Result of FASTA (ccds) for pF1KB6872
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6872, 198 aa
  1>>>pF1KB6872 198 - 198 aa - 198 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7430+/-0.00109; mu= 16.3655+/- 0.067
 mean_var=74.5510+/-15.977, 0's: 0 Z-trim(104.5): 129  B-trim: 557 in 2/48
 Lambda= 0.148541
 statistics sampled from 7760 (7924) to 7760 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.621), E-opt: 0.2 (0.243), width:  16
 Scan time:  1.590

The best scores are:                                      opt bits E(32554)
CCDS7298.1 SAR1A gene_id:56681|Hs108|chr10         ( 198) 1306 289.1 1.2e-78
CCDS4177.1 SAR1B gene_id:51128|Hs108|chr5          ( 198) 1215 269.6 8.7e-73
CCDS9695.1 ARF6 gene_id:382|Hs108|chr14            ( 175)  316 76.9 7.9e-15
CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5          ( 569)  308 75.7   6e-14
CCDS9419.1 ARL11 gene_id:115761|Hs108|chr13        ( 196)  302 74.0 6.9e-14
CCDS8088.1 ARL2 gene_id:402|Hs108|chr11            ( 184)  298 73.1 1.2e-13
CCDS2928.1 ARL6 gene_id:84100|Hs108|chr3           ( 186)  297 72.9 1.4e-13
CCDS3986.1 TRIM23 gene_id:373|Hs108|chr5           ( 546)  302 74.4 1.4e-13
CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3          ( 192)  297 72.9 1.4e-13
CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5           ( 574)  302 74.4 1.5e-13
CCDS1565.1 ARF1 gene_id:375|Hs108|chr1             ( 181)  295 72.4 1.8e-13
CCDS8774.1 ARF3 gene_id:377|Hs108|chr12            ( 181)  294 72.2 2.1e-13
CCDS11463.1 ARL4D gene_id:379|Hs108|chr17          ( 201)  291 71.6 3.6e-13
CCDS34745.1 ARF5 gene_id:381|Hs108|chr7            ( 180)  282 69.6 1.3e-12
CCDS7538.1 ARL3 gene_id:403|Hs108|chr10            ( 182)  281 69.4 1.5e-12
CCDS5359.1 ARL4A gene_id:10124|Hs108|chr7          ( 200)  276 68.4 3.3e-12
CCDS2566.1 ARL8B gene_id:55207|Hs108|chr3          ( 186)  269 66.9 8.9e-12
CCDS2884.1 ARF4 gene_id:378|Hs108|chr3             ( 180)  268 66.6   1e-11
CCDS1421.1 ARL8A gene_id:127829|Hs108|chr1         ( 186)  267 66.4 1.2e-11
CCDS44958.1 ARL1 gene_id:400|Hs108|chr12           ( 181)  266 66.2 1.4e-11
CCDS2925.1 ARL13B gene_id:200894|Hs108|chr3        ( 428)  262 65.7 4.5e-11
CCDS2512.1 ARL4C gene_id:10123|Hs108|chr2          ( 192)  256 64.1 6.3e-11
CCDS63169.1 ARL4C gene_id:10123|Hs108|chr2         ( 201)  256 64.1 6.5e-11


>>CCDS7298.1 SAR1A gene_id:56681|Hs108|chr10              (198 aa)
 initn: 1306 init1: 1306 opt: 1306  Z-score: 1525.6  bits: 289.1 E(32554): 1.2e-78
Smith-Waterman score: 1306; 100.0% identity (100.0% similar) in 198 aa overlap (1-198:1-198)

               10        20        30        40        50        60
pF1KB6 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 SEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 DETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 DETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSV
              130       140       150       160       170       180

              190        
pF1KB6 LKRQGYGEGFRWLSQYID
       ::::::::::::::::::
CCDS72 LKRQGYGEGFRWLSQYID
              190        

>>CCDS4177.1 SAR1B gene_id:51128|Hs108|chr5               (198 aa)
 initn: 1215 init1: 1215 opt: 1215  Z-score: 1420.2  bits: 269.6 E(32554): 8.7e-73
Smith-Waterman score: 1215; 89.9% identity (98.0% similar) in 198 aa overlap (1-198:1-198)

               10        20        30        40        50        60
pF1KB6 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
       :::::.:::.::::::::::::::.:::::::::::::::::::::::::::::::::::
CCDS41 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMT
       ::::::::::::::::::: ::::::::::::::::::::::::: ::.::: ::..:::
CCDS41 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 DETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSV
       ::::.::::::::::::: .:::::.:::.:::::::::::...::::::::.:::::::
CCDS41 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSV
              130       140       150       160       170       180

              190        
pF1KB6 LKRQGYGEGFRWLSQYID
       ::::::::::::..::::
CCDS41 LKRQGYGEGFRWMAQYID
              190        

>>CCDS9695.1 ARF6 gene_id:382|Hs108|chr14                 (175 aa)
 initn: 336 init1: 314 opt: 316  Z-score: 379.7  bits: 76.9 E(32554): 7.9e-15
Smith-Waterman score: 317; 33.3% identity (67.2% similar) in 174 aa overlap (24-194:12-170)

               10        20        30        40        50          
pF1KB6 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHV---PTL
                              :  ....:::: :::::.:. ::   ::: :   ::.
CCDS96             MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLK---LGQSVTTIPTV
                           10        20        30           40     

        60        70        80        90       100       110       
pF1KB6 HPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNA
         . : .:  .. :...:.::... : .:..:  . .:..:.:::::..:. :.. ::. 
CCDS96 GFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR
          50        60        70        80        90       100     

       120       130       140       150       160       170       
pF1KB6 LMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFM
       ...:. . .. :::..:: :  ::.. ....: .::         .  ..  ..:     
CCDS96 IINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT-------RIRDRNWYVQPS----
         110       120       130       140              150        

       180       190         
pF1KB6 CSVLKRQGYGEGFRWLSQYID 
       :.. . .:  ::. ::.     
CCDS96 CAT-SGDGLYEGLTWLTSNYKS
           160       170     

>>CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5               (569 aa)
 initn: 290 init1: 290 opt: 308  Z-score: 363.9  bits: 75.7 E(32554): 6e-14
Smith-Waterman score: 308; 33.6% identity (69.7% similar) in 152 aa overlap (27-178:406-556)

                   10        20        30        40        50      
pF1KB6     MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPT
                                     ..: ::::.:::::.:  ::.:.. : .::
CCDS43 EVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPT
         380       390       400       410       420       430     

         60        70        80        90       100       110      
pF1KB6 LHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELN
       .  . : .   .. :: .:.::... : .::.:    ...::.:: . ..:. :.. :: 
CCDS43 IGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELA
         440       450       460       470       480       490     

        120       130       140       150       160       170      
pF1KB6 ALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVF
        :.:.. . .. .::..:: : . :.: :.. :...:.    :. .  ..  .:: .  .
CCDS43 KLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGR-SWYIQGCDARSVFQI
         500       510       520       530        540       550    

        180       190        
pF1KB6 MCSVLKRQGYGEGFRWLSQYID
       .:                    
CCDS43 ICDQYTGKEVVTEKG       
          560                

>>CCDS9419.1 ARL11 gene_id:115761|Hs108|chr13             (196 aa)
 initn: 248 init1: 173 opt: 302  Z-score: 362.8  bits: 74.0 E(32554): 6.9e-14
Smith-Waterman score: 304; 32.9% identity (66.5% similar) in 173 aa overlap (22-193:9-169)

               10        20        30        40        50        60
pF1KB6 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
                            .:  ...:..:::.:::::::. ::  .: . .::.  .
CCDS94              MGSVNSRGHKAEAQVVMMGLDSAGKTTLLYKLKGHQLVETLPTVGFN
                            10        20        30        40       

                70        80        90       100       110         
pF1KB6 SEELTIAG-MTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALM
        : :   : ...: .:.::.   :  ::.:: . . .:...: .:..:: :: .::. ..
CCDS94 VEPLKAPGHVSLTLWDVGGQAPLRASWKDYLEGTDILVYVLDSTDEARLPESAAELTEVL
        50        60        70        80        90       100       

     120       130       140       150       160       170         
pF1KB6 TDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCS
       .: ....::.:.:.:: .  ::.   :.:.             ..:.... .  :.  ::
CCDS94 NDPNMAGVPFLVLANKQEAPDALPLLKIRN------------RLSLERFQDHCWELRGCS
       110       120       130                   140       150     

     180       190                              
pF1KB6 VLKRQGYGEGFRWLSQYID                      
       .:  .:  :... :                           
CCDS94 ALTGEGLPEALQSLWSLLKSRSCMCLQARAHGAERGDSKRS
         160       170       180       190      

>>CCDS8088.1 ARL2 gene_id:402|Hs108|chr11                 (184 aa)
 initn: 301 init1: 278 opt: 298  Z-score: 358.6  bits: 73.1 E(32554): 1.2e-13
Smith-Waterman score: 298; 32.2% identity (71.3% similar) in 143 aa overlap (11-153:2-144)

               10        20        30        40        50        60
pF1KB6 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
                 :. ..:. .   ..  .:..::::::::::.:. .. . .    :::  .
CCDS80          MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFN
                        10        20        30        40        50 

               70        80        90       100       110       120
pF1KB6 SEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMT
        . :   :. .. .:.::... :  :.::. . .:....:: ::..:. . . ::..:..
CCDS80 IKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLV
              60        70        80        90       100       110 

              130       140       150       160       170       180
pF1KB6 DETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSV
       .: .... .::..:: :   :.: . .::.. :                           
CCDS80 EERLAGATLLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDW
             120       130       140       150       160       170 

              190        
pF1KB6 LKRQGYGEGFRWLSQYID
                         
CCDS80 LLDDISSRIFTAD     
             180         

>>CCDS2928.1 ARL6 gene_id:84100|Hs108|chr3                (186 aa)
 initn: 320 init1: 163 opt: 297  Z-score: 357.3  bits: 72.9 E(32554): 1.4e-13
Smith-Waterman score: 325; 31.0% identity (67.9% similar) in 184 aa overlap (18-197:10-181)

               10        20        30        40         50         
pF1KB6 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLK-DDRLGQHV-PTLH
                        .::: ::  ... :::::.::::... :: ..  .:.. ::. 
CCDS29         MGLLDRLSVLLGLKKKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG
                       10        20        30        40        50  

       60        70        80        90       100       110        
pF1KB6 PTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNAL
        . :..  ....::.::..:. . : .:..:    ..:.:..: .:. :.: .: ::..:
CCDS29 FSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTL
             60        70        80        90       100       110  

      120         130       140       150       160       170      
pF1KB6 MTDETISN--VPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVF
       ..   :..  .:::...::.:  ::..  :. ...             :.... .: .. 
CCDS29 LNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLL------------CLENIKDKPWHIC
            120       130       140                   150       160

        180       190            
pF1KB6 MCSVLKRQGYGEGFRWLSQYID    
         ...: .:  ::  ::.. :     
CCDS29 ASDAIKGEGLQEGVDWLQDQIQTVKT
              170       180      

>>CCDS3986.1 TRIM23 gene_id:373|Hs108|chr5                (546 aa)
 initn: 290 init1: 290 opt: 302  Z-score: 357.2  bits: 74.4 E(32554): 1.4e-13
Smith-Waterman score: 302; 35.8% identity (71.6% similar) in 134 aa overlap (27-160:406-539)

                   10        20        30        40        50      
pF1KB6     MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPT
                                     ..: ::::.:::::.:  ::.:.. : .::
CCDS39 EVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPT
         380       390       400       410       420       430     

         60        70        80        90       100       110      
pF1KB6 LHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELN
       .  . : .   .. :: .:.::... : .::.:    ...::.:: . ..:. :.. :: 
CCDS39 IGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELA
         440       450       460       470       480       490     

        120       130       140       150       160       170      
pF1KB6 ALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVF
        :.:.. . .. .::..:: : . :.: :.. :...:.    :.                
CCDS39 KLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSCFSDNM         
         500       510       520       530       540               

        180       190        
pF1KB6 MCSVLKRQGYGEGFRWLSQYID

>>CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3               (192 aa)
 initn: 284 init1: 198 opt: 297  Z-score: 357.2  bits: 72.9 E(32554): 1.4e-13
Smith-Waterman score: 319; 32.0% identity (64.6% similar) in 175 aa overlap (24-197:12-175)

               10        20        30        40        50        60
pF1KB6 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
                              :......::::.:::.:::. ::  .    .::.  .
CCDS31             MGSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFN
                           10        20        30        40        

                70        80        90       100       110         
pF1KB6 SEELTIA-GMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALM
        : . .  ....:..:.::.:. : ::  :    .:.:..:: .:..:: ::. ... ..
CCDS31 VEMIELERNLSLTVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHIL
       50        60        70        80        90       100        

     120       130       140       150       160       170         
pF1KB6 TDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCS
        .: :.:::...:.:: :   :.. : . ..: .            :  . :   :  : 
CCDS31 KNEHIKNVPVVLLANKQDMPGALTAEDITRMFKVK-----------KLCSDRNWYVQPCC
      110       120       130       140                  150       

     180       190                        
pF1KB6 VLKRQGYGEGFRWLSQYID                
       .:  .: ..::: :. ..                 
CCDS31 ALTGEGLAQGFRKLTGFVKSHMKSRGDTLAFFKQN
       160       170       180       190  

>>CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5                (574 aa)
 initn: 316 init1: 290 opt: 302  Z-score: 356.9  bits: 74.4 E(32554): 1.5e-13
Smith-Waterman score: 318; 32.7% identity (64.9% similar) in 171 aa overlap (27-197:406-565)

                   10        20        30        40        50      
pF1KB6     MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPT
                                     ..: ::::.:::::.:  ::.:.. : .::
CCDS39 EVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPT
         380       390       400       410       420       430     

         60        70        80        90       100       110      
pF1KB6 LHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELN
       .  . : .   .. :: .:.::... : .::.:    ...::.:: . ..:. :.. :: 
CCDS39 IGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELA
         440       450       460       470       480       490     

        120       130       140       150       160       170      
pF1KB6 ALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVF
        :.:.. . .. .::..:: : . :.: :.. :...:.    :           :   . 
CCDS39 KLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCG-----------RSWYIQ
         500       510       520       530                  540    

        180       190                
pF1KB6 MCSVLKRQGYGEGFRWLSQYID        
        :.. . .:  ::. :::. .         
CCDS39 GCDARSGMGLYEGLDWLSRQLVAAGVLDVA
          550       560       570    




198 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:11:44 2016 done: Sat Nov  5 04:11:45 2016
 Total Scan time:  1.590 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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