Result of FASTA (ccds) for pF1KE0171
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0171, 222 aa
  1>>>pF1KE0171 222 - 222 aa - 222 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3400+/-0.000724; mu= 13.3257+/- 0.044
 mean_var=59.2742+/-11.775, 0's: 0 Z-trim(108.3): 16  B-trim: 24 in 2/49
 Lambda= 0.166587
 statistics sampled from 10137 (10145) to 10137 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.698), E-opt: 0.2 (0.312), width:  16
 Scan time:  2.120

The best scores are:                                      opt bits E(32554)
CCDS5265.1 SOD2 gene_id:6648|Hs108|chr6            ( 222) 1536 377.1 4.8e-105
CCDS83141.1 SOD2 gene_id:6648|Hs108|chr6           ( 176) 1223 301.9 1.7e-82
CCDS83143.1 SOD2 gene_id:6648|Hs108|chr6           ( 162)  785 196.6 7.8e-51
CCDS34564.1 SOD2 gene_id:6648|Hs108|chr6           ( 183)  765 191.8 2.4e-49
CCDS83142.1 SOD2 gene_id:6648|Hs108|chr6           ( 140)  513 131.2 3.3e-31


>>CCDS5265.1 SOD2 gene_id:6648|Hs108|chr6                 (222 aa)
 initn: 1536 init1: 1536 opt: 1536  Z-score: 1999.4  bits: 377.1 E(32554): 4.8e-105
Smith-Waterman score: 1536; 100.0% identity (100.0% similar) in 222 aa overlap (1-222:1-222)

               10        20        30        40        50        60
pF1KE0 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
              130       140       150       160       170       180

              190       200       210       220  
pF1KE0 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
       ::::::::::::::::::::::::::::::::::::::::::
CCDS52 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
              190       200       210       220  

>>CCDS83141.1 SOD2 gene_id:6648|Hs108|chr6                (176 aa)
 initn: 1223 init1: 1223 opt: 1223  Z-score: 1594.4  bits: 301.9 E(32554): 1.7e-82
Smith-Waterman score: 1223; 100.0% identity (100.0% similar) in 176 aa overlap (47-222:1-176)

         20        30        40        50        60        70      
pF1KE0 LGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKG
                                     ::::::::::::::::::::::::::::::
CCDS83                               MQLHHSKHHAAYVNNLNVTEEKYQEALAKG
                                             10        20        30

         80        90       100       110       120       130      
pF1KE0 DVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 DVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLT
               40        50        60        70        80        90

        140       150       160       170       180       190      
pF1KE0 AASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 AASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNV
              100       110       120       130       140       150

        200       210       220  
pF1KE0 RPDYLKAIWNVINWENVTERYMACKK
       ::::::::::::::::::::::::::
CCDS83 RPDYLKAIWNVINWENVTERYMACKK
              160       170      

>>CCDS83143.1 SOD2 gene_id:6648|Hs108|chr6                (162 aa)
 initn: 785 init1: 785 opt: 785  Z-score: 1026.1  bits: 196.6 E(32554): 7.8e-51
Smith-Waterman score: 990; 73.0% identity (73.0% similar) in 222 aa overlap (1-222:1-162)

               10        20        30        40        50        60
pF1KE0 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::     
CCDS83 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKG-----
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KE0 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
                                                              :::::
CCDS83 -------------------------------------------------------LIPLL
                                                                120

              190       200       210       220  
pF1KE0 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
       ::::::::::::::::::::::::::::::::::::::::::
CCDS83 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
              130       140       150       160  

>>CCDS34564.1 SOD2 gene_id:6648|Hs108|chr6                (183 aa)
 initn: 765 init1: 765 opt: 765  Z-score: 999.3  bits: 191.8 E(32554): 2.4e-49
Smith-Waterman score: 1173; 82.4% identity (82.4% similar) in 222 aa overlap (1-222:1-183)

               10        20        30        40        50        60
pF1KE0 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
       ::::::::::::::::                                       :::::
CCDS34 NLNVTEEKYQEALAKG---------------------------------------ELLEA
               70                                               80 

              130       140       150       160       170       180
pF1KE0 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
              90       100       110       120       130       140 

              190       200       210       220  
pF1KE0 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
       ::::::::::::::::::::::::::::::::::::::::::
CCDS34 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
             150       160       170       180   

>>CCDS83142.1 SOD2 gene_id:6648|Hs108|chr6                (140 aa)
 initn: 513 init1: 513 opt: 513  Z-score: 673.8  bits: 131.2 E(32554): 3.3e-31
Smith-Waterman score: 513; 95.1% identity (96.3% similar) in 81 aa overlap (1-81:1-81)

               10        20        30        40        50        60
pF1KE0 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
       ::::::::::::::::   :.                                       
CCDS83 NLNVTEEKYQEALAKGRFQAERREAVPGRGDPREPGPIRTGLSVEENSLRICTGSEFSRH
               70        80        90       100       110       120




222 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:00:00 2016 done: Thu Nov  3 23:00:00 2016
 Total Scan time:  2.120 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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