Result of FASTA (omim) for pF1KE0688
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0688, 401 aa
  1>>>pF1KE0688 401 - 401 aa - 401 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2387+/-0.000346; mu= 5.0953+/- 0.022
 mean_var=200.5886+/-42.141, 0's: 0 Z-trim(120.9): 26  B-trim: 667 in 2/56
 Lambda= 0.090557
 statistics sampled from 36844 (36870) to 36844 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.432), width:  16
 Scan time:  9.660

The best scores are:                                      opt bits E(85289)
NP_001139019 (OMIM: 606935) splicing factor 45 [Ho ( 401) 2645 357.8 2.7e-98
NP_116294 (OMIM: 606935) splicing factor 45 [Homo  ( 401) 2645 357.8 2.7e-98
XP_016868729 (OMIM: 604819,615583) PREDICTED: poly ( 499)  236 43.1  0.0018
NP_001258029 (OMIM: 604819,615583) poly(U)-binding ( 499)  236 43.1  0.0018
NP_001258026 (OMIM: 604819,615583) poly(U)-binding ( 513)  236 43.1  0.0018
NP_001129505 (OMIM: 604819,615583) poly(U)-binding ( 516)  236 43.1  0.0018
XP_016868728 (OMIM: 604819,615583) PREDICTED: poly ( 516)  236 43.1  0.0018
NP_001258028 (OMIM: 604819,615583) poly(U)-binding ( 530)  236 43.2  0.0019
NP_001258025 (OMIM: 604819,615583) poly(U)-binding ( 541)  236 43.2  0.0019
NP_055096 (OMIM: 604819,615583) poly(U)-binding-sp ( 542)  236 43.2  0.0019
NP_001258027 (OMIM: 604819,615583) poly(U)-binding ( 558)  236 43.2  0.0019
NP_510965 (OMIM: 604819,615583) poly(U)-binding-sp ( 559)  236 43.2  0.0019
XP_016868725 (OMIM: 604819,615583) PREDICTED: poly ( 579)  236 43.2   0.002
XP_011515232 (OMIM: 604819,615583) PREDICTED: poly ( 579)  236 43.2   0.002
XP_016868724 (OMIM: 604819,615583) PREDICTED: poly ( 584)  236 43.2   0.002
XP_016868723 (OMIM: 604819,615583) PREDICTED: poly ( 596)  236 43.2   0.002
XP_016868727 (OMIM: 604819,615583) PREDICTED: poly ( 596)  236 43.2   0.002
XP_016868726 (OMIM: 604819,615583) PREDICTED: poly ( 596)  236 43.2   0.002
XP_011515231 (OMIM: 604819,615583) PREDICTED: poly ( 596)  236 43.2   0.002


>>NP_001139019 (OMIM: 606935) splicing factor 45 [Homo s  (401 aa)
 initn: 2645 init1: 2645 opt: 2645  Z-score: 1885.6  bits: 357.8 E(85289): 2.7e-98
Smith-Waterman score: 2645; 100.0% identity (100.0% similar) in 401 aa overlap (1-401:1-401)

               10        20        30        40        50        60
pF1KE0 MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVKRQREERQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVKRQREERQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 RQRELERQKEIEEREKRRKDRHEASGFARRPDPDSDEDEDYERERRKRSMGGAAIAPPTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RQRELERQKEIEEREKRRKDRHEASGFARRPDPDSDEDEDYERERRKRSMGGAAIAPPTS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPSNSFLANMGGTVAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPSNSFLANMGGTVAH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 KIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKDASKKSDSNPLTEIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKDASKKSDSNPLTEIL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFE
              310       320       330       340       350       360

              370       380       390       400 
pF1KE0 RVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLDLAEQV
       :::::::::::::::::::::::::::::::::::::::::
NP_001 RVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLDLAEQV
              370       380       390       400 

>>NP_116294 (OMIM: 606935) splicing factor 45 [Homo sapi  (401 aa)
 initn: 2645 init1: 2645 opt: 2645  Z-score: 1885.6  bits: 357.8 E(85289): 2.7e-98
Smith-Waterman score: 2645; 100.0% identity (100.0% similar) in 401 aa overlap (1-401:1-401)

               10        20        30        40        50        60
pF1KE0 MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVKRQREERQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 GSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVKRQREERQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 RQRELERQKEIEEREKRRKDRHEASGFARRPDPDSDEDEDYERERRKRSMGGAAIAPPTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 RQRELERQKEIEEREKRRKDRHEASGFARRPDPDSDEDEDYERERRKRSMGGAAIAPPTS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPSNSFLANMGGTVAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPSNSFLANMGGTVAH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 KIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKDASKKSDSNPLTEIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 KIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKDASKKSDSNPLTEIL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFE
              310       320       330       340       350       360

              370       380       390       400 
pF1KE0 RVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLDLAEQV
       :::::::::::::::::::::::::::::::::::::::::
NP_116 RVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLDLAEQV
              370       380       390       400 

>>XP_016868729 (OMIM: 604819,615583) PREDICTED: poly(U)-  (499 aa)
 initn: 239 init1: 124 opt: 236  Z-score: 183.4  bits: 43.1 E(85289): 0.0018
Smith-Waterman score: 236; 41.6% identity (65.3% similar) in 101 aa overlap (301-398:398-498)

              280       290       300       310       320       330
pF1KE0 SKRGGKIIVGDATEKDASKKSDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEEC
                                     :  . :..:::::   ..:.::: :. :::
XP_016 SERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEEC
       370       380       390       400       410       420       

              340        350         360       370       380       
pF1KE0 EKYGKVGKCVIF-EIPGAPDDEA--VRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY
        :.: :.. .:. :  :  .:    :.::.::  .  . ::.  ::::.:.:: : :  :
XP_016 GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY
       430       440       450       460       470       480       

       390       400 
pF1KE0 NLDKFRVLDLAEQV
       . ..:   ::.   
XP_016 DQERFDNSDLSA  
       490           

>>NP_001258029 (OMIM: 604819,615583) poly(U)-binding-spl  (499 aa)
 initn: 239 init1: 124 opt: 236  Z-score: 183.4  bits: 43.1 E(85289): 0.0018
Smith-Waterman score: 236; 41.6% identity (65.3% similar) in 101 aa overlap (301-398:398-498)

              280       290       300       310       320       330
pF1KE0 SKRGGKIIVGDATEKDASKKSDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEEC
                                     :  . :..:::::   ..:.::: :. :::
NP_001 SERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEEC
       370       380       390       400       410       420       

              340        350         360       370       380       
pF1KE0 EKYGKVGKCVIF-EIPGAPDDEA--VRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY
        :.: :.. .:. :  :  .:    :.::.::  .  . ::.  ::::.:.:: : :  :
NP_001 GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY
       430       440       450       460       470       480       

       390       400 
pF1KE0 NLDKFRVLDLAEQV
       . ..:   ::.   
NP_001 DQERFDNSDLSA  
       490           

>>NP_001258026 (OMIM: 604819,615583) poly(U)-binding-spl  (513 aa)
 initn: 239 init1: 124 opt: 236  Z-score: 183.3  bits: 43.1 E(85289): 0.0018
Smith-Waterman score: 236; 41.6% identity (65.3% similar) in 101 aa overlap (301-398:412-512)

              280       290       300       310       320       330
pF1KE0 SKRGGKIIVGDATEKDASKKSDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEEC
                                     :  . :..:::::   ..:.::: :. :::
NP_001 SERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEEC
             390       400       410       420       430       440 

              340        350         360       370       380       
pF1KE0 EKYGKVGKCVIF-EIPGAPDDEA--VRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY
        :.: :.. .:. :  :  .:    :.::.::  .  . ::.  ::::.:.:: : :  :
NP_001 GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY
             450       460       470       480       490       500 

       390       400 
pF1KE0 NLDKFRVLDLAEQV
       . ..:   ::.   
NP_001 DQERFDNSDLSA  
             510     

>>NP_001129505 (OMIM: 604819,615583) poly(U)-binding-spl  (516 aa)
 initn: 239 init1: 124 opt: 236  Z-score: 183.2  bits: 43.1 E(85289): 0.0018
Smith-Waterman score: 236; 41.6% identity (65.3% similar) in 101 aa overlap (301-398:415-515)

              280       290       300       310       320       330
pF1KE0 SKRGGKIIVGDATEKDASKKSDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEEC
                                     :  . :..:::::   ..:.::: :. :::
NP_001 SERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEEC
          390       400       410       420       430       440    

              340        350         360       370       380       
pF1KE0 EKYGKVGKCVIF-EIPGAPDDEA--VRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY
        :.: :.. .:. :  :  .:    :.::.::  .  . ::.  ::::.:.:: : :  :
NP_001 GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY
          450       460       470       480       490       500    

       390       400 
pF1KE0 NLDKFRVLDLAEQV
       . ..:   ::.   
NP_001 DQERFDNSDLSA  
          510        

>>XP_016868728 (OMIM: 604819,615583) PREDICTED: poly(U)-  (516 aa)
 initn: 239 init1: 124 opt: 236  Z-score: 183.2  bits: 43.1 E(85289): 0.0018
Smith-Waterman score: 236; 41.6% identity (65.3% similar) in 101 aa overlap (301-398:415-515)

              280       290       300       310       320       330
pF1KE0 SKRGGKIIVGDATEKDASKKSDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEEC
                                     :  . :..:::::   ..:.::: :. :::
XP_016 SERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEEC
          390       400       410       420       430       440    

              340        350         360       370       380       
pF1KE0 EKYGKVGKCVIF-EIPGAPDDEA--VRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY
        :.: :.. .:. :  :  .:    :.::.::  .  . ::.  ::::.:.:: : :  :
XP_016 GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY
          450       460       470       480       490       500    

       390       400 
pF1KE0 NLDKFRVLDLAEQV
       . ..:   ::.   
XP_016 DQERFDNSDLSA  
          510        

>>NP_001258028 (OMIM: 604819,615583) poly(U)-binding-spl  (530 aa)
 initn: 239 init1: 124 opt: 236  Z-score: 183.1  bits: 43.2 E(85289): 0.0019
Smith-Waterman score: 236; 41.6% identity (65.3% similar) in 101 aa overlap (301-398:429-529)

              280       290       300       310       320       330
pF1KE0 SKRGGKIIVGDATEKDASKKSDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEEC
                                     :  . :..:::::   ..:.::: :. :::
NP_001 SERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEEC
      400       410       420       430       440       450        

              340        350         360       370       380       
pF1KE0 EKYGKVGKCVIF-EIPGAPDDEA--VRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY
        :.: :.. .:. :  :  .:    :.::.::  .  . ::.  ::::.:.:: : :  :
NP_001 GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY
      460       470       480       490       500       510        

       390       400 
pF1KE0 NLDKFRVLDLAEQV
       . ..:   ::.   
NP_001 DQERFDNSDLSA  
      520       530  

>>NP_001258025 (OMIM: 604819,615583) poly(U)-binding-spl  (541 aa)
 initn: 239 init1: 124 opt: 236  Z-score: 183.0  bits: 43.2 E(85289): 0.0019
Smith-Waterman score: 236; 41.6% identity (65.3% similar) in 101 aa overlap (301-398:440-540)

              280       290       300       310       320       330
pF1KE0 SKRGGKIIVGDATEKDASKKSDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEEC
                                     :  . :..:::::   ..:.::: :. :::
NP_001 SERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEEC
     410       420       430       440       450       460         

              340        350         360       370       380       
pF1KE0 EKYGKVGKCVIF-EIPGAPDDEA--VRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY
        :.: :.. .:. :  :  .:    :.::.::  .  . ::.  ::::.:.:: : :  :
NP_001 GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY
     470       480       490       500       510       520         

       390       400 
pF1KE0 NLDKFRVLDLAEQV
       . ..:   ::.   
NP_001 DQERFDNSDLSA  
     530       540   

>>NP_055096 (OMIM: 604819,615583) poly(U)-binding-splici  (542 aa)
 initn: 239 init1: 124 opt: 236  Z-score: 183.0  bits: 43.2 E(85289): 0.0019
Smith-Waterman score: 236; 41.6% identity (65.3% similar) in 101 aa overlap (301-398:441-541)

              280       290       300       310       320       330
pF1KE0 SKRGGKIIVGDATEKDASKKSDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEEC
                                     :  . :..:::::   ..:.::: :. :::
NP_055 SERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEEC
              420       430       440       450       460       470

              340        350         360       370       380       
pF1KE0 EKYGKVGKCVIF-EIPGAPDDEA--VRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY
        :.: :.. .:. :  :  .:    :.::.::  .  . ::.  ::::.:.:: : :  :
NP_055 GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY
              480       490       500       510       520       530

       390       400 
pF1KE0 NLDKFRVLDLAEQV
       . ..:   ::.   
NP_055 DQERFDNSDLSA  
              540    




401 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:46:42 2016 done: Sat Nov  5 02:46:44 2016
 Total Scan time:  9.660 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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