMIM: 153245) PREDICTED: lymphoid en ( 318) 2065 231.8 1.7e-60
NP_057353 (OMIM: 153245) lymphoid enhancer-binding ( 399) 1524 174.6 3.5e-43
XP_005263103 (OMIM: 153245) PREDICTED: lymphoid en ( 414) 1524 174.6 3.6e-43
XP_006714296 (OMIM: 153245) PREDICTED: lymphoid en ( 299) 1058 125.1   2e-28
XP_005263104 (OMIM: 153245) PREDICTED: lymphoid en ( 346) 1043 123.6 6.8e-28
NP_003193 (OMIM: 189908) transcription factor 7 is ( 384) 1042 123.5 7.9e-28
XP_006714742 (OMIM: 189908) PREDICTED: transcripti ( 429) 1039 123.3 1.1e-27
XP_006714747 (OMIM: 189908) PREDICTED: transcripti ( 365) 1032 122.4 1.6e-27
NP_998813 (OMIM: 189908) transcription factor 7 is ( 269)  851 103.1 7.6e-22
NP_963963 (OMIM: 189908) transcription factor 7 is ( 269)  851 103.1 7.6e-22
XP_011541914 (OMIM: 189908) PREDICTED: transcripti ( 244)  848 102.8 8.8e-22
NP_963965 (OMIM: 189908) transcription factor 7 is ( 268)  848 102.8 9.4e-22
NP_001128323 (OMIM: 189908) transcription factor 7 ( 269)  848 102.8 9.5e-22
XP_006714749 (OMIM: 189908) PREDICTED: transcripti ( 314)  848 102.9 1.1e-21
XP_011541911 (OMIM: 189908) PREDICTED: transcripti ( 289)  845 102.5 1.2e-21
NP_001185460 (OMIM: 125853,602228) transcription f ( 465)  805 98.5 3.3e-20
NP_001139758 (OMIM: 125853,602228) transcription f ( 442)  800 98.0 4.6e-20
NP_001185459 (OMIM: 125853,602228) transcription f ( 408)  798 97.7   5e-20
XP_016872082 (OMIM: 125853,602228) PREDICTED: tran ( 602)  801 98.2 5.3e-20
NP_001139746 (OMIM: 125853,602228) transcription f ( 602)  801 98.2 5.3e-20
XP_005270153 (OMIM: 125853,602228) PREDICTED: tran ( 482)  798 97.8 5.6e-20
XP_005270161 (OMIM: 125853,602228) PREDICTED: tran ( 438)  795 97.4 6.5e-20
XP_005270141 (OMIM: 125853,602228) PREDICTED: tran ( 619)  798 97.9 6.7e-20
XP_016872081 (OMIM: 125853,602228) PREDICTED: tran ( 619)  798 97.9 6.7e-20
XP_005270159 (OMIM: 125853,602228) PREDICTED: tran ( 461)  795 97.4 6.8e-20
XP_005270160 (OMIM: 125853,602228) PREDICTED: tran ( 447)  794 97.3 7.1e-20
NP_001139757 (OMIM: 125853,602228) transcription f ( 579)  796 97.6 7.4e-20
NP_001185455 (OMIM: 125853,602228) transcription f ( 579)  796 97.6 7.4e-20
NP_001185457 (OMIM: 125853,602228) transcription f ( 459)  793 97.2 7.8e-20
NP_001185458 (OMIM: 125853,602228) transcription f ( 459)  793 97.2 7.8e-20
XP_005270157 (OMIM: 125853,602228) PREDICTED: tran ( 470)  793 97.2   8e-20
XP_016872080 (OMIM: 125853,602228) PREDICTED: tran ( 620)  795 97.6 8.3e-20
XP_011538413 (OMIM: 125853,602228) PREDICTED: tran ( 596)  793 97.3 9.4e-20
NP_110383 (OMIM: 125853,602228) transcription fact ( 596)  793 97.3 9.4e-20
NP_001139755 (OMIM: 125853,602228) transcription f ( 489)  791 97.0 9.5e-20
XP_016872084 (OMIM: 125853,602228) PREDICTED: tran ( 513)  791 97.1 9.8e-20
NP_001185456 (OMIM: 125853,602228) transcription f ( 455)  788 96.7 1.1e-19
NP_001139756 (OMIM: 125853,602228) transcription f ( 455)  788 96.7 1.1e-19
XP_005270146 (OMIM: 125853,602228) PREDICTED: tran ( 584)  790 97.0 1.2e-19
XP_016872085 (OMIM: 125853,602228) PREDICTED: tran ( 478)  788 96.7 1.2e-19
XP_005270158 (OMIM: 125853,602228) PREDICTED: tran ( 464)  787 96.6 1.2e-19
XP_005270152 (OMIM: 125853,602228) PREDICTED: tran ( 518)  788 96.8 1.2e-19
NP_001185454 (OMIM: 125853,602228) transcription f ( 476)  787 96.6 1.2e-19
XP_005270142 (OMIM: 125853,602228) PREDICTED: tran ( 607)  789 96.9 1.3e-19
XP_005270145 (OMIM: 125853,602228) PREDICTED: tran ( 592)  788 96.8 1.4e-19
XP_011538412 (OMIM: 125853,602228) PREDICTED: tran ( 640)  788 96.8 1.4e-19
XP_016872076 (OMIM: 125853,602228) PREDICTED: tran ( 663)  788 96.9 1.5e-19


>>NP_001124185 (OMIM: 153245) lymphoid enhancer-binding   (371 aa)
 initn: 2609 init1: 2609 opt: 2609  Z-score: 1517.9  bits: 289.5 E(85289): 8.3e-78
Smith-Waterman score: 2609; 100.0% identity (100.0% similar) in 371 aa overlap (1-371:1-371)

               10        20        30        40        50        60
pF1KB7 MPQLSGGGGGGGGDPELCATDEMIPFKDEGDPQKEKIFAEISHPEEEGDLADIKSSLVNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPQLSGGGGGGGGDPELCATDEMIPFKDEGDPQKEKIFAEISHPEEEGDLADIKSSLVNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SEIIPASNGHEVARQAQTSQEPYHDKAREHPDDGKHPDGGLYNKGPSYSSYSGYIMMPNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SEIIPASNGHEVARQAQTSQEPYHDKAREHPDDGKHPDGGLYNKGPSYSSYSGYIMMPNM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 NNDPYMSNGSLSPPIPRTSNKVPVVQPSHAVHPLTPLITYSDEHFSPGSHPSHIPSDVNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNDPYMSNGSLSPPIPRTSNKVPVVQPSHAVHPLTPLITYSDEHFSPGSHPSHIPSDVNS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 KQGMSRHPPAPDIPTFYPLSPGGVGQITPPLGWFSHHMIPGPPGPHTTGIPHPAIVTPQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KQGMSRHPPAPDIPTFYPLSPGGVGQITPPLGWFSHHMIPGPPGPHTTGIPHPAIVTPQV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 KQEHPHTDSDLMHVKPQHEQRKEQEPKRPHIKKPLNAFMLYMKEMRANVVAECTLKESAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KQEHPHTDSDLMHVKPQHEQRKEQEPKRPHIKKPLNAFMLYMKEMRANVVAECTLKESAA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 INQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREKLQESAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 INQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREKLQESAS
              310       320       330       340       350       360

              370 
pF1KB7 GTGPRMTAAYI
       :::::::::::
NP_001 GTGPRMTAAYI
              370 

>>NP_001124186 (OMIM: 153245) lymphoid enhancer-binding   (386 aa)
 initn: 2544 init1: 2544 opt: 2546  Z-score: 1481.6  bits: 282.9 E(85289): 8.7e-76
Smith-Waterman score: 2546; 99.5% identity (99.5% similar) in 365 aa overlap (1-365:1-364)

               10        20        30        40        50        60
pF1KB7 MPQLSGGGGGGGGDPELCATDEMIPFKDEGDPQKEKIFAEISHPEEEGDLADIKSSLVNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPQLSGGGGGGGGDPELCATDEMIPFKDEGDPQKEKIFAEISHPEEEGDLADIKSSLVNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SEIIPASNGHEVARQAQTSQEPYHDKAREHPDDGKHPDGGLYNKGPSYSSYSGYIMMPNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SEIIPASNGHEVARQAQTSQEPYHDKAREHPDDGKHPDGGLYNKGPSYSSYSGYIMMPNM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 NNDPYMSNGSLSPPIPRTSNKVPVVQPSHAVHPLTPLITYSDEHFSPGSHPSHIPSDVNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNDPYMSNGSLSPPIPRTSNKVPVVQPSHAVHPLTPLITYSDEHFSPGSHPSHIPSDVNS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 KQGMSRHPPAPDIPTFYPLSPGGVGQITPPLGWFSHHMIPGPPGPHTTGIPHPAIVTPQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KQGMSRHPPAPDIPTFYPLSPGGVGQITPPLGWFSHHMIPGPPGPHTTGIPHPAIVTPQV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 KQEHPHTDSDLMHVKPQHEQRKEQEPKRPHIKKPLNAFMLYMKEMRANVVAECTLKESAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KQEHPHTDSDLMHVKPQHEQRKEQEPKRPHIKKPLNAFMLYMKEMRANVVAECTLKESAA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 INQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREKLQESAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 INQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREKLQESAS
              310       320       330       340       350       360

              370                 
pF1KB7 GTGPRMTAAYI                
       : : :                      
NP_001 G-GKRSSFPTCKAKAATPGPLLEMEAC
               370       380      

>>NP_001159591 (OMIM: 153245) lymphoid enhancer-binding   (303 aa)
 initn: 2128 init1: 2128 opt: 2128  Z-score: 1243.6  bits: 238.5 E(85289): 1.6e-62
Smith-Waterman score: 2128; 100.0% identity (100.0% similar) in 301 aa overlap (71-371:3-303)

               50        60        70        80        90       100
pF1KB7 ISHPEEEGDLADIKSSLVNESEIIPASNGHEVARQAQTSQEPYHDKAREHPDDGKHPDGG
                                     ::::::::::::::::::::::::::::::
NP_001                             MAEVARQAQTSQEPYHDKAREHPDDGKHPDGG
                                           10        20        30  

              110       120       130       140       150       160
pF1KB7 LYNKGPSYSSYSGYIMMPNMNNDPYMSNGSLSPPIPRTSNKVPVVQPSHAVHPLTPLITY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LYNKGPSYSSYSGYIMMPNMNNDPYMSNGSLSPPIPRTSNKVPVVQPSHAVHPLTPLITY
             40        50        60        70        80        90  

              170       180       190       200       210       220
pF1KB7 SDEHFSPGSHPSHIPSDVNSKQGMSRHPPAPDIPTFYPLSPGGVGQITPPLGWFSHHMIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SDEHFSPGSHPSHIPSDVNSKQGMSRHPPAPDIPTFYPLSPGGVGQITPPLGWFSHHMIP
            100       110       120       130       140       150  

              230       240       250       260       270       280
pF1KB7 GPPGPHTTGIPHPAIVTPQVKQEHPHTDSDLMHVKPQHEQRKEQEPKRPHIKKPLNAFML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPPGPHTTGIPHPAIVTPQVKQEHPHTDSDLMHVKPQHEQRKEQEPKRPHIKKPLNAFML
            160       170       180       190       200       210  

              290       300       310       320       330       340
pF1KB7 YMKEMRANVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YMKEMRANVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSA
            220       230       240       250       260       270  

              350       360       370 
pF1KB7 RDNYGKKKKRKREKLQESASGTGPRMTAAYI
       :::::::::::::::::::::::::::::::
NP_001 RDNYGKKKKRKREKLQESASGTGPRMTAAYI
            280       290       300   

>>XP_005263105 (OMIM: 153245) PREDICTED: lymphoid enhanc  (318 aa)
 initn: 2063 init1: 2063 opt: 2065  Z-score: 1207.3  bits: 231.8 E(85289): 1.7e-60
Smith-Waterman score: 2065; 99.3% identity (99.3% similar) in 295 aa overlap (71-365:3-296)

               50        60        70        80        90       100
pF1KB7 ISHPEEEGDLADIKSSLVNESEIIPASNGHEVARQAQTSQEPYHDKAREHPDDGKHPDGG
                                     ::::::::::::::::::::::::::::::
XP_005                             MAEVARQAQTSQEPYHDKAREHPDDGKHPDGG
                                           10        20        30  

              110       120       130       140       150       160
pF1KB7 LYNKGPSYSSYSGYIMMPNMNNDPYMSNGSLSPPIPRTSNKVPVVQPSHAVHPLTPLITY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LYNKGPSYSSYSGYIMMPNMNNDPYMSNGSLSPPIPRTSNKVPVVQPSHAVHPLTPLITY
             40        50        60        70        80        90  

              170       180       190       200       210       220
pF1KB7 SDEHFSPGSHPSHIPSDVNSKQGMSRHPPAPDIPTFYPLSPGGVGQITPPLGWFSHHMIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SDEHFSPGSHPSHIPSDVNSKQGMSRHPPAPDIPTFYPLSPGGVGQITPPLGWFSHHMIP
            100       110       120       130       140       150  

              230       240       250       260       270       280
pF1KB7 GPPGPHTTGIPHPAIVTPQVKQEHPHTDSDLMHVKPQHEQRKEQEPKRPHIKKPLNAFML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GPPGPHTTGIPHPAIVTPQVKQEHPHTDSDLMHVKPQHEQRKEQEPKRPHIKKPLNAFML
            160       170       180       190       200       210  

              290       300       310       320       330       340
pF1KB7 YMKEMRANVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YMKEMRANVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSA
            220       230       240       250       260       270  

              350       360       370                 
pF1KB7 RDNYGKKKKRKREKLQESASGTGPRMTAAYI                
       ::::::::::::::::::::: : :                      
XP_005 RDNYGKKKKRKREKLQESASG-GKRSSFPTCKAKAATPGPLLEMEAC
            280       290        300       310        

>>NP_057353 (OMIM: 153245) lymphoid enhancer-binding fac  (399 aa)
 initn: 1514 init1: 1514 opt: 1524  Z-score: 896.3  bits: 174.6 E(85289): 3.5e-43
Smith-Waterman score: 2543; 93.0% identity (93.0% similar) in 399 aa overlap (1-371:1-399)

               10        20        30        40        50        60
pF1KB7 MPQLSGGGGGGGGDPELCATDEMIPFKDEGDPQKEKIFAEISHPEEEGDLADIKSSLVNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MPQLSGGGGGGGGDPELCATDEMIPFKDEGDPQKEKIFAEISHPEEEGDLADIKSSLVNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SEIIPASNGHEVARQAQTSQEPYHDKAREHPDDGKHPDGGLYNKGPSYSSYSGYIMMPNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 SEIIPASNGHEVARQAQTSQEPYHDKAREHPDDGKHPDGGLYNKGPSYSSYSGYIMMPNM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 NNDPYMSNGSLSPPIPRTSNKVPVVQPSHAVHPLTPLITYSDEHFSPGSHPSHIPSDVNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 NNDPYMSNGSLSPPIPRTSNKVPVVQPSHAVHPLTPLITYSDEHFSPGSHPSHIPSDVNS
              130       140       150       160       170       180

              190       200       210                              
pF1KB7 KQGMSRHPPAPDIPTFYPLSPGGVGQITPPLGW---------------------------
       :::::::::::::::::::::::::::::::::                           
NP_057 KQGMSRHPPAPDIPTFYPLSPGGVGQITPPLGWQGQPVYPITGGFRQPYPSSLSVDTSMS
              190       200       210       220       230       240

            220       230       240       250       260       270  
pF1KB7 -FSHHMIPGPPGPHTTGIPHPAIVTPQVKQEHPHTDSDLMHVKPQHEQRKEQEPKRPHIK
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 RFSHHMIPGPPGPHTTGIPHPAIVTPQVKQEHPHTDSDLMHVKPQHEQRKEQEPKRPHIK
              250       260       270       280       290       300

            280       290       300       310       320       330  
pF1KB7 KPLNAFMLYMKEMRANVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 KPLNAFMLYMKEMRANVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHM
              310       320       330       340       350       360

            340       350       360       370 
pF1KB7 QLYPGWSARDNYGKKKKRKREKLQESASGTGPRMTAAYI
       :::::::::::::::::::::::::::::::::::::::
NP_057 QLYPGWSARDNYGKKKKRKREKLQESASGTGPRMTAAYI
              370       380       390         

>>XP_005263103 (OMIM: 153245) PREDICTED: lymphoid enhanc  (414 aa)
 initn: 1514 init1: 1514 opt: 1524  Z-score: 896.1  bits: 174.6 E(85289): 3.6e-43
Smith-Waterman score: 2480; 92.4% identity (92.4% similar) in 393 aa overlap (1-365:1-392)

               10        20        30        40        50        60
pF1KB7 MPQLSGGGGGGGGDPELCATDEMIPFKDEGDPQKEKIFAEISHPEEEGDLADIKSSLVNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MPQLSGGGGGGGGDPELCATDEMIPFKDEGDPQKEKIFAEISHPEEEGDLADIKSSLVNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SEIIPASNGHEVARQAQTSQEPYHDKAREHPDDGKHPDGGLYNKGPSYSSYSGYIMMPNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SEIIPASNGHEVARQAQTSQEPYHDKAREHPDDGKHPDGGLYNKGPSYSSYSGYIMMPNM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 NNDPYMSNGSLSPPIPRTSNKVPVVQPSHAVHPLTPLITYSDEHFSPGSHPSHIPSDVNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NNDPYMSNGSLSPPIPRTSNKVPVVQPSHAVHPLTPLITYSDEHFSPGSHPSHIPSDVNS
              130       140       150       160       170       180

              190       200       210                              
pF1KB7 KQGMSRHPPAPDIPTFYPLSPGGVGQITPPLGW---------------------------
       :::::::::::::::::::::::::::::::::                           
XP_005 KQGMSRHPPAPDIPTFYPLSPGGVGQITPPLGWQGQPVYPITGGFRQPYPSSLSVDTSMS
              190       200       210       220       230       240

            220       230       240       250       260       270  
pF1KB7 -FSHHMIPGPPGPHTTGIPHPAIVTPQVKQEHPHTDSDLMHVKPQHEQRKEQEPKRPHIK
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RFSHHMIPGPPGPHTTGIPHPAIVTPQVKQEHPHTDSDLMHVKPQHEQRKEQEPKRPHIK
              250       260       270       280       290       300

            280       290       300       310       320       330  
pF1KB7 KPLNAFMLYMKEMRANVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KPLNAFMLYMKEMRANVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHM
              310       320       330       340       350       360

            340       350       360       370                 
pF1KB7 QLYPGWSARDNYGKKKKRKREKLQESASGTGPRMTAAYI                
       ::::::::::::::::::::::::::::: : :                      
XP_005 QLYPGWSARDNYGKKKKRKREKLQESASG-GKRSSFPTCKAKAATPGPLLEMEAC
              370       380        390       400       410    

>>XP_006714296 (OMIM: 153245) PREDICTED: lymphoid enhanc  (299 aa)
 initn: 1031 init1: 1031 opt: 1058  Z-score: 631.1  bits: 125.1 E(85289): 2e-28
Smith-Waterman score: 1679; 89.2% identity (89.2% similar) in 278 aa overlap (116-365:1-277)

          90       100       110       120       130       140     
pF1KB7 KAREHPDDGKHPDGGLYNKGPSYSSYSGYIMMPNMNNDPYMSNGSLSPPIPRTSNKVPVV
                                     ::::::::::::::::::::::::::::::
XP_006                               MMPNMNNDPYMSNGSLSPPIPRTSNKVPVV
                                             10        20        30

         150       160       170       180       190       200     
pF1KB7 QPSHAVHPLTPLITYSDEHFSPGSHPSHIPSDVNSKQGMSRHPPAPDIPTFYPLSPGGVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QPSHAVHPLTPLITYSDEHFSPGSHPSHIPSDVNSKQGMSRHPPAPDIPTFYPLSPGGVG
               40        50        60        70        80        90

         210                                   220       230       
pF1KB7 QITPPLGW----------------------------FSHHMIPGPPGPHTTGIPHPAIVT
       ::::::::                            ::::::::::::::::::::::::
XP_006 QITPPLGWQGQPVYPITGGFRQPYPSSLSVDTSMSRFSHHMIPGPPGPHTTGIPHPAIVT
              100       110       120       130       140       150

       240       250       260       270       280       290       
pF1KB7 PQVKQEHPHTDSDLMHVKPQHEQRKEQEPKRPHIKKPLNAFMLYMKEMRANVVAECTLKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PQVKQEHPHTDSDLMHVKPQHEQRKEQEPKRPHIKKPLNAFMLYMKEMRANVVAECTLKE
              160       170       180       190       200       210

       300       310       320       330       340       350       
pF1KB7 SAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREKLQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREKLQE
              220       230       240       250       260       270

       360       370                 
pF1KB7 SASGTGPRMTAAYI                
       :::: : :                      
XP_006 SASG-GKRSSFPTCKAKAATPGPLLEMEAC
               280       290         

>>XP_005263104 (OMIM: 153245) PREDICTED: lymphoid enhanc  (346 aa)
 initn: 1033 init1: 1033 opt: 1043  Z-score: 621.7  bits: 123.6 E(85289): 6.8e-28
Smith-Waterman score: 1999; 90.7% identity (90.7% similar) in 323 aa overlap (71-365:3-324)

               50        60        70        80        90       100
pF1KB7 ISHPEEEGDLADIKSSLVNESEIIPASNGHEVARQAQTSQEPYHDKAREHPDDGKHPDGG
                                     ::::::::::::::::::::::::::::::
XP_005                             MAEVARQAQTSQEPYHDKAREHPDDGKHPDGG
                                           10        20        30  

              110       120       130       140       150       160
pF1KB7 LYNKGPSYSSYSGYIMMPNMNNDPYMSNGSLSPPIPRTSNKVPVVQPSHAVHPLTPLITY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LYNKGPSYSSYSGYIMMPNMNNDPYMSNGSLSPPIPRTSNKVPVVQPSHAVHPLTPLITY
             40        50        60        70        80        90  

              170       180       190       200       210          
pF1KB7 SDEHFSPGSHPSHIPSDVNSKQGMSRHPPAPDIPTFYPLSPGGVGQITPPLGW-------
       :::::::::::::::::::::::::::::::::::::::::::::::::::::       
XP_005 SDEHFSPGSHPSHIPSDVNSKQGMSRHPPAPDIPTFYPLSPGGVGQITPPLGWQGQPVYP
            100       110       120       130       140       150  

                                220       230       240       250  
pF1KB7 ---------------------FSHHMIPGPPGPHTTGIPHPAIVTPQVKQEHPHTDSDLM
                            :::::::::::::::::::::::::::::::::::::::
XP_005 ITGGFRQPYPSSLSVDTSMSRFSHHMIPGPPGPHTTGIPHPAIVTPQVKQEHPHTDSDLM
            160       170       180       190       200       210  

            260       270       280       290       300       310  
pF1KB7 HVKPQHEQRKEQEPKRPHIKKPLNAFMLYMKEMRANVVAECTLKESAAINQILGRRWHAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HVKPQHEQRKEQEPKRPHIKKPLNAFMLYMKEMRANVVAECTLKESAAINQILGRRWHAL
            220       230       240       250       260       270  

            320       330       340       350       360       370  
pF1KB7 SREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREKLQESASGTGPRMTAAYI 
       ::::::::::::::::::::::::::::::::::::::::::::::::: : :       
XP_005 SREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREKLQESASG-GKRSSFPTCK
            280       290       300       310       320        330 

XP_005 AKAATPGPLLEMEAC
             340      

>>NP_003193 (OMIM: 189908) transcription factor 7 isofor  (384 aa)
 initn: 867 init1: 568 opt: 1042  Z-score: 620.6  bits: 123.5 E(85289): 7.9e-28
Smith-Waterman score: 1062; 50.3% identity (68.1% similar) in 386 aa overlap (1-365:1-362)

               10        20        30        40        50        60
pF1KB7 MPQLSGGGGGGGGDPELCATDEMIPFKDEGDPQKEKIFAEISHPEEEGDLADIKSSLVNE
       ::::..::::.::  .: : ::.. :.:::. : .:     . ::.  :::..:::::::
NP_003 MPQLDSGGGGAGGGDDLGAPDELLAFQDEGEEQDDKSRDSAAGPER--DLAELKSSLVNE
               10        20        30        40          50        

                     70                80        90          100   
pF1KB7 SEI------IPASNGH--------EVARQAQTSQEPYHDKAREHPDDG-KHPD--GGLYN
       ::       ::.  :         :.  . ...:. . ::  :  .:: : :.  .:.:.
NP_003 SEGAAGGAGIPGVPGAGAGARGEAEALGREHAAQRLFPDKLPEPLEDGLKAPECTSGMYK
       60        70        80        90       100       110        

           110       120       130       140       150       160   
pF1KB7 KGPSYSSYSGYIMMPNMNNDPYMSNGSLSPPIPRTSNKVPVVQPSHAVHPLTPLITYSDE
       .    . ::.. ..  :.  :  . :.   : :   .   . :: :.:  :.    :  :
NP_003 E----TVYSAFNLL--MHYPPPSGAGQHPQPQPPLHK---ANQPPHGVPQLS---LY--E
          120         130       140          150       160         

            170       180       190       200       210            
pF1KB7 HF-SPGSHPSHIPSDVNSKQGMSRHPPAPDIPTFYPLSPGGVGQITPPLGWFSHHMI---
       :: ::  ::.  :.:...:: . :   .::.  :: :. :..::.   ..::.:  .   
NP_003 HFNSP--HPTPAPADISQKQ-VHRPLQTPDLSGFYSLTSGSMGQLPHTVSWFTHPSLMLG
            170       180        190       200       210       220 

     220       230       240       250       260       270         
pF1KB7 PGPPGPHTTGIPHPAIVTPQVKQEHPHTDSDLMHVKPQHEQRKEQEPKRPHIKKPLNAFM
        : :: : ..::::::: :. :::    : .:   : : :.. :.: :.: :::::::::
NP_003 SGVPG-HPAAIPHPAIVPPSGKQELQPFDRNL---KTQAESKAEKEAKKPTIKKPLNAFM
              230       240       250          260       270       

     280       290       300       310       320       330         
pF1KB7 LYMKEMRANVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWS
       ::::::::.:.:::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LYMKEMRAKVIAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWS
       280       290       300       310       320       330       

     340       350       360       370                 
pF1KB7 ARDNYGKKKKRKREKLQESASGTGPRMTAAYI                
       :::::::::.:.::: :::..: : :                      
NP_003 ARDNYGKKKRRSREKHQESTTG-GKRNAFGTYPEKAAAPAPFLPMTVL
       340       350        360       370       380    

>>XP_006714742 (OMIM: 189908) PREDICTED: transcription f  (429 aa)
 initn: 865 init1: 566 opt: 1039  Z-score: 618.3  bits: 123.3 E(85289): 1.1e-27
Smith-Waterman score: 1059; 49.9% identity (68.0% similar) in 387 aa overlap (1-365:1-364)

               10        20        30        40        50        60
pF1KB7 MPQLSGGGGGGGGDPELCATDEMIPFKDEGDPQKEKIFAEISHPEEEGDLADIKSSLVNE
       ::::..::::.::  .: : ::.. :.:::. : .:     . ::.  :::..:::::::
XP_006 MPQLDSGGGGAGGGDDLGAPDELLAFQDEGEEQDDKSRDSAAGPER--DLAELKSSLVNE
               10        20        30        40          50        

                     70                80        90          100   
pF1KB7 SEI------IPASNGH--------EVARQAQTSQEPYHDKAREHPDDG-KHPD--GGLYN
       ::       ::.  :         :.  . ...:. . ::  :  .:: : :.  .:.:.
XP_006 SEGAAGGAGIPGVPGAGAGARGEAEALGREHAAQRLFPDKLPEPLEDGLKAPECTSGMYK
       60        70        80        90       100       110        

           110       120       130       140       150       160   
pF1KB7 KGPSYSSYSGYIMMPNMNNDPYMSNGSLSPPIPRTSNKVPVVQPSHAVHPLTPLITYSDE
       .    . ::.. ..  :.  :  . :.   : :   .   . :: :.:  :.    :  :
XP_006 E----TVYSAFNLL--MHYPPPSGAGQHPQPQPPLHK---ANQPPHGVPQLS---LY--E
          120         130       140          150       160         

            170       180       190       200       210            
pF1KB7 HF-SPGSHPSHIPSDVNSKQGMSRHPPAPDIPTFYPLSPGGVGQITPPLGWFSHHMI---
       :: ::  ::.  :.:...:: . :   .::.  :: :. :..::.   ..::.:  .   
XP_006 HFNSP--HPTPAPADISQKQ-VHRPLQTPDLSGFYSLTSGSMGQLPHTVSWFTHPSLMLG
            170       180        190       200       210       220 

     220       230       240       250       260       270         
pF1KB7 PGPPGPHTTGIPHPAIVTPQVKQEHPHTDSDLMHVKPQHEQRKEQEPKRPHIKKPLNAFM
        : :: : ..::::::: :. :::    : .:   : : :.. :.: :.: :::::::::
XP_006 SGVPG-HPAAIPHPAIVPPSGKQELQPFDRNL---KTQAESKAEKEAKKPTIKKPLNAFM
              230       240       250          260       270       

     280       290       300       310       320       330         
pF1KB7 LYMKEMRANVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWS
       ::::::::.:.:::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LYMKEMRAKVIAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWS
       280       290       300       310       320       330       

     340       350       360        370                            
pF1KB7 ARDNYGKKKKRKREKLQESASGTG-PRMTAAYI                           
       :::::::::.:.::: :::..  : :.                                 
XP_006 ARDNYGKKKRRSREKHQESTTDPGSPKKCRARFGLNQQTDWCGPCRWVCPHHRSPFALSC
       340       350       360       370       380       390       




371 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:52:41 2016 done: Tue Nov  8 10:52:42 2016
 Total Scan time:  8.210 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com