Result of FASTA (ccds) for pF1KE0238
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0238, 162 aa
  1>>>pF1KE0238 162 - 162 aa - 162 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1508+/-0.000765; mu= 12.1981+/- 0.046
 mean_var=54.1921+/-10.813, 0's: 0 Z-trim(106.7): 19  B-trim: 0 in 0/46
 Lambda= 0.174223
 statistics sampled from 9106 (9118) to 9106 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.28), width:  16
 Scan time:  1.860

The best scores are:                                      opt bits E(32554)
CCDS8046.1 HRASLS2 gene_id:54979|Hs108|chr11       ( 162) 1034 267.6 2.4e-72
CCDS8047.1 PLA2G16 gene_id:11145|Hs108|chr11       ( 162)  728 190.7 3.4e-49
CCDS41662.1 RARRES3 gene_id:5920|Hs108|chr11       ( 164)  527 140.2 5.6e-34
CCDS3303.2 HRASLS gene_id:57110|Hs108|chr3         ( 273)  467 125.2   3e-29
CCDS53646.1 HRASLS5 gene_id:117245|Hs108|chr11     ( 269)  457 122.6 1.7e-28
CCDS8044.1 HRASLS5 gene_id:117245|Hs108|chr11      ( 279)  457 122.6 1.8e-28
CCDS53647.1 HRASLS5 gene_id:117245|Hs108|chr11     ( 253)  351 96.0 1.7e-20


>>CCDS8046.1 HRASLS2 gene_id:54979|Hs108|chr11            (162 aa)
 initn: 1034 init1: 1034 opt: 1034  Z-score: 1412.4  bits: 267.6 E(32554): 2.4e-72
Smith-Waterman score: 1034; 100.0% identity (100.0% similar) in 162 aa overlap (1-162:1-162)

               10        20        30        40        50        60
pF1KE0 MALARPRPRLGDLIEISRFGYAHWAIYVGDGYVVHLAPASEIAGAGAASVLSALTNKAIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 MALARPRPRLGDLIEISRFGYAHWAIYVGDGYVVHLAPASEIAGAGAASVLSALTNKAIV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KKELLSVVAGGDNYRVNNKHDDRYTPLPSNKIVKRAEELVGQELPYSLTSDNCEHFVNHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 KKELLSVVAGGDNYRVNNKHDDRYTPLPSNKIVKRAEELVGQELPYSLTSDNCEHFVNHL
               70        80        90       100       110       120

              130       140       150       160  
pF1KE0 RYGVSRSDQVTGAVTTVGVAAGLLAAASLVGILLARSKRERQ
       ::::::::::::::::::::::::::::::::::::::::::
CCDS80 RYGVSRSDQVTGAVTTVGVAAGLLAAASLVGILLARSKRERQ
              130       140       150       160  

>>CCDS8047.1 PLA2G16 gene_id:11145|Hs108|chr11            (162 aa)
 initn: 729 init1: 709 opt: 728  Z-score: 996.7  bits: 190.7 E(32554): 3.4e-49
Smith-Waterman score: 728; 69.4% identity (89.8% similar) in 157 aa overlap (6-162:6-162)

               10        20        30        40        50        60
pF1KE0 MALARPRPRLGDLIEISRFGYAHWAIYVGDGYVVHLAPASEIAGAGAASVLSALTNKAIV
            :.:. :::::: :  : :::::::::::::::: ::.::::::::.::::.::::
CCDS80 MRAPIPEPKPGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEVAGAGAASVMSALTDKAIV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KKELLSVVAGGDNYRVNNKHDDRYTPLPSNKIVKRAEELVGQELPYSLTSDNCEHFVNHL
       :::::  :::.:.:.:::::::.:.::: .::..:::::::::. :.:::.:::::::.:
CCDS80 KKELLYDVAGSDKYQVNNKHDDKYSPLPCSKIIQRAEELVGQEVLYKLTSENCEHFVNEL
               70        80        90       100       110       120

              130       140       150       160  
pF1KE0 RYGVSRSDQVTGAVTTVGVAAGLLAAASLVGILLARSKRERQ
       ::::.:::::  .. ...::.  ::: ::.:....:.::..:
CCDS80 RYGVARSDQVRDVIIAASVAGMGLAAMSLIGVMFSRNKRQKQ
              130       140       150       160  

>>CCDS41662.1 RARRES3 gene_id:5920|Hs108|chr11            (164 aa)
 initn: 526 init1: 526 opt: 527  Z-score: 723.6  bits: 140.2 E(32554): 5.6e-34
Smith-Waterman score: 527; 55.7% identity (77.9% similar) in 149 aa overlap (1-147:1-149)

               10        20        30        40        50        60
pF1KE0 MALARPRPRLGDLIEISRFGYAHWAIYVGDGYVVHLAPASEIAGAGAASVLSALTNKAIV
       ::  . .:. :::::: :.:: :::.:.:::::.:::: ::  :::..::.:.:.:.: :
CCDS41 MASPHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KKELLSVVAGGDNYRVNNKHDDRYTPLPSNKIVKRAEELVGQELPYSLTSDNCEHFVNHL
       :.: :  :.::  :::::. : .: : : . :.. :.:.:::.. ::..: ::::::..:
CCDS41 KRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL
               70        80        90       100       110       120

              130       140         150       160  
pF1KE0 RYGVSRSDQVTGAVTTVGVAA--GLLAAASLVGILLARSKRERQ
       ::: ::  ::  : . ::::.  :.:..:               
CCDS41 RYGKSRCKQVEKAKVEVGVATALGILVVAGCSFAIRRYQKKATA
              130       140       150       160    

>>CCDS3303.2 HRASLS gene_id:57110|Hs108|chr3              (273 aa)
 initn: 473 init1: 310 opt: 467  Z-score: 638.5  bits: 125.2 E(32554): 3e-29
Smith-Waterman score: 467; 45.3% identity (78.9% similar) in 161 aa overlap (2-161:113-271)

                                             10        20        30
pF1KE0                              MALARP-RPRLGDLIEISRFGYAHWAIYVGD
                                     .:  :  :  :::::. : :: :::.:.::
CCDS33 PRETPGHTQLPPGARRRPRLESEMAFNDCFSLNYPGNPCPGDLIEVFRPGYQHWALYLGD
             90       100       110       120       130       140  

               40        50        60        70        80        90
pF1KE0 GYVVHLAPASEIAGAGAASVLSALTNKAIVKKELLSVVAGGDNYRVNNKHDDRYTPLPSN
       :::...::.. :  :. .:. :....::.:: .::. :.:.:.::.:::.:. : ::: .
CCDS33 GYVINIAPVDGIP-ASFTSAKSVFSSKALVKMQLLKDVVGNDTYRINNKYDETYPPLPVE
            150        160       170       180       190       200 

              100       110       120       130       140       150
pF1KE0 KIVKRAEELVGQELPYSLTSDNCEHFVNHLRYGVSRSDQVTGAVTTVGVAAGLLAAASLV
       .:.::.: ..:::. :.:  .::::::. :::: . :.:.. :..::  ... ... :..
CCDS33 EIIKRSEFVIGQEVAYNLLVNNCEHFVTLLRYGEGVSEQANRAISTVEFVTAAVGVFSFL
             210       220       230       240       250       260 

              160   
pF1KE0 GILLARSKRERQ 
       : :. ...: .  
CCDS33 G-LFPKGQRAKYY
              270   

>>CCDS53646.1 HRASLS5 gene_id:117245|Hs108|chr11          (269 aa)
 initn: 425 init1: 249 opt: 457  Z-score: 625.0  bits: 122.6 E(32554): 1.7e-28
Smith-Waterman score: 457; 52.1% identity (70.5% similar) in 146 aa overlap (2-147:114-257)

                                            10        20        30 
pF1KE0                              MALARPRPRLGDLIEISRFGYAHWAIYVGDG
                                     : ..:::: :::::: :.:: :::::: : 
CCDS53 VVSLETTPSQKADWSSIPKPENEGKLIKQAAEGKPRPRPGDLIEIFRIGYEHWAIYVEDD
            90       100       110       120       130       140   

              40        50        60        70        80        90 
pF1KE0 YVVHLAPASEIAGAGAASVLSALTNKAIVKKELLSVVAGGDNYRVNNKHDDRYTPLPSNK
        :::::: ::   .:  :. : ..:.:.::   :  :  : ...:::: :  : ::: .:
CCDS53 CVVHLAPPSEEFEVG--SITSIFSNRAVVKYSRLEDVLHGCSWKVNNKLDGTYLPLPVDK
           150         160       170       180       190       200 

             100       110       120       130       140       150 
pF1KE0 IVKRAEELVGQELPYSLTSDNCEHFVNHLRYGVSRSDQVTGAVTTVGVAAGLLAAASLVG
       :..:....:.. . :::   ::::::: ::::: ::.::  :.   . ::: . .:    
CCDS53 IIQRTKKMVNKIVQYSLIEGNCEHFVNGLRYGVPRSQQVEHALMEGAKAAGAVISAVVDS
             210       220       230       240       250       260 

             160  
pF1KE0 ILLARSKRERQ
                  
CCDS53 IKPKPITA   
                  

>>CCDS8044.1 HRASLS5 gene_id:117245|Hs108|chr11           (279 aa)
 initn: 425 init1: 249 opt: 457  Z-score: 624.7  bits: 122.6 E(32554): 1.8e-28
Smith-Waterman score: 457; 52.1% identity (70.5% similar) in 146 aa overlap (2-147:124-267)

                                            10        20        30 
pF1KE0                              MALARPRPRLGDLIEISRFGYAHWAIYVGDG
                                     : ..:::: :::::: :.:: :::::: : 
CCDS80 VVSLETTPSQKADWSSIPKPENEGKLIKQAAEGKPRPRPGDLIEIFRIGYEHWAIYVEDD
           100       110       120       130       140       150   

              40        50        60        70        80        90 
pF1KE0 YVVHLAPASEIAGAGAASVLSALTNKAIVKKELLSVVAGGDNYRVNNKHDDRYTPLPSNK
        :::::: ::   .:  :. : ..:.:.::   :  :  : ...:::: :  : ::: .:
CCDS80 CVVHLAPPSEEFEVG--SITSIFSNRAVVKYSRLEDVLHGCSWKVNNKLDGTYLPLPVDK
           160         170       180       190       200       210 

             100       110       120       130       140       150 
pF1KE0 IVKRAEELVGQELPYSLTSDNCEHFVNHLRYGVSRSDQVTGAVTTVGVAAGLLAAASLVG
       :..:....:.. . :::   ::::::: ::::: ::.::  :.   . ::: . .:    
CCDS80 IIQRTKKMVNKIVQYSLIEGNCEHFVNGLRYGVPRSQQVEHALMEGAKAAGAVISAVVDS
             220       230       240       250       260       270 

             160  
pF1KE0 ILLARSKRERQ
                  
CCDS80 IKPKPITA   
                  

>>CCDS53647.1 HRASLS5 gene_id:117245|Hs108|chr11          (253 aa)
 initn: 353 init1: 190 opt: 351  Z-score: 481.4  bits: 96.0 E(32554): 1.7e-20
Smith-Waterman score: 351; 50.9% identity (70.5% similar) in 112 aa overlap (2-113:124-233)

                                            10        20        30 
pF1KE0                              MALARPRPRLGDLIEISRFGYAHWAIYVGDG
                                     : ..:::: :::::: :.:: :::::: : 
CCDS53 VVSLETTPSQKADWSSIPKPENEGKLIKQAAEGKPRPRPGDLIEIFRIGYEHWAIYVEDD
           100       110       120       130       140       150   

              40        50        60        70        80        90 
pF1KE0 YVVHLAPASEIAGAGAASVLSALTNKAIVKKELLSVVAGGDNYRVNNKHDDRYTPLPSNK
        :::::: ::   .:  :. : ..:.:.::   :  :  : ...:::: :  : ::: .:
CCDS53 CVVHLAPPSEEFEVG--SITSIFSNRAVVKYSRLEDVLHGCSWKVNNKLDGTYLPLPVDK
           160         170       180       190       200       210 

             100       110       120       130       140       150 
pF1KE0 IVKRAEELVGQELPYSLTSDNCEHFVNHLRYGVSRSDQVTGAVTTVGVAAGLLAAASLVG
       :..:....:.. . :::   ::                                      
CCDS53 IIQRTKKMVNKIVQYSLIEGNCRARPDGRSEGCWSSYFSCSG                  
             220       230       240       250                     




162 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 19:53:32 2016 done: Thu Nov  3 19:53:33 2016
 Total Scan time:  1.860 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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