FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE0291, 407 aa 1>>>pF1KE0291 407 - 407 aa - 407 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.5990+/-0.000326; mu= 13.4216+/- 0.021 mean_var=148.9210+/-29.277, 0's: 0 Z-trim(120.2): 33 B-trim: 56 in 2/57 Lambda= 0.105098 statistics sampled from 35204 (35251) to 35204 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.413), width: 16 Scan time: 8.610 The best scores are: opt bits E(85289) NP_001073913 (OMIM: 610638) immunoglobulin superfa ( 407) 2833 441.0 2.6e-123 XP_011527774 (OMIM: 610638) PREDICTED: immunoglobu ( 497) 2603 406.2 9.3e-113 XP_016883769 (OMIM: 610638) PREDICTED: immunoglobu ( 502) 2400 375.4 1.7e-103 XP_011527775 (OMIM: 610638) PREDICTED: immunoglobu ( 488) 1976 311.1 3.8e-84 XP_016883768 (OMIM: 610638) PREDICTED: immunoglobu ( 519) 1976 311.1 4e-84 >>NP_001073913 (OMIM: 610638) immunoglobulin superfamily (407 aa) initn: 2833 init1: 2833 opt: 2833 Z-score: 2334.9 bits: 441.0 E(85289): 2.6e-123 Smith-Waterman score: 2833; 100.0% identity (100.0% similar) in 407 aa overlap (1-407:1-407) 10 20 30 40 50 60 pF1KE0 MGQKERSTADTLPDLEEWKSAAGLRWWQTAVVDGSGSGNEVIEGPQNARVLKGSQARFNC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MGQKERSTADTLPDLEEWKSAAGLRWWQTAVVDGSGSGNEVIEGPQNARVLKGSQARFNC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 TVSQGWKLIMWALSDMVVLSVRPMEPIITNDRFTSQRYDQGGNFTSEMIIHNVEPSDSGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TVSQGWKLIMWALSDMVVLSVRPMEPIITNDRFTSQRYDQGGNFTSEMIIHNVEPSDSGN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 IRCSLQNSRLHGSAYLTVQVMGELFIPSVNLVVAENEPCEVTCLPSHWTRLPDISWELGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IRCSLQNSRLHGSAYLTVQVMGELFIPSVNLVVAENEPCEVTCLPSHWTRLPDISWELGL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE0 LVSHSSYYFVPEPSDLQSAVSILALTPQSNGTLTCVATWKSLKARKSATVNLTVIRCPQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LVSHSSYYFVPEPSDLQSAVSILALTPQSNGTLTCVATWKSLKARKSATVNLTVIRCPQD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE0 TGGGINIPGVLSSLPSLGFSLPTWGKVGLGLAGTMLLTPTCTLTIRCCCCRRRCCGCNCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TGGGINIPGVLSSLPSLGFSLPTWGKVGLGLAGTMLLTPTCTLTIRCCCCRRRCCGCNCC 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE0 CRCCFCCRRKRGFRIQFQKKSEKEKTNKETETESGNENSGYNSDEQKTTDTASLPPKSCE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 CRCCFCCRRKRGFRIQFQKKSEKEKTNKETETESGNENSGYNSDEQKTTDTASLPPKSCE 310 320 330 340 350 360 370 380 390 400 pF1KE0 SSDPEQRNSSCGPPHQRADQRPPRPASHPQASFNLASPEKVSNTTVV ::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SSDPEQRNSSCGPPHQRADQRPPRPASHPQASFNLASPEKVSNTTVV 370 380 390 400 >>XP_011527774 (OMIM: 610638) PREDICTED: immunoglobulin (497 aa) initn: 2603 init1: 2603 opt: 2603 Z-score: 2145.3 bits: 406.2 E(85289): 9.3e-113 Smith-Waterman score: 2603; 100.0% identity (100.0% similar) in 374 aa overlap (34-407:124-497) 10 20 30 40 50 60 pF1KE0 KERSTADTLPDLEEWKSAAGLRWWQTAVVDGSGSGNEVIEGPQNARVLKGSQARFNCTVS :::::::::::::::::::::::::::::: XP_011 RFYFLHQDSSHATNGESSQLLELIFLEKNAGSGSGNEVIEGPQNARVLKGSQARFNCTVS 100 110 120 130 140 150 70 80 90 100 110 120 pF1KE0 QGWKLIMWALSDMVVLSVRPMEPIITNDRFTSQRYDQGGNFTSEMIIHNVEPSDSGNIRC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QGWKLIMWALSDMVVLSVRPMEPIITNDRFTSQRYDQGGNFTSEMIIHNVEPSDSGNIRC 160 170 180 190 200 210 130 140 150 160 170 180 pF1KE0 SLQNSRLHGSAYLTVQVMGELFIPSVNLVVAENEPCEVTCLPSHWTRLPDISWELGLLVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SLQNSRLHGSAYLTVQVMGELFIPSVNLVVAENEPCEVTCLPSHWTRLPDISWELGLLVS 220 230 240 250 260 270 190 200 210 220 230 240 pF1KE0 HSSYYFVPEPSDLQSAVSILALTPQSNGTLTCVATWKSLKARKSATVNLTVIRCPQDTGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 HSSYYFVPEPSDLQSAVSILALTPQSNGTLTCVATWKSLKARKSATVNLTVIRCPQDTGG 280 290 300 310 320 330 250 260 270 280 290 300 pF1KE0 GINIPGVLSSLPSLGFSLPTWGKVGLGLAGTMLLTPTCTLTIRCCCCRRRCCGCNCCCRC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GINIPGVLSSLPSLGFSLPTWGKVGLGLAGTMLLTPTCTLTIRCCCCRRRCCGCNCCCRC 340 350 360 370 380 390 310 320 330 340 350 360 pF1KE0 CFCCRRKRGFRIQFQKKSEKEKTNKETETESGNENSGYNSDEQKTTDTASLPPKSCESSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 CFCCRRKRGFRIQFQKKSEKEKTNKETETESGNENSGYNSDEQKTTDTASLPPKSCESSD 400 410 420 430 440 450 370 380 390 400 pF1KE0 PEQRNSSCGPPHQRADQRPPRPASHPQASFNLASPEKVSNTTVV :::::::::::::::::::::::::::::::::::::::::::: XP_011 PEQRNSSCGPPHQRADQRPPRPASHPQASFNLASPEKVSNTTVV 460 470 480 490 >>XP_016883769 (OMIM: 610638) PREDICTED: immunoglobulin (502 aa) initn: 2484 init1: 2400 opt: 2400 Z-score: 1978.9 bits: 375.4 E(85289): 1.7e-103 Smith-Waterman score: 2400; 99.4% identity (100.0% similar) in 345 aa overlap (34-378:124-468) 10 20 30 40 50 60 pF1KE0 KERSTADTLPDLEEWKSAAGLRWWQTAVVDGSGSGNEVIEGPQNARVLKGSQARFNCTVS :::::::::::::::::::::::::::::: XP_016 RFYFLHQDSSHATNGESSQLLELIFLEKNAGSGSGNEVIEGPQNARVLKGSQARFNCTVS 100 110 120 130 140 150 70 80 90 100 110 120 pF1KE0 QGWKLIMWALSDMVVLSVRPMEPIITNDRFTSQRYDQGGNFTSEMIIHNVEPSDSGNIRC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QGWKLIMWALSDMVVLSVRPMEPIITNDRFTSQRYDQGGNFTSEMIIHNVEPSDSGNIRC 160 170 180 190 200 210 130 140 150 160 170 180 pF1KE0 SLQNSRLHGSAYLTVQVMGELFIPSVNLVVAENEPCEVTCLPSHWTRLPDISWELGLLVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SLQNSRLHGSAYLTVQVMGELFIPSVNLVVAENEPCEVTCLPSHWTRLPDISWELGLLVS 220 230 240 250 260 270 190 200 210 220 230 240 pF1KE0 HSSYYFVPEPSDLQSAVSILALTPQSNGTLTCVATWKSLKARKSATVNLTVIRCPQDTGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 HSSYYFVPEPSDLQSAVSILALTPQSNGTLTCVATWKSLKARKSATVNLTVIRCPQDTGG 280 290 300 310 320 330 250 260 270 280 290 300 pF1KE0 GINIPGVLSSLPSLGFSLPTWGKVGLGLAGTMLLTPTCTLTIRCCCCRRRCCGCNCCCRC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GINIPGVLSSLPSLGFSLPTWGKVGLGLAGTMLLTPTCTLTIRCCCCRRRCCGCNCCCRC 340 350 360 370 380 390 310 320 330 340 350 360 pF1KE0 CFCCRRKRGFRIQFQKKSEKEKTNKETETESGNENSGYNSDEQKTTDTASLPPKSCESSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 CFCCRRKRGFRIQFQKKSEKEKTNKETETESGNENSGYNSDEQKTTDTASLPPKSCESSD 400 410 420 430 440 450 370 380 390 400 pF1KE0 PEQRNSSCGPPHQRADQRPPRPASHPQASFNLASPEKVSNTTVV :::::::::::::.. XP_016 PEQRNSSCGPPHQKSSYNCAFRITCTSCPCSTGLAAKHREEFEMLTVVP 460 470 480 490 500 >>XP_011527775 (OMIM: 610638) PREDICTED: immunoglobulin (488 aa) initn: 1963 init1: 1963 opt: 1976 Z-score: 1631.6 bits: 311.1 E(85289): 3.8e-84 Smith-Waterman score: 1976; 88.8% identity (93.8% similar) in 322 aa overlap (34-355:124-439) 10 20 30 40 50 60 pF1KE0 KERSTADTLPDLEEWKSAAGLRWWQTAVVDGSGSGNEVIEGPQNARVLKGSQARFNCTVS :::::::::::::::::::::::::::::: XP_011 RFYFLHQDSSHATNGESSQLLELIFLEKNAGSGSGNEVIEGPQNARVLKGSQARFNCTVS 100 110 120 130 140 150 70 80 90 100 110 120 pF1KE0 QGWKLIMWALSDMVVLSVRPMEPIITNDRFTSQRYDQGGNFTSEMIIHNVEPSDSGNIRC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QGWKLIMWALSDMVVLSVRPMEPIITNDRFTSQRYDQGGNFTSEMIIHNVEPSDSGNIRC 160 170 180 190 200 210 130 140 150 160 170 180 pF1KE0 SLQNSRLHGSAYLTVQVMGELFIPSVNLVVAENEPCEVTCLPSHWTRLPDISWELGLLVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SLQNSRLHGSAYLTVQVMGELFIPSVNLVVAENEPCEVTCLPSHWTRLPDISWELGLLVS 220 230 240 250 260 270 190 200 210 220 230 240 pF1KE0 HSSYYFVPEPSDLQSAVSILALTPQSNGTLTCVATWKSLKARKSATVNLTVIRCPQDTGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 HSSYYFVPEPSDLQSAVSILALTPQSNGTLTCVATWKSLKARKSATVNLTVIRCPQDTGG 280 290 300 310 320 330 250 260 270 280 290 300 pF1KE0 GINIPGVLSSLPSLGFSLPTWGKVGLGLAGTMLLTPTCTLTIRCCCCRRRCCGCNCCCRC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GINIPGVLSSLPSLGFSLPTWGKVGLGLAGTMLLTPTCTLTIRCCCCRRRCCGCNCCCRC 340 350 360 370 380 390 310 320 330 340 350 360 pF1KE0 CFCCRRKRGFRIQFQKKSEKEKTNKETETESGNENSGYNSDEQKTTDTASLPPKSCESSD ::::::::: ...:. . .: ...: .. . . ... : ::: XP_011 CFCCRRKRG---NLKKRRQTKKLRQKVEMKTP---ATIQMNKRPQTPLLSLPNPVNPVIL 400 410 420 430 440 370 380 390 400 pF1KE0 PEQRNSSCGPPHQRADQRPPRPASHPQASFNLASPEKVSNTTVV XP_011 NKETVAVALLTSGLINVHPGQQVIHRLLLIWPVLRRSVIQL 450 460 470 480 >>XP_016883768 (OMIM: 610638) PREDICTED: immunoglobulin (519 aa) initn: 1963 init1: 1963 opt: 1976 Z-score: 1631.3 bits: 311.1 E(85289): 4e-84 Smith-Waterman score: 1976; 88.8% identity (93.8% similar) in 322 aa overlap (34-355:124-439) 10 20 30 40 50 60 pF1KE0 KERSTADTLPDLEEWKSAAGLRWWQTAVVDGSGSGNEVIEGPQNARVLKGSQARFNCTVS :::::::::::::::::::::::::::::: XP_016 RFYFLHQDSSHATNGESSQLLELIFLEKNAGSGSGNEVIEGPQNARVLKGSQARFNCTVS 100 110 120 130 140 150 70 80 90 100 110 120 pF1KE0 QGWKLIMWALSDMVVLSVRPMEPIITNDRFTSQRYDQGGNFTSEMIIHNVEPSDSGNIRC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QGWKLIMWALSDMVVLSVRPMEPIITNDRFTSQRYDQGGNFTSEMIIHNVEPSDSGNIRC 160 170 180 190 200 210 130 140 150 160 170 180 pF1KE0 SLQNSRLHGSAYLTVQVMGELFIPSVNLVVAENEPCEVTCLPSHWTRLPDISWELGLLVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SLQNSRLHGSAYLTVQVMGELFIPSVNLVVAENEPCEVTCLPSHWTRLPDISWELGLLVS 220 230 240 250 260 270 190 200 210 220 230 240 pF1KE0 HSSYYFVPEPSDLQSAVSILALTPQSNGTLTCVATWKSLKARKSATVNLTVIRCPQDTGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 HSSYYFVPEPSDLQSAVSILALTPQSNGTLTCVATWKSLKARKSATVNLTVIRCPQDTGG 280 290 300 310 320 330 250 260 270 280 290 300 pF1KE0 GINIPGVLSSLPSLGFSLPTWGKVGLGLAGTMLLTPTCTLTIRCCCCRRRCCGCNCCCRC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GINIPGVLSSLPSLGFSLPTWGKVGLGLAGTMLLTPTCTLTIRCCCCRRRCCGCNCCCRC 340 350 360 370 380 390 310 320 330 340 350 360 pF1KE0 CFCCRRKRGFRIQFQKKSEKEKTNKETETESGNENSGYNSDEQKTTDTASLPPKSCESSD ::::::::: ...:. . .: ...: .. . . ... : ::: XP_016 CFCCRRKRG---NLKKRRQTKKLRQKVEMKTP---ATIQMNKRPQTPLLSLPNPVNPVIL 400 410 420 430 440 370 380 390 400 pF1KE0 PEQRNSSCGPPHQRADQRPPRPASHPQASFNLASPEKVSNTTVV XP_016 NKETVAVALLTRSLPTTVHLELLVPRVPAPPALLQSTEKSLRCSRWCHDECQVKGLDTKD 450 460 470 480 490 500 407 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Nov 3 17:31:27 2016 done: Thu Nov 3 17:31:29 2016 Total Scan time: 8.610 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]