hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/Pfam.bin Sequence file: /tmp/20090424/iprscan-20090424-16454562/chunk_1/iprscan-20090424-16454562.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pF1KB7668 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00412.12.ls LIM domain 189.9 5.5e-54 2 PF00412.12.fs LIM domain 186.0 3.6e-53 2 PF00046.19.ls Homeobox domain 97.0 5.3e-26 1 PF00046.19.fs Homeobox domain 95.0 2.1e-25 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00412.12.ls 1/2 5 61 .. 1 61 [] 96.4 8e-26 PF00412.12.fs 1/2 5 61 .. 1 61 [] 94.4 1.1e-26 PF00412.12.fs 2/2 64 124 .. 1 61 [] 91.5 7.4e-26 PF00412.12.ls 2/2 64 124 .. 1 61 [] 93.6 5.7e-25 PF00046.19.fs 1/1 181 237 .. 1 57 [] 95.0 2.1e-25 PF00046.19.ls 1/1 181 237 .. 1 57 [] 97.0 5.3e-26 Alignments of top-scoring domains: PF00412.12.ls: domain 1 of 2, from 5 to 61: score 96.4, E = 8e-26 *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg CagC +pI+dr+l+ ++ld++wH++C +C++C+++L+e+ +f+++g pF1KB7668 5 CAGCERPILDRFLL-NVLDRAWHIKCVQCCECKTNLSEK--CFSREG 48 sklYCkhDyyklfg<-* klYCk+D++++fg pF1KB7668 49 -KLYCKNDFFRRFG 61 PF00412.12.fs: domain 1 of 2, from 5 to 61: score 94.4, E = 1.1e-26 *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg CagC +pI+dr+l+ ++ld++wH++C +C++C+++L+e+ +f+++g pF1KB7668 5 CAGCERPILDRFLL-NVLDRAWHIKCVQCCECKTNLSEK--CFSREG 48 sklYCkhDyyklfg<-* klYCk+D++++fg pF1KB7668 49 -KLYCKNDFFRRFG 61 PF00412.12.fs: domain 2 of 2, from 64 to 124: score 91.5, E = 7.4e-26 *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg CagC+++I++ +lvr+A+ kv+H++CF+C+vC+k+L++g e +++d+ pF1KB7668 64 CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDE 110 sklYCkhDyyklfg<-* +k++Ck Dy+ + pF1KB7668 111 NKFVCKDDYLSSSS 124 PF00412.12.ls: domain 2 of 2, from 64 to 124: score 93.6, E = 5.7e-25 *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg CagC+++I++ +lvr+A+ kv+H++CF+C+vC+k+L++g e +++d+ pF1KB7668 64 CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDE 110 sklYCkhDyyklfg<-* +k++Ck Dy+ + pF1KB7668 111 NKFVCKDDYLSSSS 124 PF00046.19.fs: domain 1 of 1, from 181 to 237: score 95.0, E = 2.1e-25 *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW r +RTt+ + Qle+L+++F+ +++P+r+ Re+LA+++gL r+++vW pF1KB7668 181 RGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVW 227 FQNRRaKwKk<-* FQNRR K+++ pF1KB7668 228 FQNRRSKERR 237 PF00046.19.ls: domain 1 of 1, from 181 to 237: score 97.0, E = 5.3e-26 *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW r +RTt+ + Qle+L+++F+ +++P+r+ Re+LA+++gL r+++vW pF1KB7668 181 RGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVW 227 FQNRRaKwKk<-* FQNRR K+++ pF1KB7668 228 FQNRRSKERR 237 //