GENSCAN 1.0	Date run:  3-Nov-116	Time: 20:48:44

Sequence gi568815581r:34260562_34463161 : 202600 bp : 43.40% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.00 Prom +   9624   9663   40                              -1.46
 1.01 Init +   9730   9805   76  0  1   79  110   113 0.972  11.87
 1.02 Intr +  10585  10702  118  2  1  109   48    63 0.981   3.92
 1.03 Term +  11136  11241  106  0  1  120   47   102 0.980   7.18
 1.04 PlyA +  11715  11720    6                               1.05

 2.00 Prom +  21500  21539   40                              -4.46
 2.01 Init +  25248  25323   76  2  1   94  115   102 0.771  12.86
 2.02 Intr +  26535  26646  112  1  1   44   95    57 0.761   1.44
 2.03 Term +  27024  27129  106  0  1   64   36   145 0.958   4.78
 2.04 PlyA +  27267  27272    6                              -0.45

 3.05 PlyA -  27296  27291    6                               1.05
 3.04 Term -  30263  30098  166  1  1   78   42    83 0.137   0.09
 3.03 Intr -  30830  30750   81  1  0   80   81    40 0.160   1.25
 3.02 Intr -  34719  32550 2170  1  1   43   53   710 0.050  50.34
 3.01 Init -  38047  37999   49  1  1   62   53    44 0.048  -0.59
 3.00 Prom -  40530  40491   40                              -4.36

 4.00 Prom +  43060  43099   40                              -3.46
 4.01 Init +  58941  59016   76  2  1   84  110   109 0.977  12.00
 4.02 Intr +  59708  59825  118  0  1   77   76    63 0.931   3.52
 4.03 Term +  60241  60346  106  1  1  118   52    36 0.846   0.88
 4.04 PlyA +  61808  61813    6                               1.05

 5.03 PlyA -  62907  62902    6                               1.05
 5.02 Term -  64720  64286  435  1  0   68   42   118 0.382   0.49
 5.01 Init -  76621  76217  405  1  0   45    8   286 0.163  12.89
 5.00 Prom -  77833  77794   40                              -1.46

 6.00 Prom +  85981  86020   40                              -2.36
 6.01 Init +  95966  96041   76  1  1   69  111    98 0.956   9.81
 6.02 Intr +  96914  97028  115  0  1   73   34    86 0.569   1.21
 6.03 Term +  97465  97570  106  1  1  107   43    80 0.921   3.28
 6.04 PlyA +  98025  98030    6                              -3.74

 7.04 PlyA -  98037  98032    6                               1.05
 7.03 Term - 100100  99998  103  1  1  122   53    26 0.484   0.25
 7.02 Intr - 101335 101224  112  2  1   96  101   -19 0.687  -0.36
 7.01 Init - 102600 102525   76  0  1   83   73   127 0.941  10.29
 7.00 Prom - 105299 105260   40                              -4.46

 8.00 Prom + 105879 105918   40                              -7.66
 8.01 Init + 106787 106853   67  1  1   46  103    67 0.493   5.23
 8.02 Intr + 115137 115257  121  1  1   33   91    96 0.127   3.95
 8.03 Intr + 125150 125325  176  2  2   38   37   101 0.045  -0.42
 8.04 Intr + 128476 128624  149  2  2   49   94    91 0.075   5.75
 8.05 Term + 128790 128846   57  2  0   72   40    90 0.714   0.29
 8.06 PlyA + 132003 132008    6                               1.05

 9.10 PlyA - 132720 132715    6                               1.05
 9.09 Term - 140465 140173  293  0  2   71   43   166 0.407   5.91
 9.08 Intr - 147647 147597   51  0  0   42   95    52 0.074   0.18
 9.07 Intr - 162617 162489  129  0  0   86   70    14 0.333   0.07
 9.06 Intr - 164184 164062  123  1  0   87  109    19 0.585   4.46
 9.05 Intr - 174440 174278  163  2  1   88   49    25 0.013  -1.85
 9.04 Intr - 188322 188254   69  0  0   77  111    67 0.622   7.28
 9.03 Intr - 189049 188892  158  2  2   65   60    18 0.394  -3.57
 9.02 Intr - 193678 193391  288  2  0   94   92    73 0.554   5.52
 9.01 Init - 196830 196791   40  0  1   97   39    70 0.696   3.35

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  22264  22392  129  0  0   78   99   105 0.831  10.75
S.002 Term +  22752  22856  105  2  0   38   50    83 0.868  -2.09


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581r:34260562_34463161|GENSCAN_predicted_peptide_1|99_aa
MKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLESYRRTTSSHCP
REAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL

>gi568815581r:34260562_34463161|GENSCAN_predicted_CDS_1|300_bp
atgaaagcctctgcagcacttctgtgtctgctgctcacagcagctgctttcagcccccag
gggcttgctcagccagttgggattaatacttcaactacctgctgctacagatttatcaat
aagaaaatccctaagcagaggctggagagctacagaaggaccaccagtagccactgtccc
cgggaagctgtaatcttcaagaccaaactggacaaggagatctgtgctgaccccacacag
aagtgggtccaggactttatgaagcacctggacaagaaaacccaaactccaaagctttga

>gi568815581r:34260562_34463161|GENSCAN_predicted_peptide_2|97_aa
MKVSAALLWLLLIAAAFSPQGLAGPASVPTTCCFNLANRKIPLQRLESYRRITSGKCPQK
AVIFKTKLAKDICADPKKKWVQDSMKYLDQKSPTPKP

>gi568815581r:34260562_34463161|GENSCAN_predicted_CDS_2|294_bp
atgaaggtctccgcagcacttctgtggctgctgctcatagcagctgccttcagcccccag
gggctcgctgggccagcttctgtcccaaccacctgctgctttaacctggccaataggaag
ataccccttcagcgactagagagctacaggagaatcaccagtggcaaatgtccccagaaa
gctgtgatcttcaagaccaaactggccaaggatatctgtgccgaccccaagaagaagtgg
gtgcaggattccatgaagtatctggaccaaaaatctccaactccaaagccataa

>gi568815581r:34260562_34463161|GENSCAN_predicted_peptide_3|821_aa
MTIALQINSGMALKGRKIQTTIGEYYKHLYANKLENLEEMDKFLDTYTLPRLNQEEVESL
NRPITGAEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSF
DEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPG
MQGWFNIHKSINVIQHINRAKDKNHMIISIDAEKAFDKIQQPFMLKTLNKLGIDGTYLKI
IRAIYDKPIANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQ
LGKEEVKLSLFADDMIIYLENPIVSAQNLLKLISNFSKVSEYKINVQKSQAFLYTNNRQT
ESQIMSELPFTIASKRIKYLGIQLTRDMKDLFKENYKPLLKEIKEDTNKWKNIPCSWVGR
INIVKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRARIAKSILSQKNKAGG
ITLPDFKLYYKATVTKTAWYWYQNRDIDQWNRTEPSEITPHTYNYLIFDKPEKNKQWGKD
SLFNKWCWENWLAICRKLKLDPFLTPYTKINSRWIKDLNVRRKTIKTLEENLGITIQDIG
MGKDFMSKTPKAMATKDKIDKWDLIKIKSFCTAKETTVRVNRQPTKWEKIFATYSSDKGL
ISRIYNELQQIYKKKTNNPIKKWVKDMNRHFSKEDIYAAKKHMKKCSSSLAIREMQIKTT
MRYHLTPVRMAIIKKSGNNRLAGQETNRQGEEEVTIRARVMGPGHQKSKVLLPQLLEVLA
ANASQRNFLYEARRQLKTAALPRVVSSSRSILQPGLVQMGV

>gi568815581r:34260562_34463161|GENSCAN_predicted_CDS_3|2466_bp
atgacaattgctctacagatcaactcagggatggccttgaaagggagaaaaatacaaact
accatcggagaatactacaaacacctctacgcaaataaactagaaaatctagaagaaatg
gataaattcctcgacacatacactctcccaagactaaaccaggaagaagttgaatctctg
aatagaccaataacaggagctgaaattgtggcaataatcaatagtttaccaaccaaaaag
agtccaggaccagatggattcacagccgaattctaccagaggtacaaggaggaactggta
ccattccttctgaaactattccaatcaatagaaaaagagggaatcctccctaactcattt
gatgaggccagcatcattctgataccaaagccgggcagagacacaaccaaaaaagagaat
tttagaccaatatccttgatgaacattgatgcaaaaatcctcaataaaatactggcaaac
cgaatccagcagcacatcaaaaagcttatccaccatgatcaagtgggcttcatccctggg
atgcaaggctggttcaatatacacaaatcaataaatgtaatccagcatataaacagagcc
aaagacaaaaaccacatgattatctcaatagatgcagaaaaagcctttgacaaaattcaa
caacccttcatgctaaaaactctcaataaattaggtattgatgggacgtatctcaaaata
ataagagctatctatgacaaacccatagccaatatcatactgaatgggcaaaaactggaa
gcattccctttgaaaactggcacaagacagggatgccctctctcaccactcctattcaac
atagtgttggaagttctggccagggcaatcaggcaggagaaggaaataaagggtattcaa
ttaggaaaagaggaagtcaaattgtccctgtttgcagacgacatgattatatatctagaa
aaccccattgtctctgcccaaaatctccttaagctgataagcaacttcagcaaagtctca
gaatacaaaatcaatgtgcaaaaatcacaagcattcttatacaccaacaacagacaaaca
gagagccaaatcatgagtgaactcccattcacaattgcttcaaagagaataaaataccta
ggaatccaacttacaagggacatgaaggacctcttcaaggagaactacaaaccactgctc
aaagaaataaaagaggatacaaacaaatggaagaacattccatgctcatgggtaggaaga
atcaatatcgtgaaaatggccatactgcccaaggtaatttacagattcaatgccatcccc
atcaagctaccaatgactttcttcacagaattggaaaaaactactttaaagttcatatgg
aaccaaaaaagagcccgcatcgccaagtcaatcctaagccaaaagaacaaagctggaggc
atcacactacctgacttcaaactatactacaaggctacagtaaccaaaacagcatggtac
tggtaccaaaacagagatatagatcaatggaacagaacagagccctcagaaataacgccg
catacctacaactatctgatctttgacaaacctgagaaaaacaagcaatggggaaaggat
tccctatttaataaatggtgctgggaaaactggctagccatatgtagaaagctgaaactg
gatcccttccttacaccttatacaaaaatcaattcaagatggattaaagatttaaacgtt
agacgtaaaaccataaaaaccctagaagaaaacctaggcattaccattcaggacataggc
atgggcaaggacttcatgtccaaaacaccaaaagcaatggcaacaaaagacaaaattgac
aaatgggatctaattaaaataaagagcttctgcacagcaaaagaaactaccgtcagagtg
aacaggcaacctacaaaatgggagaaaattttcgcaacctactcatctgacaaagggcta
atatccagaatctacaatgaactccaacaaatttacaagaaaaaaacaaacaaccccatc
aaaaagtgggtgaaggacatgaacagacacttctcaaaagaagacatttatgcagccaaa
aaacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccact
atgagataccatctcacaccagttagaatggcaatcattaaaaagtcaggaaacaacaga
cttgcaggccaagaaactaacaggcaaggagaggaagaggtcactatccgggccagggta
atgggccctggtcatcagaagtctaaagtgcttcttccccagctgctagaagtgttggca
gccaatgcttctcagcggaatttcctctatgaggcccgccgtcagctaaaaacagctgcc
ttgcccagagttgtgtcctcttccaggagcatcctgcagccagggctggttcagatgggg
gtataa

>gi568815581r:34260562_34463161|GENSCAN_predicted_peptide_4|99_aa
MKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLESYTRITNIQCP
KEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP

>gi568815581r:34260562_34463161|GENSCAN_predicted_CDS_4|300_bp
atgaaggtttctgcagcgcttctgtgcctgctgctcatggcagccactttcagccctcag
ggacttgctcagccagattcagtttccattccaatcacctgctgctttaacgtgatcaat
aggaaaattcctatccagaggctggagagctacacaagaatcaccaacatccaatgtccc
aaggaagctgtgatcttcaagaccaaacggggcaaggaggtctgtgctgaccccaaggag
agatgggtcagggattccatgaagcatctggaccaaatatttcaaaatctgaagccatga

>gi568815581r:34260562_34463161|GENSCAN_predicted_peptide_5|279_aa
MCKFLDTYTLPRLNQEDVECLNRPITSSEIEAVIKSLPTKKSPRTNGFTAKFYQMYKEEL
VTFLLKLFQTIEKGGFLPNSFYEASIILIPKCVKDTPKEENLRAISLMNVNVKILHKIPA
NQIQQHIKKLIHHDQPTQMRRNQKNSSGNMTKQGSSTPPKDHTSSPAMDPNQDEISELPE
KEFIRSIIKLIKEAPEKGEVLLKEIKKKIQHMNGKISSEIDSINKSQSQLLEMKDTVREM
QNVLESLSSRIKQAEERTSELEDKAFELNQSNKGEEKRI

>gi568815581r:34260562_34463161|GENSCAN_predicted_CDS_5|840_bp
atgtgtaaattcctggacacatacaccctcccaagactaaaccaggaagatgttgaatgc
ctgaatagaccaataacaagttctgaaattgaggcagtaattaagagcctaccaaccaaa
aaaagcccaagaacaaatggattcacagccaaattctaccagatgtacaaggaggagctg
gtaacattccttctgaaactattccaaacaatagaaaaagggggattcctccctaactca
ttttatgaggccagcatcatccttataccaaaatgcgtcaaagacacaccaaaagaagaa
aatttaagggcaatatccctgatgaatgtcaacgtgaaaatcctccataaaataccggca
aaccaaatccagcagcacatcaaaaagcttatccaccacgatcaacctacccaaatgaga
aggaaccagaaaaacagttctggtaatatgacaaaacaaggctcttcaacacccccaaaa
gatcacactagctcaccagcaatggatccaaaccaagatgaaatctctgaattgccagaa
aaagaattcataaggtcaattattaagctaatcaaggaggcaccagagaaaggtgaagtc
ctacttaaagaaataaaaaaaaagatacagcatatgaatggaaaaatctccagtgaaata
gatagcataaataaatcacaatcacaacttctggaaatgaaggacacagttagagaaatg
caaaatgtgctggaaagtctcagcagtagaatcaaacaagcagaagaaagaacttcagag
cttgaagacaaggcttttgaattaaaccaatccaacaaaggtgaagaaaaaagaatttaa

>gi568815581r:34260562_34463161|GENSCAN_predicted_peptide_6|98_aa
MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTSRCPQ
KAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT

>gi568815581r:34260562_34463161|GENSCAN_predicted_CDS_6|297_bp
atgaaagtctctgcagtgcttctgtgcctgctgctcatgacagcagctttcaacccccag
ggacttgctcagccagatgcactcaacgtcccatctacttgctgcttcacatttagcagt
aagaagatctccttgcagaggctgaagagctatgtgatcaccaccagcaggtgtccccag
aaggctgtcatcttcagaaccaaactgggcaaggagatctgtgctgacccaaaggagaag
tgggtccagaattatatgaaacacctgggccggaaagctcacaccctgaagacttga

>gi568815581r:34260562_34463161|GENSCAN_predicted_peptide_7|96_aa
MQIITTALVCLLLAGMWPEDVDSKSMQVPFSRCCFSFAEQEIPLRAILCYRNTSSICSNE
GLIFKLKRGKEACALDTVGWVQRHRKMLRHCPSKRK

>gi568815581r:34260562_34463161|GENSCAN_predicted_CDS_7|291_bp
atgcagatcatcaccacagccctggtgtgcttgctgctagctgggatgtggccggaagat
gtggacagcaagagcatgcaggtacccttctccagatgttgcttctcatttgcggagcaa
gagattcccctgagggcaatcctgtgttacagaaataccagctccatctgctccaatgag
ggcttaatattcaagctgaagagaggcaaagaggcctgcgccttggacacagttggatgg
gttcagaggcacagaaaaatgctgaggcactgcccgtcaaaaagaaaatga

>gi568815581r:34260562_34463161|GENSCAN_predicted_peptide_8|189_aa
MYQTLGIPQRDKTNMGPGIGNCAVWRTDFQDNKNQSRGNSKKPGKGGQWLRLARGQRKVD
GSSSLSAEGAQKPRPPIGKGAFLKSLKETMKAHNLKGCQKSLQNSALTSAKASHTIAEYV
QWTDPLVASDRERGRSMGEDADTQKDPNLYRKVKVDISPAPGSEPDMHGAKETVILAKLL
CGQDENEEE

>gi568815581r:34260562_34463161|GENSCAN_predicted_CDS_8|570_bp
atgtaccagacactggggataccgcagcgggacaagacaaacatgggccctggtattggg
aattgtgctgtatggagaacagattttcaggacaataagaaccagtcaagaggcaatagc
aagaagccaggcaagggagggcaatggctccggctggcccggggacagcgcaaagtggat
ggatccagctccttgtccgcagaaggtgctcagaagccacggcctcctataggaaaggga
gcctttcttaagtccctgaaagagacaatgaaggctcataatcttaagggttgccaaaag
tctttgcaaaattctgccttgaccagcgctaaagcctcacacaccattgctgagtacgtg
cagtggactgatccactggtggccagtgacagggagaggggaaggagcatgggagaagat
gcagatacccagaaagatccaaacctctaccgcaaagtcaaggtagacatttccccagcc
ccggggagtgagcctgatatgcatggagcaaaggagacagtgattctcgccaagctcctg
tgtgggcaggatgagaacgaggaggaataa

>gi568815581r:34260562_34463161|GENSCAN_predicted_peptide_9|437_aa
MGATDHMLIDDRICNCLELSIPIAPSSPNLLLCLGGSRSSSAECGTWKTGSNPAPSFLRP
GMKVQRQRASSPESELAQQVMGSTRHKGPGSCMCLHGNGQPAQNLCALTEPFIEHLLYAR
SLNNLHSGETDTVISCKSVSVSYIQLHIKCCGHTEDFIGALGMHGGSGRGPDPNLLEPFA
TQMNNVVVTQEVHGIRTTLVLNVESLRCQLVTLGQFQTSLLLSVCSVDDGNICPAGAPVS
HLCRIRGVAALGLGAWWDEQQRECGLRCRKGLGSGATEKPVQGLECQSWPLTLLHVQFWL
CGVCEVQGDMTRVTVCVSSPPSKVLAIKKLSTAVERDEASGPGTGKSLLLQKRTRFAMFI
SHIFSGTIMFLYSKFPLTSVIRYRSQTTEFVATVTSPPQMCDGQHVEGDLCASSGSPCCR
GAVRGNLEILVSLPIFP

>gi568815581r:34260562_34463161|GENSCAN_predicted_CDS_9|1314_bp
atgggggccaccgaccacatgctgattgatgacagaatctgcaactgcctggagctgagt
ataccaattgctccttcttccccaaatctcttgctttgtctaggggggtctagaagcagc
tcagcagaatgtggaacctggaagacaggctctaatccagccccctcgtttttgagacca
ggaatgaaggttcagaggcagagggcaagttccccagagtcagagcttgcacagcaggtc
atgggcagcaccaggcacaagggtccaggcagctgcatgtgcctccatggcaatgggcag
cctgctcagaacctctgtgcactcacagaacccttcattgagcatctgctgtatgctagg
tccttaaataacttacattctggggagacagacacagtaattagttgtaaaagtgtatca
gtgtcatacatacagttacatatcaaatgctgtggacatacagaagactttattggtgct
ttggggatgcatgggggtagtggaagaggtcctgaccccaacttgctggagccttttgct
acccagatgaacaacgtggtggtgacacaggaagtgcatgggataaggacaaccctggtt
ttgaatgtggagtctctcaggtgtcagctggtgactttgggccaattccagacctctctg
ctcctctctgtatgcagtgtggatgatggtaacatctgccctgcaggagcccctgtgtct
cacttgtgtagaattcgaggggttgcagctttgggtttgggggcttggtgggacgagcag
cagagggaatgtggcctgcggtgtaggaagggcttaggctcaggtgctactgagaagcca
gtgcaggggctggagtgtcagagctggcccctcaccctactgcatgtgcagttctggtta
tgtggggtctgtgaggtccagggagacatgaccagagtgacggtgtgtgtcagctccccc
ccctccaaagtacttgccattaagaagctgagtacagctgtggagagggatgaggcatca
ggtcctggcacaggcaagagcctgctcctgcagaagaggacccgctttgccatgtttatt
tctcatatcttctctggcacgatcatgttcctttattcaaaatttccactcacatcagtc
atccgttatcgatcacagacgacggagtttgtggccacagtgacatctcccccacagatg
tgtgatggccagcatgtggaaggggacctttgtgctagctcaggctctccgtgttgcagg
ggagcagtcagaggaaacttggaaattcttgtctctttgcccatctttccctag