Result of FASTA (ccds) for pF1KA1526
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1526, 907 aa
  1>>>pF1KA1526 907 - 907 aa - 907 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.1644+/-0.00116; mu= -5.2820+/- 0.069
 mean_var=336.0389+/-68.521, 0's: 0 Z-trim(113.2): 46  B-trim: 169 in 1/51
 Lambda= 0.069965
 statistics sampled from 13861 (13890) to 13861 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.728), E-opt: 0.2 (0.427), width:  16
 Scan time:  5.360

The best scores are:                                      opt bits E(32554)
CCDS6806.1 WHRN gene_id:25861|Hs108|chr9           ( 907) 5935 613.6 5.1e-175
CCDS43870.1 WHRN gene_id:25861|Hs108|chr9          ( 524) 3441 361.7   2e-99


>>CCDS6806.1 WHRN gene_id:25861|Hs108|chr9                (907 aa)
 initn: 5935 init1: 5935 opt: 5935  Z-score: 3255.7  bits: 613.6 E(32554): 5.1e-175
Smith-Waterman score: 5935; 100.0% identity (100.0% similar) in 907 aa overlap (1-907:1-907)

               10        20        30        40        50        60
pF1KA1 MNAPLDGLSVSSSSTGSLGSAAGAGGGGGAGLRLLSANVRQLHQALTALLSEAEREQFTH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MNAPLDGLSVSSSSTGSLGSAAGAGGGGGAGLRLLSANVRQLHQALTALLSEAEREQFTH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 CLNAYHARRNVFDLVRTLRVLLDSPVKRRLLPMLRLVIPRSDQLLFDQYTAEGLYLPATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 CLNAYHARRNVFDLVRTLRVLLDSPVKRRLLPMLRLVIPRSDQLLFDQYTAEGLYLPATT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 PYRQPAWGGPDSAGPGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 PYRQPAWGGPDSAGPGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 GLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLSVYSAGRIPGGYVTNHIYTWVDPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 GLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLSVYSAGRIPGGYVTNHIYTWVDPQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 GRSISPPSGLPQPHGGALRQQEGDRRSTLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 GRSISPPSGLPQPHGGALRQQEGDRRSTLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 GLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSRHLILTVKDVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 GLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSRHLILTVKDVG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 RLPHARTTVDETKWIASSRIRETMANSAGFLGDLTTEGINKPGFYKGPAGSQVTLSSLGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 RLPHARTTVDETKWIASSRIRETMANSAGFLGDLTTEGINKPGFYKGPAGSQVTLSSLGN
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 QTRVLLEEQARHLLNEQEHATMAYYLDEYRGGSVSVEALVMALFKLLNTHAKFSLLSEVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 QTRVLLEEQARHLLNEQEHATMAYYLDEYRGGSVSVEALVMALFKLLNTHAKFSLLSEVR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 GTISPQDLERFDHLVLRREIESMKARQPPGPGAGDTYSMVSYSDTGSSTGSHGTSTTVSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 GTISPQDLERFDHLVLRREIESMKARQPPGPGAGDTYSMVSYSDTGSSTGSHGTSTTVSS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 ARNTLDLEETGEAVQGNINALPDVSVDDVRSTSQGLSSFKPLPRPPPLAQGNDLPLGQPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 ARNTLDLEETGEAVQGNINALPDVSVDDVRSTSQGLSSFKPLPRPPPLAQGNDLPLGQPR
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 KLGREDLQPPSSMPSCSGTVFSAPQNRSPPAGTAPTPGTSSAQDLPSSPIYASVSPANPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 KLGREDLQPPSSMPSCSGTVFSAPQNRSPPAGTAPTPGTSSAQDLPSSPIYASVSPANPS
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA1 SKRPLDAHLALVNQHPIGPFPRVQSPPHLKSPSAEATVAGGCLLPPSPSGHPDQTGTNQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 SKRPLDAHLALVNQHPIGPFPRVQSPPHLKSPSAEATVAGGCLLPPSPSGHPDQTGTNQH
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA1 FVMVEVHRPDSEPDVNEVRALPQTRTASTLSQLSDSGQTLSEDSGVDAGEAEASAPGRGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 FVMVEVHRPDSEPDVNEVRALPQTRTASTLSQLSDSGQTLSEDSGVDAGEAEASAPGRGR
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA1 QSVSTKSRSSKELPRNERPTDGANKPPGLLEPTSTLVRVKKSAATLGIAIEGGANTRQPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 QSVSTKSRSSKELPRNERPTDGANKPPGLLEPTSTLVRVKKSAATLGIAIEGGANTRQPL
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA1 PRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 PRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLV
              850       860       870       880       890       900

              
pF1KA1 TEFNVML
       :::::::
CCDS68 TEFNVML
              

>>CCDS43870.1 WHRN gene_id:25861|Hs108|chr9               (524 aa)
 initn: 3441 init1: 3441 opt: 3441  Z-score: 1898.5  bits: 361.7 E(32554): 2e-99
Smith-Waterman score: 3441; 100.0% identity (100.0% similar) in 524 aa overlap (384-907:1-524)

           360       370       380       390       400       410   
pF1KA1 LTVKDVGRLPHARTTVDETKWIASSRIRETMANSAGFLGDLTTEGINKPGFYKGPAGSQV
                                     ::::::::::::::::::::::::::::::
CCDS43                               MANSAGFLGDLTTEGINKPGFYKGPAGSQV
                                             10        20        30

           420       430       440       450       460       470   
pF1KA1 TLSSLGNQTRVLLEEQARHLLNEQEHATMAYYLDEYRGGSVSVEALVMALFKLLNTHAKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TLSSLGNQTRVLLEEQARHLLNEQEHATMAYYLDEYRGGSVSVEALVMALFKLLNTHAKF
               40        50        60        70        80        90

           480       490       500       510       520       530   
pF1KA1 SLLSEVRGTISPQDLERFDHLVLRREIESMKARQPPGPGAGDTYSMVSYSDTGSSTGSHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SLLSEVRGTISPQDLERFDHLVLRREIESMKARQPPGPGAGDTYSMVSYSDTGSSTGSHG
              100       110       120       130       140       150

           540       550       560       570       580       590   
pF1KA1 TSTTVSSARNTLDLEETGEAVQGNINALPDVSVDDVRSTSQGLSSFKPLPRPPPLAQGND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TSTTVSSARNTLDLEETGEAVQGNINALPDVSVDDVRSTSQGLSSFKPLPRPPPLAQGND
              160       170       180       190       200       210

           600       610       620       630       640       650   
pF1KA1 LPLGQPRKLGREDLQPPSSMPSCSGTVFSAPQNRSPPAGTAPTPGTSSAQDLPSSPIYAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LPLGQPRKLGREDLQPPSSMPSCSGTVFSAPQNRSPPAGTAPTPGTSSAQDLPSSPIYAS
              220       230       240       250       260       270

           660       670       680       690       700       710   
pF1KA1 VSPANPSSKRPLDAHLALVNQHPIGPFPRVQSPPHLKSPSAEATVAGGCLLPPSPSGHPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VSPANPSSKRPLDAHLALVNQHPIGPFPRVQSPPHLKSPSAEATVAGGCLLPPSPSGHPD
              280       290       300       310       320       330

           720       730       740       750       760       770   
pF1KA1 QTGTNQHFVMVEVHRPDSEPDVNEVRALPQTRTASTLSQLSDSGQTLSEDSGVDAGEAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QTGTNQHFVMVEVHRPDSEPDVNEVRALPQTRTASTLSQLSDSGQTLSEDSGVDAGEAEA
              340       350       360       370       380       390

           780       790       800       810       820       830   
pF1KA1 SAPGRGRQSVSTKSRSSKELPRNERPTDGANKPPGLLEPTSTLVRVKKSAATLGIAIEGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SAPGRGRQSVSTKSRSSKELPRNERPTDGANKPPGLLEPTSTLVRVKKSAATLGIAIEGG
              400       410       420       430       440       450

           840       850       860       870       880       890   
pF1KA1 ANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDR
              460       470       480       490       500       510

           900       
pF1KA1 DYIDFLVTEFNVML
       ::::::::::::::
CCDS43 DYIDFLVTEFNVML
              520    




907 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:50:59 2016 done: Sat Nov  5 06:51:00 2016
 Total Scan time:  5.360 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]
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