FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3450, 293 aa
  1>>>pF1KB3450 293 - 293 aa - 293 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9897+/-0.000999; mu= 9.6552+/- 0.060
 mean_var=177.5302+/-35.321, 0's: 0 Z-trim(111.0): 44  B-trim: 0 in 0/50
 Lambda= 0.096258
 statistics sampled from 12040 (12069) to 12040 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.371), width:  16
 Scan time:  2.610

The best scores are:                                      opt bits E(32554)
CCDS10452.1 RPS2 gene_id:6187|Hs108|chr16          ( 293) 1970 285.4 3.5e-77


>>CCDS10452.1 RPS2 gene_id:6187|Hs108|chr16               (293 aa)
 initn: 1970 init1: 1970 opt: 1970  Z-score: 1499.2  bits: 285.4 E(32554): 3.5e-77
Smith-Waterman score: 1970; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)

               10        20        30        40        50        60
pF1KB3 MADDAGAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAEDKEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MADDAGAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAEDKEW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 MPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 RTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 PCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKAT
              190       200       210       220       230       240

              250       260       270       280       290   
pF1KB3 FDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAVATT
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAVATT
              250       260       270       280       290   




293 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:05:44 2016 done: Sat Nov  5 05:05:45 2016
 Total Scan time:  2.610 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]