GENSCAN 1.0	Date run:  5-Nov-116	Time: 04:26:48

Sequence gi568815581r:49324272_49524922 : 200651 bp : 49.03% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   1742   1865  124  1  1   70   92    74 0.746   6.33
 1.02 Term +  28361  28488  128  0  2   86   39    71 0.233   0.44
 1.03 PlyA +  28525  28530    6                               1.05

 2.03 PlyA -  29806  29801    6                               1.05
 2.02 Term -  37072  37063   10  0  1  100   49     6 0.374  -4.43
 2.01 Init -  37690  37638   53  1  2   84  100   119 0.774  11.33
 2.00 Prom -  66023  65984   40                              -1.96

 3.03 PlyA -  66464  66459    6                               1.05
 3.02 Term -  70931  70846   86  0  2   74   49    63 0.304  -1.18
 3.01 Init -  76499  76208  292  2  1   49   91   141 0.409   7.81
 3.00 Prom -  78820  78781   40                              -7.66

 4.07 PlyA -  79809  79804    6                               1.05
 4.06 Term -  80933  80721  213  2  0   93   55   434 0.916  37.83
 4.05 Intr -  82583  82488   96  2  0   99  105    95 0.999  12.51
 4.04 Intr -  84887  84771  117  2  0   88   91   120 0.998  12.96
 4.03 Intr -  85202  85060  143  0  2   55   89   288 0.997  25.67
 4.02 Intr -  87568  87407  162  2  0   85  113   116 0.991  13.75
 4.01 Init -  95186  94997  190  2  1   59    4   207 0.007   6.84
 4.00 Prom -  99745  99706   40                              -6.06

 5.00 Prom + 104379 104418   40                              -6.06
 5.01 Init + 114769 114912  144  0  0   84   49   130 0.711   8.82
 5.02 Intr + 121360 121446   87  0  0   51  105    76 0.626   5.77
 5.03 Term + 121886 121927   42  1  0  107   43    61 0.848   0.66
 5.04 PlyA + 122699 122704    6                               1.05

 6.05 PlyA - 128239 128234    6                               1.05
 6.04 Term - 129894 129715  180  0  0   86   50    51 0.133  -1.29
 6.03 Intr - 134808 134777   32  1  2  131   89    24 0.394   4.65
 6.02 Intr - 148312 148168  145  1  1  122   20    40 0.042   0.46
 6.01 Init - 155311 155249   63  1  0  102   99    57 0.586   7.38
 6.00 Prom - 160823 160784   40                              -1.36

 7.02 PlyA - 163809 163804    6                              -0.45
 7.01 Sngl - 167874 167680  195  0  0   95   47   224 0.861  14.16
 7.00 Prom - 168902 168863   40                              -7.36

 8.00 Prom + 169006 169045   40                              -5.66
 8.01 Init + 171174 171212   39  2  0  101   84   152 0.237  14.29
 8.02 Intr + 177792 177933  142  2  1  120   79    46 0.908   6.83
 8.03 Intr + 182028 182387  360  1  0   45   96   836 0.990  75.29
 8.04 Intr + 186141 186393  253  1  1   77   94   293 0.983  25.29
 8.05 Intr + 187621 187781  161  1  2  101   84   262 0.999  26.73
 8.06 Term + 188437 188738  302  2  2  110   52   421 0.648  36.08
 8.07 PlyA + 193793 193798    6                               1.05

 9.04 PlyA - 194861 194856    6                               1.05
 9.03 Term - 195609 195465  145  2  1   98   45    26 0.777  -3.32
 9.02 Intr - 196613 196496  118  0  1   70   96    89 0.462   7.42
 9.01 Intr - 197445 197367   79  0  1  105   43    46 0.331   0.92

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +   3250   3323   74  2  2   50   43    94 0.821  -0.83
S.002 Init -  88993  88906   88  1  1  104   77    50 0.983   6.34
S.003 Sngl -  95186  94974  213  2  0   59   44   214 0.969   7.55
S.004 Sngl - 100651  99998  654  1  0   78   48   161 0.843   7.28


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581r:49324272_49524922|GENSCAN_predicted_peptide_1|83_aa
MGAFRKSIYGSIAETSVLKIKSRKKYGTNKAELCSKHKYGPGIYPQEMKLIFTPKPAMNI
YSGSVHNHPKLEAKCPSNGYECT

>gi568815581r:49324272_49524922|GENSCAN_predicted_CDS_1|252_bp
atgggggcttttcggaaaagcatatatggcagtatagcagaaacatctgtactcaaaatt
aagtcaaggaagaagtatgggaccaataaagcagagctatgtagcaaacataagtatggg
ccaggtatttacccacaagaaatgaaacttatattcaccccaaaacctgccatgaacatt
tacagtggctctgttcataatcacccgaaactggaagccaaatgtccctcaaatggttac
gaatgtacgtga

>gi568815581r:49324272_49524922|GENSCAN_predicted_peptide_2|20_aa
MDRRGGGRGGGGGGGRPGLC

>gi568815581r:49324272_49524922|GENSCAN_predicted_CDS_2|63_bp
atggaccgccgaggcggcggccggggcggcggaggcggaggcggccggcccgggctctgc
tga

>gi568815581r:49324272_49524922|GENSCAN_predicted_peptide_3|125_aa
MGAVQKGIPHKHFHGKTQKSLQCYQQAVGIVGNKGKNLVKRMNVLIEHIKHSESWNRFLK
HIKINDQKKKDAKEKSMWVQLKRQPAPPREAHIVKTNDGSNLPVTSRASLCQPAQDVQKN
IPGKD

>gi568815581r:49324272_49524922|GENSCAN_predicted_CDS_3|378_bp
atgggtgctgttcaaaaaggaattccccacaaacatttccatggcaaaactcaaaagagt
ctacagtgttaccagcaagctgttggcattgttggaaacaagggcaagaatcttgtcaag
agaatgaatgtacttattgagcacattaagcactctgagagctggaatcgcttcctgaaa
catatcaaaataaatgatcagaaaaagaaagacgccaaagagaaaagtatgtgggttcaa
ctgaagcgccagcctgctccacccagagaagcacacattgtgaaaaccaatgatggcagc
aacctgcctgttactagccgtgccagcctgtgtcaaccagcacaagatgttcagaaaaat
atcccggggaaagactag

>gi568815581r:49324272_49524922|GENSCAN_predicted_peptide_4|306_aa
MRSASARLPCLGSEKRLCLAAVQSSKCEVTAFLQVYPTAPNRQRPSRTGHDDDGSFVKKK
RGKLDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQ
NVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELV
SRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQ
KKAAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLPAGQSV
LLQLPQ

>gi568815581r:49324272_49524922|GENSCAN_predicted_CDS_4|921_bp
atgaggagcgcctctgcccggctgccctgtctgggaagtgagaagcgcctctgcctggcc
gctgtgcaatcttccaagtgtgaagtgacagcctttctgcaggtgtacccaacagctccg
aatagacagcgaccatcgagaacgggccatgatgacgatggcagttttgtcaaaaagaaa
agggggaaattggatgctgggcacagagctgtcatctttgaccgattccgtggagtgcag
gacattgtggtaggggaagggactcattttctcatcccgtgggtacagaaaccaattatc
tttgactgccgttctcgaccacgtaatgtgccagtcatcactggtagcaaagatttacag
aatgtcaacatcacactgcgcatcctcttccggcctgtcgccagccagcttcctcgcatc
ttcaccagcatcggagaggactatgatgagcgtgtgctgccgtccatcacaactgagatc
ctcaagtcagtggtggctcgctttgatgctggagaactaatcacccagagagagctggtc
tccaggcaggtgagcgacgaccttacagagcgagccgccacctttgggctcatcctggat
gacgtgtccttgacacatctgaccttcgggaaggagttcacagaagcggtggaagccaaa
caggtggctcagcaggaagcagagagggccagatttgtggtggaaaaggctgagcaacag
aaaaaggcggccatcatctctgctgagggcgactccaaggcagctgagctgattgccaac
tcactggccactgcaggggatggcctgatcgagctgcgcaagctggaagctgcagaggac
atcgcgtaccagctctcacgctctcggaacatcacctacctgccagcggggcagtccgtg
ctcctccagctgccccagtga

>gi568815581r:49324272_49524922|GENSCAN_predicted_peptide_5|90_aa
MAILGPESNQIRCSPQSPQQLRRTAVRLRALSGWNGTSCPPLISGCPRYPRPDNGGFRGA
WMAGHSPLCEAELTAKLEVFVDLSGRSMAD

>gi568815581r:49324272_49524922|GENSCAN_predicted_CDS_5|273_bp
atggctattttggggcctgaatcaaatcaaatccgctgcagcccccagagcccccagcag
ctgcgcagaacagctgtccggctgagggcgctgagcggctggaatggcacttcctgcccc
ccactgatctctggctgcccaaggtacccccggcccgacaatgggggcttcagaggagcc
tggatggcaggacacagccccctctgtgaagcggagttgaccgccaagctggaggtcttc
gtggatttatcagggagaagcatggctgactaa

>gi568815581r:49324272_49524922|GENSCAN_predicted_peptide_6|139_aa
MGWGLLRAVEAGSHGLTAGPQGQRLGMEMWAAARLLDAAGSSSLPASEPKSHLSSYKATE
TLSKEGPPSGRPLKSSPPPQSQGDTKAESRQPPLILCPQTPEHYPIPHCPHEGIFQGHRK
EHLKGRRLVRQALVEVKKV

>gi568815581r:49324272_49524922|GENSCAN_predicted_CDS_6|420_bp
atgggctggggcctcctcagagccgtggaggcagggagtcacggactgacagccgggcct
caggggcagaggttgggcatggagatgtgggcagctgctagactcctggatgctgcaggg
tcctcctccctgccagcttcagagcccaaaagccacctgtcctcttacaaagccacagag
accctgagcaaagaggggccaccttctggaaggcccctcaagtcatctccacccccacag
agccaaggagacaccaaggctgagtccaggcagcctcccctgatcctctgtccccaaacc
cctgagcactaccccatccctcactgtccccatgaagggattttccagggccacaggaag
gaacacttgaagggaaggagactggtgcggcaggcactggtggaggtgaagaaagtatga

>gi568815581r:49324272_49524922|GENSCAN_predicted_peptide_7|64_aa
MTRSIYTKTSTTMTIIIMTTTSTITIITTTATITTTSNNTSTIMTIIIMPLPSVSLPESQ
LSPP

>gi568815581r:49324272_49524922|GENSCAN_predicted_CDS_7|195_bp
atgaccagaagcatctataccaaaactagtaccactatgaccatcatcattatgaccacc
accagtaccatcaccatcatcaccaccactgccaccatcaccaccacttctaacaacacc
agcaccattatgaccatcatcattatgccactgccatcagtgtcactaccagaatcacaa
ctatcaccaccatga

>gi568815581r:49324272_49524922|GENSCAN_predicted_peptide_8|418_aa
MDGPRLLLLLLLGVSLGGAKEACPTGLYTHSGECCKACNLGEGVAQPCGANQTVCEPCLD
SVTFSDVVSATEPCKPCTECVGLQSMSAPCVEADDAVCRCAYGYYQDETTGRCEACRVCE
AGSGLVFSCQDKQNTVCEECPDGTYSDEANHVDPCLPCTVCEDTERQLRECTRWADAECE
EIPGRWITRSTPPEGSDSTAPSTQEPEAPPEQDLIASTVAGVVTTVMGSSQPVVTRGTTD
NLIPVYCSILAAVVVGLVAYIAFKRWNSCKQNKQGANSRPVNQTPPPEGEKLHSDSGISV
DSQSLHDQQPHTQTASGQALKGDGGLYSSLPPAKREEVEKLLNGSAGDTWRHLAGELGYQ
PEHIDSFTHEACPVRALLASWATQDSATLDALLAALRRIQRADLVESLCSESTATSPV

>gi568815581r:49324272_49524922|GENSCAN_predicted_CDS_8|1257_bp
atggacgggccgcgcctgctgctgttgctgcttctgggggtgtcccttggaggtgccaag
gaggcatgccccacaggcctgtacacacacagcggtgagtgctgcaaagcctgcaacctg
ggcgagggtgtggcccagccttgtggagccaaccagaccgtgtgtgagccctgcctggac
agcgtgacgttctccgacgtggtgagcgcgaccgagccgtgcaagccgtgcaccgagtgc
gtggggctccagagcatgtcggcgccgtgcgtggaggccgacgacgccgtgtgccgctgc
gcctacggctactaccaggatgagacgactgggcgctgcgaggcgtgccgcgtgtgcgag
gcgggctcgggcctcgtgttctcctgccaggacaagcagaacaccgtgtgcgaggagtgc
cccgacggcacgtattccgacgaggccaaccacgtggacccgtgcctgccctgcaccgtg
tgcgaggacaccgagcgccagctccgcgagtgcacacgctgggccgacgccgagtgcgag
gagatccctggccgttggattacacggtccacacccccagagggctcggacagcacagcc
cccagcacccaggagcctgaggcacctccagaacaagacctcatagccagcacggtggca
ggtgtggtgaccacagtgatgggcagctcccagcccgtggtgacccgaggcaccaccgac
aacctcatccctgtctattgctccatcctggctgctgtggttgtgggccttgtggcctac
atagccttcaagaggtggaacagctgcaagcagaacaagcaaggagccaacagccggcca
gtgaaccagacgcccccaccagagggagaaaaactccacagcgacagtggcatctccgtg
gacagccagagcctgcatgaccagcagccccacacgcagacagcctcgggccaggccctc
aagggtgacggaggcctctacagcagcctgcccccagccaagcgggaggaggtggagaag
cttctcaacggctctgcgggggacacctggcggcacctggcgggcgagctgggctaccag
cccgagcacatagactcctttacccatgaggcctgccccgttcgcgccctgcttgcaagc
tgggccacccaggacagcgccacactggacgccctcctggccgccctgcgccgcatccag
cgagccgacctcgtggagagtctgtgcagtgagtccactgccacatccccggtgtga

>gi568815581r:49324272_49524922|GENSCAN_predicted_peptide_9|113_aa
AGFKRLPCRILPGSLQPENFLPLRNPNCGHPKVRRVEGEPSGLLLKALGPGVELGLQNVD
SKGFSGAQGYRLSGPPRPSPLDEEAFHIVPSLIAASLPWMKEQREALGEEMGP

>gi568815581r:49324272_49524922|GENSCAN_predicted_CDS_9|342_bp
gctggattcaaacggctcccctgcagaattcttcctgggtccctgcagccagaaaacttc
ctccctcttcggaaccccaactgcgggcatcccaaggtccgcagggtagaaggtgaacca
tctggactactgttgaaagccttaggccctggggtggagctggggcttcagaatgtggac
tccaagggcttctcaggagcacagggttacaggctcagcggacccccacgcccctccccg
ctggatgaagaggcatttcacattgttccaagtctcatcgctgcttcactgccctggatg
aaagagcagagggaggcactaggggaagagatgggaccctga