Result of FASTA (omim) for pF1KE0695
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0695, 284 aa
  1>>>pF1KE0695 284 - 284 aa - 284 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1952+/-0.000357; mu= 15.7965+/- 0.022
 mean_var=65.3183+/-13.821, 0's: 0 Z-trim(113.9): 26  B-trim: 261 in 2/52
 Lambda= 0.158693
 statistics sampled from 23519 (23533) to 23519 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.67), E-opt: 0.2 (0.276), width:  16
 Scan time:  7.460

The best scores are:                                      opt bits E(85289)
NP_663629 (OMIM: 612896) RAD52 motif-containing pr ( 284) 1886 440.4 1.8e-123
NP_001156602 (OMIM: 612896) RAD52 motif-containing ( 261) 1681 393.5 2.2e-109
XP_011522811 (OMIM: 612896) PREDICTED: RAD52 motif ( 252) 1463 343.6 2.3e-94
NP_001030008 (OMIM: 612896) RAD52 motif-containing ( 236) 1458 342.4 4.8e-94
NP_001156593 (OMIM: 612896) RAD52 motif-containing ( 251) 1261 297.3 1.9e-80
NP_001156594 (OMIM: 612896) RAD52 motif-containing ( 228) 1056 250.4 2.4e-66
NP_001156592 (OMIM: 612896) RAD52 motif-containing ( 166)  882 210.4 1.8e-54
NP_001317123 (OMIM: 612896) RAD52 motif-containing ( 139)  881 210.2 1.8e-54
NP_001156597 (OMIM: 612896) RAD52 motif-containing ( 116)  676 163.2 2.1e-40
NP_001156596 (OMIM: 612896) RAD52 motif-containing ( 143)  677 163.5 2.1e-40
XP_011523080 (OMIM: 616557) PREDICTED: leucine-ric ( 837)  145 42.1  0.0042


>>NP_663629 (OMIM: 612896) RAD52 motif-containing protei  (284 aa)
 initn: 1886 init1: 1886 opt: 1886  Z-score: 2337.8  bits: 440.4 E(85289): 1.8e-123
Smith-Waterman score: 1886; 100.0% identity (100.0% similar) in 284 aa overlap (1-284:1-284)

               10        20        30        40        50        60
pF1KE0 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGV
              190       200       210       220       230       240

              250       260       270       280    
pF1KE0 RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
       ::::::::::::::::::::::::::::::::::::::::::::
NP_663 RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
              250       260       270       280    

>>NP_001156602 (OMIM: 612896) RAD52 motif-containing pro  (261 aa)
 initn: 1681 init1: 1681 opt: 1681  Z-score: 2084.7  bits: 393.5 E(85289): 2.2e-109
Smith-Waterman score: 1681; 99.6% identity (100.0% similar) in 253 aa overlap (32-284:9-261)

              10        20        30        40        50        60 
pF1KE0 AELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGF
                                     .:::::::::::::::::::::::::::::
NP_001                       MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGF
                                     10        20        30        

              70        80        90       100       110       120 
pF1KE0 YAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYY
       40        50        60        70        80        90        

             130       140       150       160       170       180 
pF1KE0 FGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVE
      100       110       120       130       140       150        

             190       200       210       220       230       240 
pF1KE0 EPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGVR
      160       170       180       190       200       210        

             250       260       270       280    
pF1KE0 CEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
       :::::::::::::::::::::::::::::::::::::::::::
NP_001 CEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
      220       230       240       250       260 

>>XP_011522811 (OMIM: 612896) PREDICTED: RAD52 motif-con  (252 aa)
 initn: 1463 init1: 1463 opt: 1463  Z-score: 1815.2  bits: 343.6 E(85289): 2.3e-94
Smith-Waterman score: 1463; 99.1% identity (99.6% similar) in 225 aa overlap (1-225:1-225)

               10        20        30        40        50        60
pF1KE0 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGV
       :::::::::::::::::::::::::::::::::::::::::: .:               
XP_011 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLGGGPDCSQLSNLGNSPSS
              190       200       210       220       230       240

              250       260       270       280    
pF1KE0 RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
                                                   
XP_011 ESLTSLVINCQV                                
              250                                  

>>NP_001030008 (OMIM: 612896) RAD52 motif-containing pro  (236 aa)
 initn: 1458 init1: 1458 opt: 1458  Z-score: 1809.4  bits: 342.4 E(85289): 4.8e-94
Smith-Waterman score: 1458; 100.0% identity (100.0% similar) in 222 aa overlap (1-222:1-222)

               10        20        30        40        50        60
pF1KE0 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGV
       ::::::::::::::::::::::::::::::::::::::::::                  
NP_001 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLGKTVLIILEVLQFQ    
              190       200       210       220       230          

              250       260       270       280    
pF1KE0 RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD

>>NP_001156593 (OMIM: 612896) RAD52 motif-containing pro  (251 aa)
 initn: 1675 init1: 1261 opt: 1261  Z-score: 1565.2  bits: 297.3 E(85289): 1.9e-80
Smith-Waterman score: 1613; 88.4% identity (88.4% similar) in 284 aa overlap (1-284:1-251)

               10        20        30        40        50        60
pF1KE0 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGV
       :::::::::                                 ::::::::::::::::::
NP_001 EEPMDKVEE---------------------------------ESGKIAVEYRPSEDIVGV
                                               190       200       

              250       260       270       280    
pF1KE0 RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
       ::::::::::::::::::::::::::::::::::::::::::::
NP_001 RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
       210       220       230       240       250 

>>NP_001156594 (OMIM: 612896) RAD52 motif-containing pro  (228 aa)
 initn: 1470 init1: 1056 opt: 1056  Z-score: 1312.2  bits: 250.4 E(85289): 2.4e-66
Smith-Waterman score: 1408; 86.6% identity (87.0% similar) in 253 aa overlap (32-284:9-228)

              10        20        30        40        50        60 
pF1KE0 AELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGF
                                     .:::::::::::::::::::::::::::::
NP_001                       MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGF
                                     10        20        30        

              70        80        90       100       110       120 
pF1KE0 YAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYY
       40        50        60        70        80        90        

             130       140       150       160       170       180 
pF1KE0 FGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVE
      100       110       120       130       140       150        

             190       200       210       220       230       240 
pF1KE0 EPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGVR
       ::::::::                                 :::::::::::::::::::
NP_001 EPMDKVEE---------------------------------ESGKIAVEYRPSEDIVGVR
      160                                        170       180     

             250       260       270       280    
pF1KE0 CEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
       :::::::::::::::::::::::::::::::::::::::::::
NP_001 CEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
         190       200       210       220        

>>NP_001156592 (OMIM: 612896) RAD52 motif-containing pro  (166 aa)
 initn: 882 init1: 882 opt: 882  Z-score: 1099.0  bits: 210.4 E(85289): 1.8e-54
Smith-Waterman score: 882; 99.3% identity (100.0% similar) in 134 aa overlap (1-134:1-134)

               10        20        30        40        50        60
pF1KE0 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
       :::::::::::::.                                              
NP_001 YFGFNGCSKRIIKVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD              
              130       140       150       160                    

>>NP_001317123 (OMIM: 612896) RAD52 motif-containing pro  (139 aa)
 initn: 881 init1: 881 opt: 881  Z-score: 1098.9  bits: 210.2 E(85289): 1.8e-54
Smith-Waterman score: 881; 100.0% identity (100.0% similar) in 133 aa overlap (1-133:1-133)

               10        20        30        40        50        60
pF1KE0 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
       :::::::::::::                                               
NP_001 YFGFNGCSKRIIKDHYHSL                                         
              130                                                  

>>NP_001156597 (OMIM: 612896) RAD52 motif-containing pro  (116 aa)
 initn: 676 init1: 676 opt: 676  Z-score: 846.4  bits: 163.2 E(85289): 2.1e-40
Smith-Waterman score: 676; 99.0% identity (100.0% similar) in 102 aa overlap (32-133:9-110)

              10        20        30        40        50        60 
pF1KE0 AELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGF
                                     .:::::::::::::::::::::::::::::
NP_001                       MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGF
                                     10        20        30        

              70        80        90       100       110       120 
pF1KE0 YAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYY
       40        50        60        70        80        90        

             130       140       150       160       170       180 
pF1KE0 FGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVE
       ::::::::::::                                                
NP_001 FGFNGCSKRIIKDHYHSL                                          
      100       110                                                

>>NP_001156596 (OMIM: 612896) RAD52 motif-containing pro  (143 aa)
 initn: 676 init1: 676 opt: 677  Z-score: 846.3  bits: 163.5 E(85289): 2.1e-40
Smith-Waterman score: 677; 98.1% identity (100.0% similar) in 103 aa overlap (32-134:9-111)

              10        20        30        40        50        60 
pF1KE0 AELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGF
                                     .:::::::::::::::::::::::::::::
NP_001                       MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGF
                                     10        20        30        

              70        80        90       100       110       120 
pF1KE0 YAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYY
       40        50        60        70        80        90        

             130       140       150       160       170       180 
pF1KE0 FGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVE
       ::::::::::::.                                               
NP_001 FGFNGCSKRIIKVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD               
      100       110       120       130       140                  




284 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:49:43 2016 done: Sat Nov  5 02:49:44 2016
 Total Scan time:  7.460 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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