Result of FASTA (omim) for pF1KB6739
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6739, 98 aa
  1>>>pF1KB6739 98 - 98 aa - 98 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6630+/-0.000284; mu= 12.8859+/- 0.018
 mean_var=59.2022+/-11.447, 0's: 0 Z-trim(118.7): 34  B-trim: 0 in 0/54
 Lambda= 0.166688
 statistics sampled from 31804 (31838) to 31804 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.373), width:  16
 Scan time:  3.990

The best scores are:                                      opt bits E(85289)
NP_001556 (OMIM: 147310) C-X-C motif chemokine 10  (  98)  640 161.2 2.5e-40
NP_002407 (OMIM: 601704) C-X-C motif chemokine 9 p ( 125)  234 63.6 7.5e-11
NP_005400 (OMIM: 604852) C-X-C motif chemokine 11  (  94)  194 53.9 4.7e-08
NP_001289052 (OMIM: 604852) C-X-C motif chemokine  ( 106)  190 53.0   1e-07
NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 p ( 114)  186 52.0 2.1e-07
XP_006714126 (OMIM: 605149) PREDICTED: C-X-C motif ( 109)  167 47.4 4.8e-06
NP_006410 (OMIM: 605149) C-X-C motif chemokine 13  ( 109)  167 47.4 4.8e-06
NP_001502 (OMIM: 155730) growth-regulated alpha pr ( 107)  161 46.0 1.3e-05
NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 p ( 107)  160 45.7 1.5e-05
NP_002985 (OMIM: 600324) C-X-C motif chemokine 5 p ( 114)  159 45.5 1.9e-05
NP_002695 (OMIM: 121010) platelet basic protein pr ( 128)  158 45.3 2.4e-05
NP_002610 (OMIM: 173460) platelet factor 4 precurs ( 101)  150 43.3 7.7e-05
XP_005265753 (OMIM: 173460) PREDICTED: platelet fa ( 110)  150 43.4 8.2e-05
NP_002611 (OMIM: 173461) platelet factor 4 variant ( 104)  148 42.9 0.00011
NP_000575 (OMIM: 146930) interleukin-8 precursor [ (  99)  141 41.2 0.00034
NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 p ( 107)  135 39.7 0.00098
NP_001029058 (OMIM: 600835,609423) stromal cell-de ( 119)  131 38.8  0.0021
NP_000600 (OMIM: 600835,609423) stromal cell-deriv (  93)  128 38.0  0.0028
NP_954637 (OMIM: 600835,609423) stromal cell-deriv (  89)  127 37.8  0.0032
NP_005614 (OMIM: 602283) C-C motif chemokine 8 pre (  99)  123 36.8  0.0068


>>NP_001556 (OMIM: 147310) C-X-C motif chemokine 10 prec  (98 aa)
 initn: 640 init1: 640 opt: 640  Z-score: 844.9  bits: 161.2 E(85289): 2.5e-40
Smith-Waterman score: 640; 100.0% identity (100.0% similar) in 98 aa overlap (1-98:1-98)

               10        20        30        40        50        60
pF1KB6 MNQTAILICCLIFLTLSGIQGVPLSRTVRCTCISISNQPVNPRSLEKLEIIPASQFCPRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNQTAILICCLIFLTLSGIQGVPLSRTVRCTCISISNQPVNPRSLEKLEIIPASQFCPRV
               10        20        30        40        50        60

               70        80        90        
pF1KB6 EIIATMKKKGEKRCLNPESKAIKNLLKAVSKERSKRSP
       ::::::::::::::::::::::::::::::::::::::
NP_001 EIIATMKKKGEKRCLNPESKAIKNLLKAVSKERSKRSP
               70        80        90        

>>NP_002407 (OMIM: 601704) C-X-C motif chemokine 9 precu  (125 aa)
 initn: 234 init1: 136 opt: 234  Z-score: 315.8  bits: 63.6 E(85289): 7.5e-11
Smith-Waterman score: 234; 38.1% identity (72.2% similar) in 97 aa overlap (1-96:1-96)

                10        20        30        40        50         
pF1KB6 MNQTAIL-ICCLIFLTLSGIQGVPLSRTVRCTCISISNQPVNPRSLEKLEIIPASQFCPR
       :.....: .  .:.:.: :.::.:. :  ::.::: ..  .. .::. :. .  :  : .
NP_002 MKKSGVLFLLGIILLVLIGVQGTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEK
               10        20        30        40        50        60

      60        70        80        90                             
pF1KB6 VEIIATMKKKGEKRCLNPESKAIKNLLKAVSKERSKRSP                     
       .:::::.:. : . ::::.:  .:.:.:   :. :..                       
NP_002 IEIIATLKN-GVQTCLNPDSADVKELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRS
                70        80        90       100       110         

NP_002 RQKKTT
     120     

>>NP_005400 (OMIM: 604852) C-X-C motif chemokine 11 isof  (94 aa)
 initn: 196 init1: 182 opt: 194  Z-score: 265.5  bits: 53.9 E(85289): 4.7e-08
Smith-Waterman score: 194; 31.5% identity (64.1% similar) in 92 aa overlap (1-92:1-92)

               10        20        30        40        50        60
pF1KB6 MNQTAILICCLIFLTLSGIQGVPLSRTVRCTCISISNQPVNPRSLEKLEIIPASQFCPRV
       :.  .. :   ..:  . .:: :. .  :: ::. . . :.  ..::  :.  :. : ..
NP_005 MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKI
               10        20        30        40        50        60

               70        80        90        
pF1KB6 EIIATMKKKGEKRCLNPESKAIKNLLKAVSKERSKRSP
       :.: :.:..  .:::::.::  . ..: : ..      
NP_005 EVIITLKENKGQRCLNPKSKQARLIIKKVERKNF    
               70        80        90        

>>NP_001289052 (OMIM: 604852) C-X-C motif chemokine 11 i  (106 aa)
 initn: 189 init1: 175 opt: 190  Z-score: 259.6  bits: 53.0 E(85289): 1e-07
Smith-Waterman score: 190; 33.3% identity (63.4% similar) in 93 aa overlap (1-93:1-91)

               10        20        30        40        50        60
pF1KB6 MNQTAILICCLIFLTLSGIQGVPLSRTVRCTCISISNQPVNPRSLEKLEIIPASQFCPRV
       :.  .. :   ..:  . .:: :. .  :: ::. . . :.  ..::  :.  :. : ..
NP_001 MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKI
               10        20        30        40        50        60

               70        80        90                  
pF1KB6 EIIATMKKKGEKRCLNPESKAIKNLLKAVSKERSKRSP          
       :.: :.:..  .:::::.::  . ..:   :::               
NP_001 EVIITLKENKGQRCLNPKSKQARLIIKL--KERIFKNIKTYEVLEKSI
               70        80          90       100      

>>NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 precu  (114 aa)
 initn: 169 init1: 103 opt: 186  Z-score: 254.0  bits: 52.0 E(85289): 2.1e-07
Smith-Waterman score: 186; 31.2% identity (70.8% similar) in 96 aa overlap (7-97:21-114)

                             10          20           30        40 
pF1KB6               MNQTAILICCLIFLTLSG--IQGVPLSRTV---RCTCISISNQPVN
                           :.  :..::  :   .. :.: ..   ::::. .. . ::
NP_002 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLR-VN
               10        20        30        40        50          

              50        60        70        80        90        
pF1KB6 PRSLEKLEIIPASQFCPRVEIIATMKKKGEKRCLNPESKAIKNLLKAVSKERSKRSP
       :... ::...::.  : .::..:..:. :.. ::.::.  .:.... .    .:.. 
NP_002 PKTIGKLQVFPAGPQCSKVEVVASLKN-GKQVCLDPEAPFLKKVIQKILDSGNKKN 
      60        70        80         90       100       110     

>>XP_006714126 (OMIM: 605149) PREDICTED: C-X-C motif che  (109 aa)
 initn: 128 init1: 102 opt: 167  Z-score: 229.5  bits: 47.4 E(85289): 4.8e-06
Smith-Waterman score: 167; 29.8% identity (64.9% similar) in 94 aa overlap (7-98:8-100)

                10        20          30        40        50       
pF1KB6  MNQTAILICCLIFLTLSGIQGV--PLSRTVRCTCISISNQPVNPRSLEKLEIIPASQFC
              :.  :.  .:: .:::      ..:: :.. :.  .  : .....:.: .. :
XP_006 MKFISTSLLLMLLVSSLSPVQGVLEVYYTSLRCRCVQESSVFIPRRFIDRIQILPRGNGC
               10        20        30        40        50        60

        60        70        80        90                 
pF1KB6 PRVEIIATMKKKGEKRCLNPESKAIKNLLKAVSKERSKRSP         
       :: :::.  ::.    :..:... :. ..... :. :.  :         
XP_006 PRKEIIV-WKKNKSIVCVDPQAEWIQRMMEVLRKRSSSTLPVPVFKRKIP
                70        80        90       100         

>>NP_006410 (OMIM: 605149) C-X-C motif chemokine 13 prec  (109 aa)
 initn: 128 init1: 102 opt: 167  Z-score: 229.5  bits: 47.4 E(85289): 4.8e-06
Smith-Waterman score: 167; 29.8% identity (64.9% similar) in 94 aa overlap (7-98:8-100)

                10        20          30        40        50       
pF1KB6  MNQTAILICCLIFLTLSGIQGV--PLSRTVRCTCISISNQPVNPRSLEKLEIIPASQFC
              :.  :.  .:: .:::      ..:: :.. :.  .  : .....:.: .. :
NP_006 MKFISTSLLLMLLVSSLSPVQGVLEVYYTSLRCRCVQESSVFIPRRFIDRIQILPRGNGC
               10        20        30        40        50        60

        60        70        80        90                 
pF1KB6 PRVEIIATMKKKGEKRCLNPESKAIKNLLKAVSKERSKRSP         
       :: :::.  ::.    :..:... :. ..... :. :.  :         
NP_006 PRKEIIV-WKKNKSIVCVDPQAEWIQRMMEVLRKRSSSTLPVPVFKRKIP
                70        80        90       100         

>>NP_001502 (OMIM: 155730) growth-regulated alpha protei  (107 aa)
 initn:  87 init1:  52 opt: 161  Z-score: 221.9  bits: 46.0 E(85289): 1.3e-05
Smith-Waterman score: 161; 28.7% identity (71.3% similar) in 87 aa overlap (11-94:22-106)

                          10          20        30        40       
pF1KB6            MNQTAILICCLIFLTLSG--IQGVPLSRTVRCTCISISNQPVNPRSLEK
                            :..:. .:    :. ..  .:: :.. . : ..:.....
NP_001 MARAALSAAPSNPRLLRVALLLLLLVAAGRRAAGASVATELRCQCLQ-TLQGIHPKNIQS
               10        20        30        40         50         

        50        60        70        80         90        
pF1KB6 LEIIPASQFCPRVEIIATMKKKGEKRCLNPESKAIKNLL-KAVSKERSKRSP
       ...   .  : ..:.:::.:. :.: :::: :  .:... : .....:    
NP_001 VNVKSPGPHCAQTEVIATLKN-GRKACLNPASPIVKKIIEKMLNSDKSN   
      60        70        80         90       100          

>>NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 precu  (107 aa)
 initn: 100 init1:  55 opt: 160  Z-score: 220.6  bits: 45.7 E(85289): 1.5e-05
Smith-Waterman score: 160; 31.0% identity (71.8% similar) in 71 aa overlap (21-91:34-102)

                         10        20        30        40        50
pF1KB6           MNQTAILICCLIFLTLSGIQGVPLSRTVRCTCISISNQPVNPRSLEKLEI
                                     :.::.  .:: :.. . : .. ........
NP_002 ATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQ-TLQGIHLKNIQSVKV
            10        20        30        40         50        60  

               60        70        80        90        
pF1KB6 IPASQFCPRVEIIATMKKKGEKRCLNPESKAIKNLLKAVSKERSKRSP
          .  : ..:.:::.:. :.: :::: :  .:.... . :       
NP_002 KSPGPHCAQTEVIATLKN-GQKACLNPASPMVKKIIEKMLKNGKSN  
             70        80         90       100         

>>NP_002985 (OMIM: 600324) C-X-C motif chemokine 5 precu  (114 aa)
 initn:  71 init1:  49 opt: 159  Z-score: 218.9  bits: 45.5 E(85289): 1.9e-05
Smith-Waterman score: 159; 27.5% identity (64.8% similar) in 91 aa overlap (8-89:18-106)

                         10        20                 30        40 
pF1KB6           MNQTAILICCLIFLTLSGIQGVPLS---------RTVRCTCISISNQPVN
                        .: :. : :   :  :..         : .::.:.. ..: :.
NP_002 MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQ-TTQGVH
               10        20        30        40        50          

              50        60        70        80        90        
pF1KB6 PRSLEKLEIIPASQFCPRVEIIATMKKKGEKRCLNPESKAIKNLLKAVSKERSKRSP
       :. . .:...  .  : .::..:..:. :.. ::.::.  .:.... .         
NP_002 PKMISNLQVFAIGPQCSKVEVVASLKN-GKEICLDPEAPFLKKVIQKILDGGNKEN 
      60        70        80         90       100       110     




98 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 07:54:54 2016 done: Sat Nov  5 07:54:55 2016
 Total Scan time:  3.990 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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