Result of FASTA (ccds) for pF1KE3935
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3935, 466 aa
  1>>>pF1KE3935     466 - 466 aa - 466 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.4740+/-0.000949; mu= -3.5202+/- 0.058
 mean_var=302.5414+/-62.198, 0's: 0 Z-trim(115.3): 22  B-trim: 2 in 1/52
 Lambda= 0.073736
 statistics sampled from 15799 (15817) to 15799 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.486), width:  16
 Scan time:  3.760

The best scores are:                                      opt bits E(32554)
CCDS4319.1 G3BP1 gene_id:10146|Hs108|chr5          ( 466) 3191 352.6 5.1e-97
CCDS3571.1 G3BP2 gene_id:9908|Hs108|chr4           ( 482) 1600 183.3 4.7e-46
CCDS3572.1 G3BP2 gene_id:9908|Hs108|chr4           ( 449) 1025 122.2 1.1e-27


>>CCDS4319.1 G3BP1 gene_id:10146|Hs108|chr5               (466 aa)
 initn: 3191 init1: 3191 opt: 3191  Z-score: 1855.2  bits: 352.6 E(32554): 5.1e-97
Smith-Waterman score: 3191; 100.0% identity (100.0% similar) in 466 aa overlap (1-466:1-466)

               10        20        30        40        50        60
pF1KE3 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQAVVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQAVVS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 NDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADIAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 NDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADIAQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 TVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQRD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 QRVREQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKDFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QRVREQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKDFF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 QSYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKTRAARE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QSYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKTRAARE
              370       380       390       400       410       420

              430       440       450       460      
pF1KE3 GDRRDNRLRGPGGPRGGLGGGMRGPPRGGMVQKPGFGVGRGLAPRQ
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GDRRDNRLRGPGGPRGGLGGGMRGPPRGGMVQKPGFGVGRGLAPRQ
              430       440       450       460      

>>CCDS3571.1 G3BP2 gene_id:9908|Hs108|chr4                (482 aa)
 initn: 1595 init1: 860 opt: 1600  Z-score: 940.3  bits: 183.3 E(32554): 4.7e-46
Smith-Waterman score: 1981; 65.4% identity (80.3% similar) in 482 aa overlap (1-461:1-471)

               10        20        30        40        50        60
pF1KE3 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE
       ::::::::::::::::::::::::.::..::::::.::::::::.:..::: .:::::..
CCDS35 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV
       ::.::.: ::..::::::::::::::.:::::::::::::..:  :.:::::::::::::
CCDS35 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV
               70        80        90       100       110       120

              130       140       150        160       170         
pF1KE3 ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEP-EERQQTPEVVPDDSGT-FYDQAV
        ::::::::.:::.:::::    : .::::.::::  :::: .:: : ..... .:.   
CCDS35 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP
              130       140       150       160       170       180

      180       190       200       210       220       230        
pF1KE3 VSNDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADI
       :.: .:: :::   ::::.:: : . :      : ::. : :..  :  .::..: ::. 
CCDS35 VTNGIEEPLEESSHEPEPEPESETKTE------ELKPQ-VEEKNLEELEEKSTTPPPAEP
              190       200             210        220       230   

      240       250       260       270       280       290        
pF1KE3 AQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQ
       ..  ::  ..:::::::::::::::.:  .:::::: :.:.:::: :.::: :  : :  
CCDS35 VSLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPHV-KAPVSQPRVEAKPEVQSQPPRV-
           240       250       260        270       280       290  

      300       310       320       330       340       350        
pF1KE3 RDQRVREQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKD
       :.:: :: : ..:: ::::: :   ::.: . ::..:.:::::::.:::::..:..:::.
CCDS35 REQRPRE-RPGFPP-RGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKE
              300        310       320       330       340         

      360       370          380       390       400       410     
pF1KE3 FFQSYGNVVELRINS---GGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKT
       ::.:.:::::::::.   :::::::::::::::::::..:  .:::::::::::::::::
CCDS35 FFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKT
     350       360       370       380       390       400         

         420                430       440              450         
pF1KE3 RAARE-------GDRRDNRL--RGPGGPRGGLGGGM------RGPP-RGGMVQKPGFGVG
       :::::        :::: :   :::::::: .::::      :::: ::::.:: : : :
CCDS35 RAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRG
     410       420       430       440       450       460         

     460            
pF1KE3 RGLAPRQ      
        :           
CCDS35 TGQMEGRFTGQRR
     470       480  

>>CCDS3572.1 G3BP2 gene_id:9908|Hs108|chr4                (449 aa)
 initn: 1446 init1: 860 opt: 1025  Z-score: 610.2  bits: 122.2 E(32554): 1.1e-27
Smith-Waterman score: 1745; 60.4% identity (74.3% similar) in 482 aa overlap (1-461:1-438)

               10        20        30        40        50        60
pF1KE3 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE
       ::::::::::::::::::::::::.::..::::::.::::::::.:..::: .:::::..
CCDS35 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV
       ::.::.: ::..::::::::::::::.:::::::::::::..:  :.:::::::::::::
CCDS35 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV
               70        80        90       100       110       120

              130       140       150        160       170         
pF1KE3 ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEP-EERQQTPEVVPDDSGT-FYDQAV
        ::::::::.:::.:::::    : .::::.::::  :::: .:: : ..... .:.   
CCDS35 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP
              130       140       150       160       170       180

      180       190       200       210       220       230        
pF1KE3 VSNDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADI
       :.: .:: :::   ::::.:: : . :      : ::. : :..  :  .::..: ::. 
CCDS35 VTNGIEEPLEESSHEPEPEPESETKTE------ELKPQ-VEEKNLEELEEKSTTPPPAEP
              190       200             210        220       230   

      240       250       260       270       280       290        
pF1KE3 AQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQ
       ..  ::               ::                   .:: :.::: :  : :  
CCDS35 VSLPQE---------------PP-------------------KPRVEAKPEVQSQPPRV-
                          240                          250         

      300       310       320       330       340       350        
pF1KE3 RDQRVREQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKD
       :.:: :: : ..:: ::::: :   ::.: . ::..:.:::::::.:::::..:..:::.
CCDS35 REQRPRE-RPGFPP-RGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKE
      260        270        280       290       300       310      

      360       370          380       390       400       410     
pF1KE3 FFQSYGNVVELRINS---GGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKT
       ::.:.:::::::::.   :::::::::::::::::::..:  .:::::::::::::::::
CCDS35 FFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKT
        320       330       340       350       360       370      

         420                430       440              450         
pF1KE3 RAARE-------GDRRDNRL--RGPGGPRGGLGGGM------RGPP-RGGMVQKPGFGVG
       :::::        :::: :   :::::::: .::::      :::: ::::.:: : : :
CCDS35 RAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRG
        380       390       400       410       420       430      

     460            
pF1KE3 RGLAPRQ      
        :           
CCDS35 TGQMEGRFTGQRR
        440         




466 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov 18 17:34:33 2016 done: Fri Nov 18 17:34:34 2016
 Total Scan time:  3.760 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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