Result of FASTA (ccds) for pF1KE0617
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0617, 183 aa
  1>>>pF1KE0617 183 - 183 aa - 183 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8689+/-0.000969; mu= 5.8212+/- 0.058
 mean_var=168.3009+/-35.957, 0's: 0 Z-trim(110.3): 127  B-trim: 0 in 0/50
 Lambda= 0.098862
 statistics sampled from 11327 (11474) to 11327 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.352), width:  16
 Scan time:  1.900

The best scores are:                                      opt bits E(32554)
CCDS30629.1 SRSF10 gene_id:10772|Hs108|chr1        ( 183) 1269 192.4 1.3e-49
CCDS53281.1 SRSF10 gene_id:10772|Hs108|chr1        ( 182) 1252 190.0 6.9e-49
CCDS30630.1 SRSF10 gene_id:10772|Hs108|chr1        ( 262) 1136 173.6 8.4e-44
CCDS53283.1 SRSF10 gene_id:10772|Hs108|chr1        ( 173) 1126 172.0 1.7e-43
CCDS53282.1 SRSF10 gene_id:10772|Hs108|chr1        ( 261) 1119 171.2 4.5e-43
CCDS72728.1 SRSF10 gene_id:10772|Hs108|chr1        ( 172) 1109 169.6 9.2e-43
CCDS53280.1 SRSF10 gene_id:10772|Hs108|chr1        ( 165)  998 153.7 5.2e-38
CCDS47459.1 SRSF12 gene_id:135295|Hs108|chr6       ( 261)  734 116.3 1.5e-26


>>CCDS30629.1 SRSF10 gene_id:10772|Hs108|chr1             (183 aa)
 initn: 1269 init1: 1269 opt: 1269  Z-score: 1004.2  bits: 192.4 E(32554): 1.3e-49
Smith-Waterman score: 1269; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:1-183)

               10        20        30        40        50        60
pF1KE0 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTS
              130       140       150       160       170       180

          
pF1KE0 RKI
       :::
CCDS30 RKI
          

>>CCDS53281.1 SRSF10 gene_id:10772|Hs108|chr1             (182 aa)
 initn: 1005 init1: 1005 opt: 1252  Z-score: 991.2  bits: 190.0 E(32554): 6.9e-49
Smith-Waterman score: 1252; 99.5% identity (99.5% similar) in 183 aa overlap (1-183:1-182)

               10        20        30        40        50        60
pF1KE0 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTS
       :::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
CCDS53 SRSYERRRSRSRSFDYNYRRSYSPRN-RPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTS
              130       140        150       160       170         

          
pF1KE0 RKI
       :::
CCDS53 RKI
     180  

>>CCDS30630.1 SRSF10 gene_id:10772|Hs108|chr1             (262 aa)
 initn: 1133 init1: 1133 opt: 1136  Z-score: 899.8  bits: 173.6 E(32554): 8.4e-44
Smith-Waterman score: 1136; 92.8% identity (95.6% similar) in 181 aa overlap (1-181:1-180)

               10        20        30        40        50        60
pF1KE0 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTS
       :::::::::::::::::::::::::::::::::::::::::::: .   : ..: .  .:
CCDS30 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFK-HRNRSFSRSKSNS
              130       140       150       160        170         

                                                                   
pF1KE0 RKI                                                         
       :                                                           
CCDS30 RSRSKSQPKKEMKAKSRSRSASHTKTRGTSKTDSKTHYKSGSRYEKESRKKEPPRSKSQS
     180       190       200       210       220       230         

>>CCDS53283.1 SRSF10 gene_id:10772|Hs108|chr1             (173 aa)
 initn: 1126 init1: 1126 opt: 1126  Z-score: 894.3  bits: 172.0 E(32554): 1.7e-43
Smith-Waterman score: 1126; 100.0% identity (100.0% similar) in 163 aa overlap (1-163:1-163)

               10        20        30        40        50        60
pF1KE0 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTS
       :::::::::::::::::::::::::::::::::::::::::::                 
CCDS53 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDSQVSKKKNER       
              130       140       150       160       170          

          
pF1KE0 RKI

>>CCDS53282.1 SRSF10 gene_id:10772|Hs108|chr1             (261 aa)
 initn: 1041 init1: 1005 opt: 1119  Z-score: 886.7  bits: 171.2 E(32554): 4.5e-43
Smith-Waterman score: 1119; 92.3% identity (95.0% similar) in 181 aa overlap (1-181:1-179)

               10        20        30        40        50        60
pF1KE0 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTS
       :::::::::::::::::::::::::: ::::::::::::::::: .   : ..: .  .:
CCDS53 SRSYERRRSRSRSFDYNYRRSYSPRN-RPTGRPRRSRSHSDNDRFK-HRNRSFSRSKSNS
              130       140        150       160        170        

                                                                   
pF1KE0 RKI                                                         
       :                                                           
CCDS53 RSRSKSQPKKEMKAKSRSRSASHTKTRGTSKTDSKTHYKSGSRYEKESRKKEPPRSKSQS
      180       190       200       210       220       230        

>>CCDS72728.1 SRSF10 gene_id:10772|Hs108|chr1             (172 aa)
 initn: 1005 init1: 1005 opt: 1109  Z-score: 881.2  bits: 169.6 E(32554): 9.2e-43
Smith-Waterman score: 1109; 99.4% identity (99.4% similar) in 163 aa overlap (1-163:1-162)

               10        20        30        40        50        60
pF1KE0 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTS
       :::::::::::::::::::::::::: ::::::::::::::::                 
CCDS72 SRSYERRRSRSRSFDYNYRRSYSPRN-RPTGRPRRSRSHSDNDSQVSKKKNER       
              130       140        150       160       170         

          
pF1KE0 RKI

>>CCDS53280.1 SRSF10 gene_id:10772|Hs108|chr1             (165 aa)
 initn: 998 init1: 998 opt: 998  Z-score: 795.9  bits: 153.7 E(32554): 5.2e-38
Smith-Waterman score: 1091; 89.6% identity (90.2% similar) in 183 aa overlap (1-183:1-165)

               10        20        30        40        50        60
pF1KE0 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTS
       :::::::::::::::::::::::::                  .::::::::::::::::
CCDS53 SRSYERRRSRSRSFDYNYRRSYSPR------------------KPNCSWNTQYSSAYYTS
              130       140                         150       160  

          
pF1KE0 RKI
       :::
CCDS53 RKI
          

>>CCDS47459.1 SRSF12 gene_id:135295|Hs108|chr6            (261 aa)
 initn: 897 init1: 641 opt: 734  Z-score: 590.0  bits: 116.3 E(32554): 1.5e-26
Smith-Waterman score: 734; 65.2% identity (77.9% similar) in 181 aa overlap (1-175:1-180)

               10        20        30        40        50        60
pF1KE0 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
       :::: ::::::::.::::: :: :::::::::::::::::.:::::::::::::::::::
CCDS47 MSRYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFED
               10        20        30        40        50        60

               70        80        90       100         110        
pF1KE0 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSS--RYDDYDRYRR
       ::::::::.::.:::.:::::::::::::::::.:::.:: :.  : :  : .     ::
CCDS47 VRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKE-RHPCSPSDHRRSRSPSQRR
               70        80        90       100        110         

      120           130       140       150       160       170    
pF1KE0 SRSRS----YERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQYS
       .::::     .:::: : . . . : :::  .::  . :::: :  ..  :  .....  
CCDS47 TRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGR
     120       130       140       150       160       170         

          180                                                      
pF1KE0 SAYYTSRKI                                                   
       :                                                           
CCDS47 SRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQ
     180       190       200       210       220       230         




183 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 20:05:48 2016 done: Wed Nov  2 20:05:49 2016
 Total Scan time:  1.900 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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