Result of FASTA (omim) for pF1KE0265
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0265, 130 aa
  1>>>pF1KE0265 130 - 130 aa - 130 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9756+/-0.000328; mu= 12.5317+/- 0.020
 mean_var=57.7312+/-11.606, 0's: 0 Z-trim(115.5): 45  B-trim: 575 in 2/51
 Lambda= 0.168799
 statistics sampled from 25999 (26054) to 25999 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.305), width:  16
 Scan time:  5.010

The best scores are:                                      opt bits E(85289)
NP_003507 (OMIM: 142720) histone H2A type 2-A [Hom ( 130)  826 208.8   2e-54
NP_003505 (OMIM: 602796) histone H2A type 1 [Homo  ( 130)  819 207.1 6.6e-54
NP_003503 (OMIM: 602794) histone H2A type 1-C [Hom ( 130)  819 207.1 6.6e-54
NP_003500 (OMIM: 602787) histone H2A type 1 [Homo  ( 130)  819 207.1 6.6e-54
NP_003502 (OMIM: 602793) histone H2A type 1 [Homo  ( 130)  819 207.1 6.6e-54
NP_066408 (OMIM: 615012) histone H2A type 1 [Homo  ( 130)  819 207.1 6.6e-54
NP_003501 (OMIM: 602788) histone H2A type 1 [Homo  ( 130)  819 207.1 6.6e-54
NP_254280 (OMIM: 615015) histone H2A type 3 [Homo  ( 130)  815 206.1 1.3e-53
NP_066409 (OMIM: 602792) histone H2A type 1-D [Hom ( 130)  815 206.1 1.3e-53
NP_003504 (OMIM: 602795) histone H2A type 1-B/E [H ( 130)  812 205.4 2.2e-53
NP_066390 (OMIM: 602786) histone H2A type 1-B/E [H ( 130)  812 205.4 2.2e-53
NP_542163 (OMIM: 615013) histone H2A type 1-H [Hom ( 128)  805 203.7 6.9e-53
NP_066544 (OMIM: 602791) histone cluster 1, H2aj [ ( 128)  800 202.5 1.6e-52
NP_003508 (OMIM: 602797) histone H2A type 2-C [Hom ( 129)  796 201.5 3.2e-52
NP_778235 (OMIM: 615014) histone H2A type 2-B [Hom ( 130)  783 198.3 2.9e-51
NP_734466 (OMIM: 613499) histone H2A type 1-A [Hom ( 131)  780 197.6 4.8e-51
NP_002096 (OMIM: 601772) histone H2AX [Homo sapien ( 143)  738 187.4 6.2e-48
XP_011542037 (OMIM: 610054) PREDICTED: core histon ( 195)  500 129.5 2.3e-30
XP_011542036 (OMIM: 610054) PREDICTED: core histon ( 196)  500 129.5 2.3e-30
XP_005272192 (OMIM: 610054) PREDICTED: core histon ( 198)  500 129.5 2.3e-30
XP_005272191 (OMIM: 610054) PREDICTED: core histon ( 199)  500 129.5 2.3e-30
XP_016865558 (OMIM: 610054) PREDICTED: core histon ( 222)  500 129.5 2.5e-30
XP_016865557 (OMIM: 610054) PREDICTED: core histon ( 235)  500 129.5 2.6e-30
XP_016865556 (OMIM: 610054) PREDICTED: core histon ( 251)  500 129.6 2.8e-30
XP_011542035 (OMIM: 610054) PREDICTED: core histon ( 252)  500 129.6 2.8e-30
XP_011542034 (OMIM: 610054) PREDICTED: core histon ( 269)  500 129.6   3e-30
XP_011542033 (OMIM: 610054) PREDICTED: core histon ( 270)  500 129.6   3e-30
XP_005272189 (OMIM: 610054) PREDICTED: core histon ( 368)  500 129.6 3.8e-30
NP_613075 (OMIM: 610054) core histone macro-H2A.1  ( 369)  500 129.6 3.9e-30
NP_004884 (OMIM: 610054) core histone macro-H2A.1  ( 371)  500 129.6 3.9e-30
NP_001035248 (OMIM: 610054) core histone macro-H2A ( 371)  500 129.6 3.9e-30
XP_011542032 (OMIM: 610054) PREDICTED: core histon ( 371)  500 129.6 3.9e-30
XP_011542031 (OMIM: 610054) PREDICTED: core histon ( 372)  500 129.6 3.9e-30
NP_613258 (OMIM: 610054) core histone macro-H2A.1  ( 372)  500 129.6 3.9e-30
NP_061119 (OMIM: 616141) core histone macro-H2A.2  ( 372)  490 127.2 2.1e-29
NP_002097 (OMIM: 142763) histone H2A.Z [Homo sapie ( 128)  455 118.4 3.2e-27
NP_542451 (OMIM: 300445) histone H2A-Bbd type 2/3  ( 115)  300 80.7 6.6e-16
XP_011531366 (OMIM: 135300,182530,610733) PREDICTE (1276)  158 46.6 0.00013
XP_005264572 (OMIM: 135300,182530,610733) PREDICTE (1318)  158 46.7 0.00013
XP_011531364 (OMIM: 135300,182530,610733) PREDICTE (1326)  158 46.7 0.00013
NP_005624 (OMIM: 135300,182530,610733) son of seve (1333)  158 46.7 0.00013
NP_008870 (OMIM: 601247,616559) son of sevenless h (1332)  137 41.5  0.0046


>>NP_003507 (OMIM: 142720) histone H2A type 2-A [Homo sa  (130 aa)
 initn: 826 init1: 826 opt: 826  Z-score: 1098.0  bits: 208.8 E(85289): 2e-54
Smith-Waterman score: 826; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KE0 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
               70        80        90       100       110       120

              130
pF1KE0 TESHHKAKGK
       ::::::::::
NP_003 TESHHKAKGK
              130

>>NP_003505 (OMIM: 602796) histone H2A type 1 [Homo sapi  (130 aa)
 initn: 819 init1: 819 opt: 819  Z-score: 1088.8  bits: 207.1 E(85289): 6.6e-54
Smith-Waterman score: 819; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KE0 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
       ::::::::::::::::.::::::::::::::::::::::::::::::::::.::::::::
NP_003 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
               70        80        90       100       110       120

              130
pF1KE0 TESHHKAKGK
       ::::::::::
NP_003 TESHHKAKGK
              130

>>NP_003503 (OMIM: 602794) histone H2A type 1-C [Homo sa  (130 aa)
 initn: 819 init1: 819 opt: 819  Z-score: 1088.8  bits: 207.1 E(85289): 6.6e-54
Smith-Waterman score: 819; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KE0 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
NP_003 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
               70        80        90       100       110       120

              130
pF1KE0 TESHHKAKGK
       ::::::::::
NP_003 TESHHKAKGK
              130

>>NP_003500 (OMIM: 602787) histone H2A type 1 [Homo sapi  (130 aa)
 initn: 819 init1: 819 opt: 819  Z-score: 1088.8  bits: 207.1 E(85289): 6.6e-54
Smith-Waterman score: 819; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KE0 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
       ::::::::::::::::.::::::::::::::::::::::::::::::::::.::::::::
NP_003 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
               70        80        90       100       110       120

              130
pF1KE0 TESHHKAKGK
       ::::::::::
NP_003 TESHHKAKGK
              130

>>NP_003502 (OMIM: 602793) histone H2A type 1 [Homo sapi  (130 aa)
 initn: 819 init1: 819 opt: 819  Z-score: 1088.8  bits: 207.1 E(85289): 6.6e-54
Smith-Waterman score: 819; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KE0 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
       ::::::::::::::::.::::::::::::::::::::::::::::::::::.::::::::
NP_003 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
               70        80        90       100       110       120

              130
pF1KE0 TESHHKAKGK
       ::::::::::
NP_003 TESHHKAKGK
              130

>>NP_066408 (OMIM: 615012) histone H2A type 1 [Homo sapi  (130 aa)
 initn: 819 init1: 819 opt: 819  Z-score: 1088.8  bits: 207.1 E(85289): 6.6e-54
Smith-Waterman score: 819; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KE0 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
       ::::::::::::::::.::::::::::::::::::::::::::::::::::.::::::::
NP_066 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
               70        80        90       100       110       120

              130
pF1KE0 TESHHKAKGK
       ::::::::::
NP_066 TESHHKAKGK
              130

>>NP_003501 (OMIM: 602788) histone H2A type 1 [Homo sapi  (130 aa)
 initn: 819 init1: 819 opt: 819  Z-score: 1088.8  bits: 207.1 E(85289): 6.6e-54
Smith-Waterman score: 819; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KE0 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
       ::::::::::::::::.::::::::::::::::::::::::::::::::::.::::::::
NP_003 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
               70        80        90       100       110       120

              130
pF1KE0 TESHHKAKGK
       ::::::::::
NP_003 TESHHKAKGK
              130

>>NP_254280 (OMIM: 615015) histone H2A type 3 [Homo sapi  (130 aa)
 initn: 815 init1: 815 opt: 815  Z-score: 1083.5  bits: 206.1 E(85289): 1.3e-53
Smith-Waterman score: 815; 97.7% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KE0 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
       ::::::::::::::::::::::::::::::::::::::::.::::::::::.::::::::
NP_254 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_254 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
               70        80        90       100       110       120

              130
pF1KE0 TESHHKAKGK
       ::::::::::
NP_254 TESHHKAKGK
              130

>>NP_066409 (OMIM: 602792) histone H2A type 1-D [Homo sa  (130 aa)
 initn: 815 init1: 815 opt: 815  Z-score: 1083.5  bits: 206.1 E(85289): 1.3e-53
Smith-Waterman score: 815; 97.7% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KE0 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
       ::::::::::::::::.:::::::::::::::::::::::.::::::::::.::::::::
NP_066 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
               70        80        90       100       110       120

              130
pF1KE0 TESHHKAKGK
       ::::::::::
NP_066 TESHHKAKGK
              130

>>NP_003504 (OMIM: 602795) histone H2A type 1-B/E [Homo   (130 aa)
 initn: 812 init1: 812 opt: 812  Z-score: 1079.6  bits: 205.4 E(85289): 2.2e-53
Smith-Waterman score: 812; 96.9% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KE0 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
       ::::::::::::::::.:::::::::::::::::::::::.::::::::::.::::::::
NP_003 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
               70        80        90       100       110       120

              130
pF1KE0 TESHHKAKGK
       ::::::::::
NP_003 TESHHKAKGK
              130




130 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 18:21:07 2016 done: Thu Nov  3 18:21:08 2016
 Total Scan time:  5.010 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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