Result of FASTA (ccds) for pF1KB3650
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3650, 478 aa
  1>>>pF1KB3650 478 - 478 aa - 478 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1982+/-0.000795; mu= 15.9799+/- 0.048
 mean_var=121.6050+/-23.868, 0's: 0 Z-trim(111.8): 32  B-trim: 50 in 2/50
 Lambda= 0.116305
 statistics sampled from 12639 (12670) to 12639 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.389), width:  16
 Scan time:  3.400

The best scores are:                                      opt bits E(32554)
CCDS11229.1 VTN gene_id:7448|Hs108|chr17           ( 478) 3399 581.2  8e-166
CCDS44287.1 PRG4 gene_id:10216|Hs108|chr1          (1311)  446 86.1 2.4e-16
CCDS81411.1 PRG4 gene_id:10216|Hs108|chr1          (1361)  446 86.2 2.5e-16
CCDS44288.1 PRG4 gene_id:10216|Hs108|chr1          (1363)  446 86.2 2.5e-16
CCDS1369.1 PRG4 gene_id:10216|Hs108|chr1           (1404)  446 86.2 2.5e-16


>>CCDS11229.1 VTN gene_id:7448|Hs108|chr17                (478 aa)
 initn: 3399 init1: 3399 opt: 3399  Z-score: 3090.5  bits: 581.2 E(32554): 8e-166
Smith-Waterman score: 3399; 100.0% identity (100.0% similar) in 478 aa overlap (1-478:1-478)

               10        20        30        40        50        60
pF1KB3 MAPLRPLLILALLAWVALADQESCKGRCTEGFNVDKKCQCDELCSYYQSCCTDYTAECKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAPLRPLLILALLAWVALADQESCKGRCTEGFNVDKKCQCDELCSYYQSCCTDYTAECKP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QVTRGDVFTMPEDEYTVYDDGEEKNNATVHEQVGGPSLTSDLQAQSKGNPEQTPVLKPEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QVTRGDVFTMPEDEYTVYDDGEEKNNATVHEQVGGPSLTSDLQAQSKGNPEQTPVLKPEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 EAPAPEVGASKPEGIDSRPETLHPGRPQPPAEEELCSGKPFDAFTDLKNGSLFAFRGQYC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EAPAPEVGASKPEGIDSRPETLHPGRPQPPAEEELCSGKPFDAFTDLKNGSLFAFRGQYC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 YELDEKAVRPGYPKLIRDVWGIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YELDEKAVRPGYPKLIRDVWGIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 RNISDGFDGIPDNVDAALALPAHSYSGRERVYFFKGKQYWEYQFQHQPSQEECEGSSLSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RNISDGFDGIPDNVDAALALPAHSYSGRERVYFFKGKQYWEYQFQHQPSQEECEGSSLSA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 VFEHFAMMQRDSWEDIFELLFWGRTSAGTRQPQFISRDWHGVPGQVDAAMAGRIYISGMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VFEHFAMMQRDSWEDIFELLFWGRTSAGTRQPQFISRDWHGVPGQVDAAMAGRIYISGMA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 PRPSLAKKQRFRHRNRKGYRSQRGHSRGRNQNSRRPSRATWLSLFSSEESNLGANNYDDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PRPSLAKKQRFRHRNRKGYRSQRGHSRGRNQNSRRPSRATWLSLFSSEESNLGANNYDDY
              370       380       390       400       410       420

              430       440       450       460       470        
pF1KB3 RMDWLVPATCEPIQSVFFFSGDKYYRVNLRTRRVDTVDPPYPRSIAQYWLGCPAPGHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RMDWLVPATCEPIQSVFFFSGDKYYRVNLRTRRVDTVDPPYPRSIAQYWLGCPAPGHL
              430       440       450       460       470        

>>CCDS44287.1 PRG4 gene_id:10216|Hs108|chr1               (1311 aa)
 initn: 579 init1: 293 opt: 446  Z-score: 407.0  bits: 86.1 E(32554): 2.4e-16
Smith-Waterman score: 446; 36.4% identity (61.9% similar) in 247 aa overlap (59-295:952-1190)

       30        40        50        60           70        80     
pF1KB3 TEGFNVDKKCQCDELCSYYQSCCTDYTAECKPQVT---RGDVFTMPEDEYTVYDDGEEKN
                                     ::..:   :  . :::: . :        .
CCDS44 KATTPKPQKPTKAPKKPTSTKKPKTMPRVRKPKTTPTPRKMTSTMPELNPTSRIAEAMLQ
             930       940       950       960       970       980 

          90       100        110        120       130       140   
pF1KB3 NATVHEQVGGPSLTS-DLQAQSKGNPE-QTPVLKPEEEAPAPEVGASKPEGIDSRPETLH
       ..:  .:. . .:.  . .... :. : .:: .  . ..  :::    :. .:  :.. .
CCDS44 TTTRPNQTPNSKLVEVNPKSEDAGGAEGETPHMLLRPHVFMPEV---TPD-MDYLPRVPN
             990      1000      1010      1020          1030       

              150       160       170       180       190          
pF1KB3 PG---RPQPPAEEELCSGKPFDAFTDLKNGSLFAFRGQYCYELDEKAVRPGYP-KLIRDV
        :    :.   : ..:.::: :..: :.::.: ::::.: . :.     :  : . : .:
CCDS44 QGIIINPMLSDETNICNGKPVDGLTTLRNGTLVAFRGHYFWMLS--PFSPPSPARRITEV
      1040      1050      1060      1070      1080        1090     

     200       210       220       230       240       250         
pF1KB3 WGIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYPRNISDGFDGIPDNVDAALA
       ::: .:::..::: ::.:::..:: :::::: . . :  ::. :  :: :.  .. :::.
CCDS44 WGIPSPIDTVFTRCNCEGKTFFFKDSQYWRFTNDIKDAGYPKPIFKGFGGLTGQIVAALS
        1100      1110      1120      1130      1140      1150     

     260       270        280       290       300       310        
pF1KB3 LPAHSYSGRERVYFFK-GKQYWEYQFQHQPSQEECEGSSLSAVFEHFAMMQRDSWEDIFE
         :.  .  : ::::: : .  .: ....: :. : :                       
CCDS44 T-AKYKNWPESVYFFKRGGSIQQYIYKQEPVQK-CPGRRPALNYPVYGETTQVRRRRFER
         1160      1170      1180       1190      1200      1210   

      320       330       340       350       360       370        
pF1KB3 LLFWGRTSAGTRQPQFISRDWHGVPGQVDAAMAGRIYISGMAPRPSLAKKQRFRHRNRKG
                                                                   
CCDS44 AIGPSQTHTIRIQYSPARLAYQDKGVLHNEVKVSILWRGLPNVVTSAISLPNIRKPDGYD
          1220      1230      1240      1250      1260      1270   

>>CCDS81411.1 PRG4 gene_id:10216|Hs108|chr1               (1361 aa)
 initn: 730 init1: 293 opt: 446  Z-score: 406.8  bits: 86.2 E(32554): 2.5e-16
Smith-Waterman score: 446; 36.4% identity (61.9% similar) in 247 aa overlap (59-295:1002-1240)

       30        40        50        60           70        80     
pF1KB3 TEGFNVDKKCQCDELCSYYQSCCTDYTAECKPQVT---RGDVFTMPEDEYTVYDDGEEKN
                                     ::..:   :  . :::: . :        .
CCDS81 KATTPKPQKPTKAPKKPTSTKKPKTMPRVRKPKTTPTPRKMTSTMPELNPTSRIAEAMLQ
             980       990      1000      1010      1020      1030 

          90       100        110        120       130       140   
pF1KB3 NATVHEQVGGPSLTS-DLQAQSKGNPE-QTPVLKPEEEAPAPEVGASKPEGIDSRPETLH
       ..:  .:. . .:.  . .... :. : .:: .  . ..  :::    :. .:  :.. .
CCDS81 TTTRPNQTPNSKLVEVNPKSEDAGGAEGETPHMLLRPHVFMPEV---TPD-MDYLPRVPN
            1040      1050      1060      1070          1080       

              150       160       170       180       190          
pF1KB3 PG---RPQPPAEEELCSGKPFDAFTDLKNGSLFAFRGQYCYELDEKAVRPGYP-KLIRDV
        :    :.   : ..:.::: :..: :.::.: ::::.: . :.     :  : . : .:
CCDS81 QGIIINPMLSDETNICNGKPVDGLTTLRNGTLVAFRGHYFWMLS--PFSPPSPARRITEV
      1090      1100      1110      1120      1130        1140     

     200       210       220       230       240       250         
pF1KB3 WGIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYPRNISDGFDGIPDNVDAALA
       ::: .:::..::: ::.:::..:: :::::: . . :  ::. :  :: :.  .. :::.
CCDS81 WGIPSPIDTVFTRCNCEGKTFFFKDSQYWRFTNDIKDAGYPKPIFKGFGGLTGQIVAALS
        1150      1160      1170      1180      1190      1200     

     260       270        280       290       300       310        
pF1KB3 LPAHSYSGRERVYFFK-GKQYWEYQFQHQPSQEECEGSSLSAVFEHFAMMQRDSWEDIFE
         :.  .  : ::::: : .  .: ....: :. : :                       
CCDS81 T-AKYKNWPESVYFFKRGGSIQQYIYKQEPVQK-CPGRRPALNYPVYGETTQVRRRRFER
         1210      1220      1230       1240      1250      1260   

      320       330       340       350       360       370        
pF1KB3 LLFWGRTSAGTRQPQFISRDWHGVPGQVDAAMAGRIYISGMAPRPSLAKKQRFRHRNRKG
                                                                   
CCDS81 AIGPSQTHTIRIQYSPARLAYQDKGVLHNEVKVSILWRGLPNVVTSAISLPNIRKPDGYD
          1270      1280      1290      1300      1310      1320   

>>CCDS44288.1 PRG4 gene_id:10216|Hs108|chr1               (1363 aa)
 initn: 654 init1: 293 opt: 446  Z-score: 406.7  bits: 86.2 E(32554): 2.5e-16
Smith-Waterman score: 446; 36.4% identity (61.9% similar) in 247 aa overlap (59-295:1004-1242)

       30        40        50        60           70        80     
pF1KB3 TEGFNVDKKCQCDELCSYYQSCCTDYTAECKPQVT---RGDVFTMPEDEYTVYDDGEEKN
                                     ::..:   :  . :::: . :        .
CCDS44 KATTPKPQKPTKAPKKPTSTKKPKTMPRVRKPKTTPTPRKMTSTMPELNPTSRIAEAMLQ
           980       990      1000      1010      1020      1030   

          90       100        110        120       130       140   
pF1KB3 NATVHEQVGGPSLTS-DLQAQSKGNPE-QTPVLKPEEEAPAPEVGASKPEGIDSRPETLH
       ..:  .:. . .:.  . .... :. : .:: .  . ..  :::    :. .:  :.. .
CCDS44 TTTRPNQTPNSKLVEVNPKSEDAGGAEGETPHMLLRPHVFMPEV---TPD-MDYLPRVPN
          1040      1050      1060      1070         1080          

              150       160       170       180       190          
pF1KB3 PG---RPQPPAEEELCSGKPFDAFTDLKNGSLFAFRGQYCYELDEKAVRPGYP-KLIRDV
        :    :.   : ..:.::: :..: :.::.: ::::.: . :.     :  : . : .:
CCDS44 QGIIINPMLSDETNICNGKPVDGLTTLRNGTLVAFRGHYFWMLS--PFSPPSPARRITEV
    1090      1100      1110      1120      1130        1140       

     200       210       220       230       240       250         
pF1KB3 WGIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYPRNISDGFDGIPDNVDAALA
       ::: .:::..::: ::.:::..:: :::::: . . :  ::. :  :: :.  .. :::.
CCDS44 WGIPSPIDTVFTRCNCEGKTFFFKDSQYWRFTNDIKDAGYPKPIFKGFGGLTGQIVAALS
      1150      1160      1170      1180      1190      1200       

     260       270        280       290       300       310        
pF1KB3 LPAHSYSGRERVYFFK-GKQYWEYQFQHQPSQEECEGSSLSAVFEHFAMMQRDSWEDIFE
         :.  .  : ::::: : .  .: ....: :. : :                       
CCDS44 T-AKYKNWPESVYFFKRGGSIQQYIYKQEPVQK-CPGRRPALNYPVYGETTQVRRRRFER
       1210      1220      1230       1240      1250      1260     

      320       330       340       350       360       370        
pF1KB3 LLFWGRTSAGTRQPQFISRDWHGVPGQVDAAMAGRIYISGMAPRPSLAKKQRFRHRNRKG
                                                                   
CCDS44 AIGPSQTHTIRIQYSPARLAYQDKGVLHNEVKVSILWRGLPNVVTSAISLPNIRKPDGYD
        1270      1280      1290      1300      1310      1320     

>>CCDS1369.1 PRG4 gene_id:10216|Hs108|chr1                (1404 aa)
 initn: 730 init1: 293 opt: 446  Z-score: 406.6  bits: 86.2 E(32554): 2.5e-16
Smith-Waterman score: 446; 36.4% identity (61.9% similar) in 247 aa overlap (59-295:1045-1283)

       30        40        50        60           70        80     
pF1KB3 TEGFNVDKKCQCDELCSYYQSCCTDYTAECKPQVT---RGDVFTMPEDEYTVYDDGEEKN
                                     ::..:   :  . :::: . :        .
CCDS13 KATTPKPQKPTKAPKKPTSTKKPKTMPRVRKPKTTPTPRKMTSTMPELNPTSRIAEAMLQ
         1020      1030      1040      1050      1060      1070    

          90       100        110        120       130       140   
pF1KB3 NATVHEQVGGPSLTS-DLQAQSKGNPE-QTPVLKPEEEAPAPEVGASKPEGIDSRPETLH
       ..:  .:. . .:.  . .... :. : .:: .  . ..  :::    :. .:  :.. .
CCDS13 TTTRPNQTPNSKLVEVNPKSEDAGGAEGETPHMLLRPHVFMPEV---TPD-MDYLPRVPN
         1080      1090      1100      1110         1120       1130

              150       160       170       180       190          
pF1KB3 PG---RPQPPAEEELCSGKPFDAFTDLKNGSLFAFRGQYCYELDEKAVRPGYP-KLIRDV
        :    :.   : ..:.::: :..: :.::.: ::::.: . :.     :  : . : .:
CCDS13 QGIIINPMLSDETNICNGKPVDGLTTLRNGTLVAFRGHYFWMLS--PFSPPSPARRITEV
             1140      1150      1160      1170        1180        

     200       210       220       230       240       250         
pF1KB3 WGIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYPRNISDGFDGIPDNVDAALA
       ::: .:::..::: ::.:::..:: :::::: . . :  ::. :  :: :.  .. :::.
CCDS13 WGIPSPIDTVFTRCNCEGKTFFFKDSQYWRFTNDIKDAGYPKPIFKGFGGLTGQIVAALS
     1190      1200      1210      1220      1230      1240        

     260       270        280       290       300       310        
pF1KB3 LPAHSYSGRERVYFFK-GKQYWEYQFQHQPSQEECEGSSLSAVFEHFAMMQRDSWEDIFE
         :.  .  : ::::: : .  .: ....: :. : :                       
CCDS13 T-AKYKNWPESVYFFKRGGSIQQYIYKQEPVQK-CPGRRPALNYPVYGETTQVRRRRFER
      1250      1260      1270      1280       1290      1300      

      320       330       340       350       360       370        
pF1KB3 LLFWGRTSAGTRQPQFISRDWHGVPGQVDAAMAGRIYISGMAPRPSLAKKQRFRHRNRKG
                                                                   
CCDS13 AIGPSQTHTIRIQYSPARLAYQDKGVLHNEVKVSILWRGLPNVVTSAISLPNIRKPDGYD
       1310      1320      1330      1340      1350      1360      




478 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:17:14 2016 done: Sat Nov  5 05:17:15 2016
 Total Scan time:  3.400 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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