Result of FASTA (ccds) for
pF1KE0916
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0916, 287 aa
1>>>pF1KE0916 287 - 287 aa - 287 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5239+/-0.000706; mu= 6.3070+/- 0.043
mean_var=141.3707+/-27.977, 0's: 0 Z-trim(114.9): 16 B-trim: 2 in 1/53
Lambda= 0.107868
statistics sampled from 15486 (15502) to 15486 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.804), E-opt: 0.2 (0.476), width: 16
Scan time: 2.420
The best scores are: opt bits E(32554)
CCDS13463.1 PMEPA1 gene_id:56937|Hs108|chr20 ( 287) 1989 320.2 1.1e-87
CCDS13462.1 PMEPA1 gene_id:56937|Hs108|chr20 ( 252) 1741 281.5 4.2e-76
CCDS13464.1 PMEPA1 gene_id:56937|Hs108|chr20 ( 237) 1667 270.0 1.2e-72
CCDS32795.1 LDLRAD4 gene_id:753|Hs108|chr18 ( 269) 1122 185.2 4.4e-47
CCDS32793.1 LDLRAD4 gene_id:753|Hs108|chr18 ( 306) 1121 185.1 5.5e-47
CCDS62392.1 LDLRAD4 gene_id:753|Hs108|chr18 ( 229) 1047 173.5 1.3e-43
CCDS62393.1 LDLRAD4 gene_id:753|Hs108|chr18 ( 208) 890 149.0 2.6e-36
CCDS42415.1 LDLRAD4 gene_id:753|Hs108|chr18 ( 251) 854 143.5 1.5e-34
CCDS32794.1 LDLRAD4 gene_id:753|Hs108|chr18 ( 288) 854 143.5 1.7e-34
>>CCDS13463.1 PMEPA1 gene_id:56937|Hs108|chr20 (287 aa)
initn: 1989 init1: 1989 opt: 1989 Z-score: 1687.5 bits: 320.2 E(32554): 1.1e-87
Smith-Waterman score: 1989; 100.0% identity (100.0% similar) in 287 aa overlap (1-287:1-287)
10 20 30 40 50 60
pF1KE0 MHRLMGVNSTAAAAAGQPNVSCTCNCKRSLFQSMEITELEFVQIIIIVVVMMVMVVVITC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MHRLMGVNSTAAAAAGQPNVSCTCNCKRSLFQSMEITELEFVQIIIIVVVMMVMVVVITC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVYAPPRPTDRLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVYAPPRPTDRLA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 VPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 ESVRAPPNRTIFDSDLMDSARLGGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ESVRAPPNRTIFDSDLMDSARLGGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHYP
190 200 210 220 230 240
250 260 270 280
pF1KE0 GSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL
250 260 270 280
>>CCDS13462.1 PMEPA1 gene_id:56937|Hs108|chr20 (252 aa)
initn: 1741 init1: 1741 opt: 1741 Z-score: 1479.8 bits: 281.5 E(32554): 4.2e-76
Smith-Waterman score: 1741; 99.2% identity (100.0% similar) in 252 aa overlap (36-287:1-252)
10 20 30 40 50 60
pF1KE0 GVNSTAAAAAGQPNVSCTCNCKRSLFQSMEITELEFVQIIIIVVVMMVMVVVITCLLSHY
..::::::::::::::::::::::::::::
CCDS13 MAELEFVQIIIIVVVMMVMVVVITCLLSHY
10 20 30
70 80 90 100 110 120
pF1KE0 KLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVYAPPRPTDRLAVPPFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVYAPPRPTDRLAVPPFA
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE0 QRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNRESVRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNRESVRA
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE0 PPNRTIFDSDLMDSARLGGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHYPGSSFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PPNRTIFDSDLMDSARLGGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHYPGSSFQ
160 170 180 190 200 210
250 260 270 280
pF1KE0 HQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL
::::::::::::::::::::::::::::::::::::::::::
CCDS13 HQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL
220 230 240 250
>>CCDS13464.1 PMEPA1 gene_id:56937|Hs108|chr20 (237 aa)
initn: 1667 init1: 1667 opt: 1667 Z-score: 1417.9 bits: 270.0 E(32554): 1.2e-72
Smith-Waterman score: 1667; 100.0% identity (100.0% similar) in 237 aa overlap (51-287:1-237)
30 40 50 60 70 80
pF1KE0 SCTCNCKRSLFQSMEITELEFVQIIIIVVVMMVMVVVITCLLSHYKLSARSFISRHSQGR
::::::::::::::::::::::::::::::
CCDS13 MMVMVVVITCLLSHYKLSARSFISRHSQGR
10 20 30
90 100 110 120 130 140
pF1KE0 RREDALSSEGCLWPSESTVSGNGIPEPQVYAPPRPTDRLAVPPFAQRERFHRFQPTYPYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RREDALSSEGCLWPSESTVSGNGIPEPQVYAPPRPTDRLAVPPFAQRERFHRFQPTYPYL
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE0 QHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNRESVRAPPNRTIFDSDLMDSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNRESVRAPPNRTIFDSDLMDSA
100 110 120 130 140 150
210 220 230 240 250 260
pF1KE0 RLGGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHYPGSSFQHQQSSGPPSLLEGTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RLGGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHYPGSSFQHQQSSGPPSLLEGTR
160 170 180 190 200 210
270 280
pF1KE0 LHHTHIAPLESAAIWSKEKDKQKGHPL
:::::::::::::::::::::::::::
CCDS13 LHHTHIAPLESAAIWSKEKDKQKGHPL
220 230
>>CCDS32795.1 LDLRAD4 gene_id:753|Hs108|chr18 (269 aa)
initn: 821 init1: 559 opt: 1122 Z-score: 958.7 bits: 185.2 E(32554): 4.4e-47
Smith-Waterman score: 1122; 65.6% identity (83.0% similar) in 259 aa overlap (28-285:17-267)
10 20 30 40 50 60
pF1KE0 MHRLMGVNSTAAAAAGQPNVSCTCNCKRSLFQSMEITELEFVQIIIIVVVMMVMVVVITC
..:: .. .::::.::::::::. ::::::.:
CCDS32 MSSDHLNNSTLKEAQFKDLF--LKKAELEFAQIIIIVVVVTVMVVVIVC
10 20 30 40
70 80 90 100 110 120
pF1KE0 LLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVYAPPRPTDRLA
::.:::.:.::::.: .:.:::::.: .:::::::.:.. : : .. :: ::..
CCDS32 LLNHYKVSTRSFINRPNQSRRREDGLPQEGCLWPSDSAAPRLGASE--IMHAPRSRDRFT
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE0 VPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNR
.: : ::.:: ::::::::.:::::::::::::::::::::::::::::::::::.::::
CCDS32 APSFIQRDRFSRFQPTYPYVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQMELNR
110 120 130 140 150 160
190 200 210 220 230
pF1KE0 ESVRAPPNRTIFDSDLMDSARL-GGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHY
::::::::::::::::.: : ::::::::::::::. .:.:::::::::::::.::.
CCDS32 ESVRAPPNRTIFDSDLIDIAMYSGGPCPPSSNSGISASTCSSNGRMEGPPPTYSEVMGHH
170 180 190 200 210 220
240 250 260 270 280
pF1KE0 PGSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL
::.:: :.: :. .:.::. . ::. . : ::.. :.
CCDS32 PGASFLHHQRSNAH---RGSRLQFQQNNA-ESTIVPIKGKDRKPGNLV
230 240 250 260
>>CCDS32793.1 LDLRAD4 gene_id:753|Hs108|chr18 (306 aa)
initn: 821 init1: 559 opt: 1121 Z-score: 957.1 bits: 185.1 E(32554): 5.5e-47
Smith-Waterman score: 1121; 67.2% identity (83.6% similar) in 250 aa overlap (37-285:61-304)
10 20 30 40 50 60
pF1KE0 VNSTAAAAAGQPNVSCTCNCKRSLFQSMEITELEFVQIIIIVVVMMVMVVVITCLLSHYK
.::::.::::::::. ::::::.:::.:::
CCDS32 VCNQQNDCGDNSDEENCLLVTEHPPPGIFNSELEFAQIIIIVVVVTVMVVVIVCLLNHYK
40 50 60 70 80 90
70 80 90 100 110 120
pF1KE0 LSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVYAPPRPTDRLAVPPFAQ
.:.::::.: .:.:::::.: .:::::::.:.. : : .. :: ::...: : :
CCDS32 VSTRSFINRPNQSRRREDGLPQEGCLWPSDSAAPRLGASE--IMHAPRSRDRFTAPSFIQ
100 110 120 130 140
130 140 150 160 170 180
pF1KE0 RERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNRESVRAP
:.:: ::::::::.:::::::::::::::::::::::::::::::::::.::::::::::
CCDS32 RDRFSRFQPTYPYVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQMELNRESVRAP
150 160 170 180 190 200
190 200 210 220 230 240
pF1KE0 PNRTIFDSDLMDSARL-GGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHYPGSSFQ
::::::::::.: : ::::::::::::::. .:.:::::::::::::.::.::.::
CCDS32 PNRTIFDSDLIDIAMYSGGPCPPSSNSGISASTCSSNGRMEGPPPTYSEVMGHHPGASFL
210 220 230 240 250 260
250 260 270 280
pF1KE0 HQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL
:.: :. .:.::. . ::. . : ::.. :.
CCDS32 HHQRSNAH---RGSRLQFQQ-NNAESTIVPIKGKDRKPGNLV
270 280 290 300
>>CCDS62392.1 LDLRAD4 gene_id:753|Hs108|chr18 (229 aa)
initn: 821 init1: 559 opt: 1047 Z-score: 896.7 bits: 173.5 E(32554): 1.3e-43
Smith-Waterman score: 1047; 66.5% identity (82.8% similar) in 233 aa overlap (54-285:1-227)
30 40 50 60 70 80
pF1KE0 CNCKRSLFQSMEITELEFVQIIIIVVVMMVMVVVITCLLSHYKLSARSFISRHSQGRRRE
:::::.:::.:::.:.::::.: .:.::::
CCDS62 MVVVIVCLLNHYKVSTRSFINRPNQSRRRE
10 20 30
90 100 110 120 130 140
pF1KE0 DALSSEGCLWPSESTVSGNGIPEPQVYAPPRPTDRLAVPPFAQRERFHRFQPTYPYLQHE
:.: .:::::::.:.. : : .. :: ::...: : ::.:: ::::::::.:::
CCDS62 DGLPQEGCLWPSDSAAPRLGASE--IMHAPRSRDRFTAPSFIQRDRFSRFQPTYPYVQHE
40 50 60 70 80
150 160 170 180 190 200
pF1KE0 IDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNRESVRAPPNRTIFDSDLMDSARL-
::::::::::::::::::::::::::::::::.::::::::::::::::::::.: :
CCDS62 IDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSDLIDIAMYS
90 100 110 120 130 140
210 220 230 240 250 260
pF1KE0 GGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHYPGSSFQHQQSSGPPSLLEGTRLH
::::::::::::::. .:.:::::::::::::.::.::.:: :.: :. .:.::.
CCDS62 GGPCPPSSNSGISASTCSSNGRMEGPPPTYSEVMGHHPGASFLHHQRSNAH---RGSRLQ
150 160 170 180 190 200
270 280
pF1KE0 HTHIAPLESAAIWSKEKDKQKGHPL
. ::. . : ::.. :.
CCDS62 FQQ-NNAESTIVPIKGKDRKPGNLV
210 220
>>CCDS62393.1 LDLRAD4 gene_id:753|Hs108|chr18 (208 aa)
initn: 821 init1: 559 opt: 890 Z-score: 765.2 bits: 149.0 E(32554): 2.6e-36
Smith-Waterman score: 890; 65.5% identity (81.0% similar) in 200 aa overlap (87-285:13-206)
60 70 80 90 100 110
pF1KE0 VITCLLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVYAPPRPT
..:::::::.:.. : : .. ::
CCDS62 MRLDSHLECISSTQEGCLWPSDSAAPRLGASE--IMHAPRSR
10 20 30 40
120 130 140 150 160 170
pF1KE0 DRLAVPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQL
::...: : ::.:: ::::::::.:::::::::::::::::::::::::::::::::::.
CCDS62 DRFTAPSFIQRDRFSRFQPTYPYVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQM
50 60 70 80 90 100
180 190 200 210 220 230
pF1KE0 ELNRESVRAPPNRTIFDSDLMDSARL-GGPCPPSSNSGISATCYGSGGRMEGPPPTYSEV
::::::::::::::::::::.: : ::::::::::::::. .:.:::::::::::::
CCDS62 ELNRESVRAPPNRTIFDSDLIDIAMYSGGPCPPSSNSGISASTCSSNGRMEGPPPTYSEV
110 120 130 140 150 160
240 250 260 270 280
pF1KE0 IGHYPGSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL
.::.::.:: :.: :. .:.::. . ::. . : ::.. :.
CCDS62 MGHHPGASFLHHQRSNAH---RGSRLQFQQ-NNAESTIVPIKGKDRKPGNLV
170 180 190 200
>>CCDS42415.1 LDLRAD4 gene_id:753|Hs108|chr18 (251 aa)
initn: 1093 init1: 574 opt: 854 Z-score: 733.8 bits: 143.5 E(32554): 1.5e-34
Smith-Waterman score: 1031; 62.5% identity (78.4% similar) in 259 aa overlap (28-285:17-249)
10 20 30 40 50 60
pF1KE0 MHRLMGVNSTAAAAAGQPNVSCTCNCKRSLFQSMEITELEFVQIIIIVVVMMVMVVVITC
..:: .. .::::.::::::::. ::::::.:
CCDS42 MSSDHLNNSTLKEAQFKDLF--LKKAELEFAQIIIIVVVVTVMVVVIVC
10 20 30 40
70 80 90 100 110 120
pF1KE0 LLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVYAPPRPTDRLA
::.:::.:.::::.: .:.:::::.: ::.. :: ::..
CCDS42 LLNHYKVSTRSFINRPNQSRRREDGL--------------------PQIMHAPRSRDRFT
50 60 70 80
130 140 150 160 170 180
pF1KE0 VPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNR
.: : ::.:: ::::::::.:::::::::::::::::::::::::::::::::::.::::
CCDS42 APSFIQRDRFSRFQPTYPYVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQMELNR
90 100 110 120 130 140
190 200 210 220 230
pF1KE0 ESVRAPPNRTIFDSDLMDSARL-GGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHY
::::::::::::::::.: : ::::::::::::::. .:.:::::::::::::.::.
CCDS42 ESVRAPPNRTIFDSDLIDIAMYSGGPCPPSSNSGISASTCSSNGRMEGPPPTYSEVMGHH
150 160 170 180 190 200
240 250 260 270 280
pF1KE0 PGSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL
::.:: :.: :. .:.::. . ::. . : ::.. :.
CCDS42 PGASFLHHQRSNAH---RGSRLQFQQNNA-ESTIVPIKGKDRKPGNLV
210 220 230 240 250
>>CCDS32794.1 LDLRAD4 gene_id:753|Hs108|chr18 (288 aa)
initn: 1094 init1: 574 opt: 854 Z-score: 732.9 bits: 143.5 E(32554): 1.7e-34
Smith-Waterman score: 1030; 64.0% identity (78.8% similar) in 250 aa overlap (37-285:61-286)
10 20 30 40 50 60
pF1KE0 VNSTAAAAAGQPNVSCTCNCKRSLFQSMEITELEFVQIIIIVVVMMVMVVVITCLLSHYK
.::::.::::::::. ::::::.:::.:::
CCDS32 VCNQQNDCGDNSDEENCLLVTEHPPPGIFNSELEFAQIIIIVVVVTVMVVVIVCLLNHYK
40 50 60 70 80 90
70 80 90 100 110 120
pF1KE0 LSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVYAPPRPTDRLAVPPFAQ
.:.::::.: .:.:::::.: ::.. :: ::...: : :
CCDS32 VSTRSFINRPNQSRRREDGL--------------------PQIMHAPRSRDRFTAPSFIQ
100 110 120 130
130 140 150 160 170 180
pF1KE0 RERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNRESVRAP
:.:: ::::::::.:::::::::::::::::::::::::::::::::::.::::::::::
CCDS32 RDRFSRFQPTYPYVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQMELNRESVRAP
140 150 160 170 180 190
190 200 210 220 230 240
pF1KE0 PNRTIFDSDLMDSARL-GGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHYPGSSFQ
::::::::::.: : ::::::::::::::. .:.:::::::::::::.::.::.::
CCDS32 PNRTIFDSDLIDIAMYSGGPCPPSSNSGISASTCSSNGRMEGPPPTYSEVMGHHPGASFL
200 210 220 230 240 250
250 260 270 280
pF1KE0 HQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL
:.: :. .:.::. . ::. . : ::.. :.
CCDS32 HHQRSNAH---RGSRLQFQQ-NNAESTIVPIKGKDRKPGNLV
260 270 280
287 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:29:35 2016 done: Sat Nov 5 04:29:35 2016
Total Scan time: 2.420 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]