Result of FASTA (ccds) for pF1KE0959
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0959, 499 aa
  1>>>pF1KE0959 499 - 499 aa - 499 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.0886+/-0.000916; mu= 2.9002+/- 0.055
 mean_var=315.3713+/-68.593, 0's: 0 Z-trim(116.2): 451  B-trim: 481 in 1/53
 Lambda= 0.072221
 statistics sampled from 16237 (16781) to 16237 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.812), E-opt: 0.2 (0.515), width:  16
 Scan time:  3.920

The best scores are:                                      opt bits E(32554)
CCDS10486.1 PKMYT1 gene_id:9088|Hs108|chr16        ( 499) 3504 378.6 8.6e-105
CCDS58414.1 PKMYT1 gene_id:9088|Hs108|chr16        ( 490) 3444 372.4 6.4e-103
CCDS45391.1 PKMYT1 gene_id:9088|Hs108|chr16        ( 480) 3107 337.2 2.4e-92
CCDS58415.1 PKMYT1 gene_id:9088|Hs108|chr16        ( 430) 2974 323.3 3.3e-88


>>CCDS10486.1 PKMYT1 gene_id:9088|Hs108|chr16             (499 aa)
 initn: 3504 init1: 3504 opt: 3504  Z-score: 1994.9  bits: 378.6 E(32554): 8.6e-105
Smith-Waterman score: 3504; 100.0% identity (100.0% similar) in 499 aa overlap (1-499:1-499)

               10        20        30        40        50        60
pF1KE0 MLERPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MLERPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 IPISRLFPPRTPGWHQLQPRRVSFRGEASETLQSPGYDPSRPESFFQQSFQRLSRLGHGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 IPISRLFPPRTPGWHQLQPRRVSFRGEASETLQSPGYDPSRPESFFQQSFQRLSRLGHGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 YGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 GILYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GILYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 LGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQGSYGTAADVFSLGLTILEVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQGSYGTAADVFSLGLTILEVA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 CNMELPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLALPVLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 CNMELPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLALPVLR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 QPRAWGVLWCMAAEALSRGWALWQALLALLCWLWHGLAHPASWLQPLGPPATPPGSPPCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QPRAWGVLWCMAAEALSRGWALWQALLALLCWLWHGLAHPASWLQPLGPPATPPGSPPCS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 LLLDSSLSSNWDDDSLGPSLSPEAVLARTVGSTSTPRSRCTPRDALDLSDINSEPPRGSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LLLDSSLSSNWDDDSLGPSLSPEAVLARTVGSTSTPRSRCTPRDALDLSDINSEPPRGSF
              430       440       450       460       470       480

              490         
pF1KE0 PSFEPRNLLSLFEDTLDPT
       :::::::::::::::::::
CCDS10 PSFEPRNLLSLFEDTLDPT
              490         

>>CCDS58414.1 PKMYT1 gene_id:9088|Hs108|chr16             (490 aa)
 initn: 3444 init1: 3444 opt: 3444  Z-score: 1961.2  bits: 372.4 E(32554): 6.4e-103
Smith-Waterman score: 3444; 100.0% identity (100.0% similar) in 490 aa overlap (10-499:1-490)

               10        20        30        40        50        60
pF1KE0 MLERPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGS
                :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58          MPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGS
                        10        20        30        40        50 

               70        80        90       100       110       120
pF1KE0 IPISRLFPPRTPGWHQLQPRRVSFRGEASETLQSPGYDPSRPESFFQQSFQRLSRLGHGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 IPISRLFPPRTPGWHQLQPRRVSFRGEASETLQSPGYDPSRPESFFQQSFQRLSRLGHGS
              60        70        80        90       100       110 

              130       140       150       160       170       180
pF1KE0 YGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 YGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEG
             120       130       140       150       160       170 

              190       200       210       220       230       240
pF1KE0 GILYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GILYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIF
             180       190       200       210       220       230 

              250       260       270       280       290       300
pF1KE0 LGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQGSYGTAADVFSLGLTILEVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQGSYGTAADVFSLGLTILEVA
             240       250       260       270       280       290 

              310       320       330       340       350       360
pF1KE0 CNMELPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLALPVLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 CNMELPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLALPVLR
             300       310       320       330       340       350 

              370       380       390       400       410       420
pF1KE0 QPRAWGVLWCMAAEALSRGWALWQALLALLCWLWHGLAHPASWLQPLGPPATPPGSPPCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 QPRAWGVLWCMAAEALSRGWALWQALLALLCWLWHGLAHPASWLQPLGPPATPPGSPPCS
             360       370       380       390       400       410 

              430       440       450       460       470       480
pF1KE0 LLLDSSLSSNWDDDSLGPSLSPEAVLARTVGSTSTPRSRCTPRDALDLSDINSEPPRGSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LLLDSSLSSNWDDDSLGPSLSPEAVLARTVGSTSTPRSRCTPRDALDLSDINSEPPRGSF
             420       430       440       450       460       470 

              490         
pF1KE0 PSFEPRNLLSLFEDTLDPT
       :::::::::::::::::::
CCDS58 PSFEPRNLLSLFEDTLDPT
             480       490

>>CCDS45391.1 PKMYT1 gene_id:9088|Hs108|chr16             (480 aa)
 initn: 3164 init1: 3107 opt: 3107  Z-score: 1771.5  bits: 337.2 E(32554): 2.4e-92
Smith-Waterman score: 3107; 99.3% identity (99.5% similar) in 442 aa overlap (1-442:1-442)

               10        20        30        40        50        60
pF1KE0 MLERPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MLERPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 IPISRLFPPRTPGWHQLQPRRVSFRGEASETLQSPGYDPSRPESFFQQSFQRLSRLGHGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IPISRLFPPRTPGWHQLQPRRVSFRGEASETLQSPGYDPSRPESFFQQSFQRLSRLGHGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 YGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 GILYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GILYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 LGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQGSYGTAADVFSLGLTILEVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQGSYGTAADVFSLGLTILEVA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 CNMELPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLALPVLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 CNMELPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLALPVLR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 QPRAWGVLWCMAAEALSRGWALWQALLALLCWLWHGLAHPASWLQPLGPPATPPGSPPCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QPRAWGVLWCMAAEALSRGWALWQALLALLCWLWHGLAHPASWLQPLGPPATPPGSPPCS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 LLLDSSLSSNWDDDSLGPSLSPEAVLARTVGSTSTPRSRCTPRDALDLSDINSEPPRGSF
       ::::::::::::::::::.  :                                      
CCDS45 LLLDSSLSSNWDDDSLGPGHPPCLACPPAGLHSPLRLSWPGLWGAPPPPGAGAHPGMPWT
              430       440       450       460       470       480

>>CCDS58415.1 PKMYT1 gene_id:9088|Hs108|chr16             (430 aa)
 initn: 2974 init1: 2974 opt: 2974  Z-score: 1697.2  bits: 323.3 E(32554): 3.3e-88
Smith-Waterman score: 2974; 100.0% identity (100.0% similar) in 426 aa overlap (74-499:5-430)

            50        60        70        80        90       100   
pF1KE0 PRGLSRSLPPPPPAKGSIPISRLFPPRTPGWHQLQPRRVSFRGEASETLQSPGYDPSRPE
                                     ::::::::::::::::::::::::::::::
CCDS58                           MLERWHQLQPRRVSFRGEASETLQSPGYDPSRPE
                                         10        20        30    

           110       120       130       140       150       160   
pF1KE0 SFFQQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SFFQQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEK
           40        50        60        70        80        90    

           170       180       190       200       210       220   
pF1KE0 VGQHPCCVRLEQAWEEGGILYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VGQHPCCVRLEQAWEEGGILYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAH
          100       110       120       130       140       150    

           230       240       250       260       270       280   
pF1KE0 LHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQGSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQGSY
          160       170       180       190       200       210    

           290       300       310       320       330       340   
pF1KE0 GTAADVFSLGLTILEVACNMELPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLVMMLEPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GTAADVFSLGLTILEVACNMELPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLVMMLEPD
          220       230       240       250       260       270    

           350       360       370       380       390       400   
pF1KE0 PKLRATAEALLALPVLRQPRAWGVLWCMAAEALSRGWALWQALLALLCWLWHGLAHPASW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 PKLRATAEALLALPVLRQPRAWGVLWCMAAEALSRGWALWQALLALLCWLWHGLAHPASW
          280       290       300       310       320       330    

           410       420       430       440       450       460   
pF1KE0 LQPLGPPATPPGSPPCSLLLDSSLSSNWDDDSLGPSLSPEAVLARTVGSTSTPRSRCTPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LQPLGPPATPPGSPPCSLLLDSSLSSNWDDDSLGPSLSPEAVLARTVGSTSTPRSRCTPR
          340       350       360       370       380       390    

           470       480       490         
pF1KE0 DALDLSDINSEPPRGSFPSFEPRNLLSLFEDTLDPT
       ::::::::::::::::::::::::::::::::::::
CCDS58 DALDLSDINSEPPRGSFPSFEPRNLLSLFEDTLDPT
          400       410       420       430




499 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:43:10 2016 done: Sat Nov  5 04:43:10 2016
 Total Scan time:  3.920 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com