Result of FASTA (ccds) for pF1KE0079
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0079, 616 aa
  1>>>pF1KE0079 616 - 616 aa - 616 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4479+/-0.000836; mu= 10.8891+/- 0.050
 mean_var=165.7703+/-31.942, 0's: 0 Z-trim(113.5): 38  B-trim: 22 in 1/51
 Lambda= 0.099614
 statistics sampled from 14108 (14143) to 14108 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.434), width:  16
 Scan time:  3.130

The best scores are:                                      opt bits E(32554)
CCDS11980.1 TNFRSF11A gene_id:8792|Hs108|chr18     ( 616) 4380 641.6  9e-184
CCDS74227.1 TNFRSF11A gene_id:8792|Hs108|chr18     ( 263) 1888 283.1 3.1e-76
CCDS74228.1 TNFRSF11A gene_id:8792|Hs108|chr18     ( 337) 1763 265.3 9.5e-71
CCDS59324.1 TNFRSF11A gene_id:8792|Hs108|chr18     ( 299) 1502 227.7 1.7e-59
CCDS13393.1 CD40 gene_id:958|Hs108|chr20           ( 277)  548 90.6   3e-18
CCDS13394.1 CD40 gene_id:958|Hs108|chr20           ( 203)  483 81.1 1.5e-15
CCDS59233.1 LTBR gene_id:4055|Hs108|chr12          ( 416)  405 70.2 6.2e-12
CCDS8544.1 LTBR gene_id:4055|Hs108|chr12           ( 435)  405 70.2 6.4e-12
CCDS145.1 TNFRSF1B gene_id:7133|Hs108|chr1         ( 461)  397 69.1 1.5e-11
CCDS6326.1 TNFRSF11B gene_id:4982|Hs108|chr8       ( 401)  383 67.0 5.4e-11


>>CCDS11980.1 TNFRSF11A gene_id:8792|Hs108|chr18          (616 aa)
 initn: 4380 init1: 4380 opt: 4380  Z-score: 3412.8  bits: 641.6 E(32554): 9e-184
Smith-Waterman score: 4380; 100.0% identity (100.0% similar) in 616 aa overlap (1-616:1-616)

               10        20        30        40        50        60
pF1KE0 MAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEKHYEHLGRCCNKCEPGKYMSSKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEKHYEHLGRCCNKCEPGKYMSSKC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGYHW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGYHW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCTFLGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCTFLGK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 RVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLFASVALVAAIIFGVCYRKKGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLFASVALVAAIIFGVCYRKKGK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 ALTANLWHWINEACGRLSGDKESSGDSCVSTHTANFGQQGACEGVLLLTLEEKTFPEDMC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ALTANLWHWINEACGRLSGDKESSGDSCVSTHTANFGQQGACEGVLLLTLEEKTFPEDMC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 YPDQGGVCQGTCVGGGPYAQGEDARMLSLVSKTEIEEDSFRQMPTEDEYMDRPSQPTDQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YPDQGGVCQGTCVGGGPYAQGEDARMLSLVSKTEIEEDSFRQMPTEDEYMDRPSQPTDQL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 LFLTEPGSKSTPPFSEPLEVGENDSLSQCFTGTQSTVGSESCNCTEPLCRTDWTPMSSEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LFLTEPGSKSTPPFSEPLEVGENDSLSQCFTGTQSTVGSESCNCTEPLCRTDWTPMSSEN
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 YLQKEVDSGHCPHWAASPSPNWADVCTGCRNPPGEDCEPLVGSPKRGPLPQCAYGMGLPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YLQKEVDSGHCPHWAASPSPNWADVCTGCRNPPGEDCEPLVGSPKRGPLPQCAYGMGLPP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 EEEASRTEARDQPEDGADGRLPSSARAGAGSGSSPGGQSPASGNVTGNSNSTFISSGQVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EEEASRTEARDQPEDGADGRLPSSARAGAGSGSSPGGQSPASGNVTGNSNSTFISSGQVM
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 NFKGDIIVVYVSQTSQEGAAAAAEPMGRPVQEETLARRDSFAGNGPRFPDPCGGPEGLRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NFKGDIIVVYVSQTSQEGAAAAAEPMGRPVQEETLARRDSFAGNGPRFPDPCGGPEGLRE
              550       560       570       580       590       600

              610      
pF1KE0 PEKASRPVQEQGGAKA
       ::::::::::::::::
CCDS11 PEKASRPVQEQGGAKA
              610      

>>CCDS74227.1 TNFRSF11A gene_id:8792|Hs108|chr18          (263 aa)
 initn: 1888 init1: 1888 opt: 1888  Z-score: 1482.2  bits: 283.1 E(32554): 3.1e-76
Smith-Waterman score: 1888; 100.0% identity (100.0% similar) in 262 aa overlap (1-262:1-262)

               10        20        30        40        50        60
pF1KE0 MAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEKHYEHLGRCCNKCEPGKYMSSKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEKHYEHLGRCCNKCEPGKYMSSKC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGYHW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 TTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGYHW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCTFLGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCTFLGK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 RVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLFASVALVAAIIFGVCYRKKGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLFASVALVAAIIFGVCYRKKGK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 ALTANLWHWINEACGRLSGDKESSGDSCVSTHTANFGQQGACEGVLLLTLEEKTFPEDMC
       ::::::::::::::::::::::                                      
CCDS74 ALTANLWHWINEACGRLSGDKEM                                     
              250       260                                        

>>CCDS74228.1 TNFRSF11A gene_id:8792|Hs108|chr18          (337 aa)
 initn: 1750 init1: 1750 opt: 1763  Z-score: 1383.7  bits: 265.3 E(32554): 9.5e-71
Smith-Waterman score: 1804; 54.7% identity (54.7% similar) in 616 aa overlap (1-616:1-337)

               10        20        30        40        50        60
pF1KE0 MAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEKHYEHLGRCCNKCEPGKYMSSKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEKHYEHLGRCCNKCEPGKYMSSKC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGYHW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 TTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGYHW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCTFLGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCTFLGK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 RVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLFASVALVAAIIFGVCYRKKGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLFASVALVAAIIFGVCYRKKGK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 ALTANLWHWINEACGRLSGDKESSGDSCVSTHTANFGQQGACEGVLLLTLEEKTFPEDMC
       :::                                                         
CCDS74 ALT---------------------------------------------------------
                                                                   

              310       320       330       340       350       360
pF1KE0 YPDQGGVCQGTCVGGGPYAQGEDARMLSLVSKTEIEEDSFRQMPTEDEYMDRPSQPTDQL
                                                                   
CCDS74 ------------------------------------------------------------
                                                                   

              370       380       390       400       410       420
pF1KE0 LFLTEPGSKSTPPFSEPLEVGENDSLSQCFTGTQSTVGSESCNCTEPLCRTDWTPMSSEN
                                                                   
CCDS74 ------------------------------------------------------------
                                                                   

              430       440       450       460       470       480
pF1KE0 YLQKEVDSGHCPHWAASPSPNWADVCTGCRNPPGEDCEPLVGSPKRGPLPQCAYGMGLPP
                                                                   
CCDS74 ------------------------------------------------------------
                                                                   

              490       500       510       520       530       540
pF1KE0 EEEASRTEARDQPEDGADGRLPSSARAGAGSGSSPGGQSPASGNVTGNSNSTFISSGQVM
                                                 ::::::::::::::::::
CCDS74 ------------------------------------------GNVTGNSNSTFISSGQVM
                                                     250       260 

              550       560       570       580       590       600
pF1KE0 NFKGDIIVVYVSQTSQEGAAAAAEPMGRPVQEETLARRDSFAGNGPRFPDPCGGPEGLRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 NFKGDIIVVYVSQTSQEGAAAAAEPMGRPVQEETLARRDSFAGNGPRFPDPCGGPEGLRE
             270       280       290       300       310       320 

              610      
pF1KE0 PEKASRPVQEQGGAKA
       ::::::::::::::::
CCDS74 PEKASRPVQEQGGAKA
             330       

>>CCDS59324.1 TNFRSF11A gene_id:8792|Hs108|chr18          (299 aa)
 initn: 1502 init1: 1502 opt: 1502  Z-score: 1181.7  bits: 227.7 E(32554): 1.7e-59
Smith-Waterman score: 1502; 100.0% identity (100.0% similar) in 205 aa overlap (1-205:1-205)

               10        20        30        40        50        60
pF1KE0 MAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEKHYEHLGRCCNKCEPGKYMSSKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEKHYEHLGRCCNKCEPGKYMSSKC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGYHW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 TTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGYHW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCTFLGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCTFLGK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 RVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLFASVALVAAIIFGVCYRKKGK
       :::::::::::::::::::::::::                                   
CCDS59 RVEHHGTEKSDAVCSSSLPARKPPNGNVTGNSNSTFISSGQVMNFKGDIIVVYVSQTSQE
              190       200       210       220       230       240

>--
 initn: 630 init1: 630 opt: 630  Z-score: 504.4  bits: 102.4 E(32554): 9e-22
Smith-Waterman score: 630; 100.0% identity (100.0% similar) in 94 aa overlap (523-616:206-299)

            500       510       520       530       540       550  
pF1KE0 PEDGADGRLPSSARAGAGSGSSPGGQSPASGNVTGNSNSTFISSGQVMNFKGDIIVVYVS
                                     ::::::::::::::::::::::::::::::
CCDS59 TFLGKRVEHHGTEKSDAVCSSSLPARKPPNGNVTGNSNSTFISSGQVMNFKGDIIVVYVS
         180       190       200       210       220       230     

            560       570       580       590       600       610  
pF1KE0 QTSQEGAAAAAEPMGRPVQEETLARRDSFAGNGPRFPDPCGGPEGLREPEKASRPVQEQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 QTSQEGAAAAAEPMGRPVQEETLARRDSFAGNGPRFPDPCGGPEGLREPEKASRPVQEQG
         240       250       260       270       280       290     

           
pF1KE0 GAKA
       ::::
CCDS59 GAKA
           

>>CCDS13393.1 CD40 gene_id:958|Hs108|chr20                (277 aa)
 initn: 525 init1: 287 opt: 548  Z-score: 441.1  bits: 90.6 E(32554): 3e-18
Smith-Waterman score: 548; 37.7% identity (63.6% similar) in 231 aa overlap (14-241:4-226)

               10        20        30          40        50        
pF1KE0 MAPRARRRRPLFALLLLCALLARLQVALQIAPP--CTSEKHYEHLGRCCNKCEPGKYMSS
                    : : :.: . : .:..  ::  :  ::.:   ..::. :.::. . :
CCDS13           MVRLPLQCVLWGCLLTAVHPEPPTACR-EKQYLINSQCCSLCQPGQKLVS
                         10        20         30        40         

       60        70        80        90       100       110        
pF1KE0 KCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGY
        ::  ... ::::: .:.::.::.: .:  :: :: . .: .   :.: :   :.:  :.
CCDS13 DCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGW
      50        60        70        80        90       100         

       120       130       140       150       160       170       
pF1KE0 H-WSQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCTF
       :  :. :: :  .  :.::.:...     .::.:.:: .:.::.. :. .::.:::.:  
CCDS13 HCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCET
     110       120       130       140       150       160         

       180       190       200       210       220       230       
pF1KE0 LGKRVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLFASVALVAAIIFGVCYRK
           :.. ::.:.:.::. .   :       : .: .:. .::: . :: ..:  :  . 
CCDS13 KDLVVQQAGTNKTDVVCGPQDRLRA-----LVVIP-IIFGILFA-ILLVLVFIKKVAKKP
     170       180       190             200        210       220  

       240       250       260       270       280       290       
pF1KE0 KGKALTANLWHWINEACGRLSGDKESSGDSCVSTHTANFGQQGACEGVLLLTLEEKTFPE
        .::                                                        
CCDS13 TNKAPHPKQEPQEINFPDDLPGSNTAAPVQETLHGCQPVTQEDGKESRISVQERQ     
            230       240       250       260       270            

>>CCDS13394.1 CD40 gene_id:958|Hs108|chr20                (203 aa)
 initn: 491 init1: 287 opt: 483  Z-score: 392.4  bits: 81.1 E(32554): 1.5e-15
Smith-Waterman score: 483; 40.5% identity (66.9% similar) in 163 aa overlap (14-173:4-165)

               10        20        30          40        50        
pF1KE0 MAPRARRRRPLFALLLLCALLARLQVALQIAPP--CTSEKHYEHLGRCCNKCEPGKYMSS
                    : : :.: . : .:..  ::  :  ::.:   ..::. :.::. . :
CCDS13           MVRLPLQCVLWGCLLTAVHPEPPTACR-EKQYLINSQCCSLCQPGQKLVS
                         10        20         30        40         

       60        70        80        90       100       110        
pF1KE0 KCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGY
        ::  ... ::::: .:.::.::.: .:  :: :: . .: .   :.: :   :.:  :.
CCDS13 DCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGW
      50        60        70        80        90       100         

       120       130       140       150       160       170       
pF1KE0 H-WSQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCTF
       :  :. :: :  .  :.::.:...     .::.:.:: .:.::.. :. .::.:::    
CCDS13 HCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTRSPG
     110       120       130       140       150       160         

       180       190       200       210       220       230       
pF1KE0 LGKRVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLFASVALVAAIIFGVCYRK
                                                                   
CCDS13 SAESPGGDPHHLRDPVCHPLGAGLYQKGGQEANQ                          
     170       180       190       200                             

>>CCDS59233.1 LTBR gene_id:4055|Hs108|chr12               (416 aa)
 initn: 314 init1: 182 opt: 405  Z-score: 327.7  bits: 70.2 E(32554): 6.2e-12
Smith-Waterman score: 406; 30.3% identity (55.5% similar) in 238 aa overlap (24-246:6-239)

               10        20        30                  40          
pF1KE0 MAPRARRRRPLFALLLLCALLARLQVALQI-APPCTSE---------KHYEHLGR-CCNK
                              ...: :. .:: .::         ..::   : ::..
CCDS59                   MEATGISLASQLKVPPYASENQTCRDQEKEYYEPQHRICCSR
                                 10        20        30        40  

      50        60        70        80        90       100         
pF1KE0 CEPGKYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTP
       : :: :.:.::.   :.::  :. . : . ::    : : . ::   .:  ..  .:   
CCDS59 CPPGTYVSAKCSRIRDTVCATCAENSYNEHWNYLTICQLCRPCDPVMGLEEIAPCTSKRK
             50        60        70        80        90       100  

     110          120       130       140        150       160     
pF1KE0 RRCACTAGYH---WSQDCECCRRNTECAPGLGAQHPLQLNK-DTVCKPCLAGYFSDAFSS
        .: :  :.    :. .:  :.  ..: ::  :.   ...: .. : :: ::.:... : 
CCDS59 TQCRCQPGMFCAAWALECTHCELLSDCPPGTEAELKDEVGKGNNHCVPCKAGHFQNTSSP
            110       120       130       140       150       160  

         170       180       190       200       210       220     
pF1KE0 TDKCRPWTNCTFLGKRVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLFASVAL
       . .:.: : :   :      :: .::..:.. :    ::.   ..:  .. .::  .  :
CCDS59 SARCQPHTRCENQGLVEAAPGTAQSDTTCKNPLEPL-PPEMSGTML--MLAVLLPLAFFL
            170       180       190        200         210         

         230       240       250       260       270       280     
pF1KE0 VAAIIFGVCYRKKGKALTANLWHWINEACGRLSGDKESSGDSCVSTHTANFGQQGACEGV
       . : .:. :  :.  .:  .:                                       
CCDS59 LLATVFS-CIWKSHPSLCRKLGSLLKRRPQGEGPNPVAGSWEPPKAHPYFPDLVQPLLPI
     220        230       240       250       260       270        

>>CCDS8544.1 LTBR gene_id:4055|Hs108|chr12                (435 aa)
 initn: 314 init1: 182 opt: 405  Z-score: 327.5  bits: 70.2 E(32554): 6.4e-12
Smith-Waterman score: 416; 31.5% identity (54.6% similar) in 251 aa overlap (10-246:16-258)

                     10        20        30                 40     
pF1KE0       MAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSE---------KHYEHLGR
                      ::  .: : .:::  :   : .:: .::         ..::   :
CCDS85 MLLPWATSAPGLAWGPL--VLGLFGLLAASQP--QAVPPYASENQTCRDQEKEYYEPQHR
               10          20        30          40        50      

           50        60        70        80        90       100    
pF1KE0 -CCNKCEPGKYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAG
        ::..: :: :.:.::.   :.::  :. . : . ::    : : . ::   .:  ..  
CCDS85 ICCSRCPPGTYVSAKCSRIRDTVCATCAENSYNEHWNYLTICQLCRPCDPVMGLEEIAPC
         60        70        80        90       100       110      

          110          120       130       140        150       160
pF1KE0 NSTTPRRCACTAGYH---WSQDCECCRRNTECAPGLGAQHPLQLNK-DTVCKPCLAGYFS
       .:    .: :  :.    :. .:  :.  ..: ::  :.   ...: .. : :: ::.:.
CCDS85 TSKRKTQCRCQPGMFCAAWALECTHCELLSDCPPGTEAELKDEVGKGNNHCVPCKAGHFQ
        120       130       140       150       160       170      

              170       180       190       200       210       220
pF1KE0 DAFSSTDKCRPWTNCTFLGKRVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLF
       .. : . .:.: : :   :      :: .::..:.. :    ::.   ..:  .. .:: 
CCDS85 NTSSPSARCQPHTRCENQGLVEAAPGTAQSDTTCKNPLEPL-PPEMSGTML--MLAVLLP
        180       190       200       210        220         230   

              230       240       250       260       270       280
pF1KE0 ASVALVAAIIFGVCYRKKGKALTANLWHWINEACGRLSGDKESSGDSCVSTHTANFGQQG
        .  :. : .:. :  :.  .:  .:                                  
CCDS85 LAFFLLLATVFS-CIWKSHPSLCRKLGSLLKRRPQGEGPNPVAGSWEPPKAHPYFPDLVQ
           240        250       260       270       280       290  

>>CCDS145.1 TNFRSF1B gene_id:7133|Hs108|chr1              (461 aa)
 initn: 337 init1: 161 opt: 397  Z-score: 320.9  bits: 69.1 E(32554): 1.5e-11
Smith-Waterman score: 397; 33.5% identity (57.1% similar) in 203 aa overlap (17-212:23-219)

                     10        20        30        40         50   
pF1KE0       MAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEKHYEHLGR-CCNKCEPG
                             : : .:    : . .  :  ...:.. .. ::.:: ::
CCDS14 MAPVAVWAALAVGLELWAAAHALPAQVAFTPYAPEPGSTCRLREYYDQTAQMCCSKCSPG
               10        20        30        40        50        60

            60        70        80         90       100       110  
pF1KE0 KYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCL-LHKVCDTGKALVAVVAGNSTTPRRC
       .. .  :: :::.::  :  . : . ::   .::   . :.. .  : . : .    : :
CCDS14 QHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSRCSSDQ--VETQACTREQNRIC
               70        80        90       100         110        

                120       130       140       150       160        
pF1KE0 ACTAGYH----WSQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDK
       .:  :..     .. :. :    .: ::.:. .:   ..:.:::::  : ::.. :::: 
CCDS14 TCRPGWYCALSKQEGCRLCAPLRKCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTDI
      120       130       140       150       160       170        

      170       180       190       200        210       220       
pF1KE0 CRPWTNCTFLGKRVEHHGTEKSDAVCSSSLPARK-PPNEPHVYLPGLIILLLFASVALVA
       :::   :.     :   :. . ::::.:. :.:.  :.  :.  :               
CCDS14 CRPHQICNV----VAIPGNASMDAVCTSTSPTRSMAPGAVHLPQPVSTRSQHTQPTPEPS
      180           190       200       210       220       230    

       230       240       250       260       270       280       
pF1KE0 AIIFGVCYRKKGKALTANLWHWINEACGRLSGDKESSGDSCVSTHTANFGQQGACEGVLL
                                                                   
CCDS14 TAPSTSFLLPMGPSPPAEGSTGDFALPVGLIVGVTALGLLIIGVVNCVIMTQVKKKPLCL
          240       250       260       270       280       290    

>>CCDS6326.1 TNFRSF11B gene_id:4982|Hs108|chr8            (401 aa)
 initn: 319 init1: 169 opt: 383  Z-score: 310.8  bits: 67.0 E(32554): 5.4e-11
Smith-Waterman score: 383; 34.6% identity (55.5% similar) in 191 aa overlap (16-197:4-188)

               10        20        30        40              50    
pF1KE0 MAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEKHYEHLGR------CCNKCEPGK
                      :::  :. :..... .   :   .: :  .       :.:: :: 
CCDS63             MNNLLCCALVFLDISIKWTTQETFPPKYLHYDEETSHQLLCDKCPPGT
                           10        20        30        40        

           60        70         80         90       100        110 
pF1KE0 YMSSKCTTTSDSVCLPCGPDEYL-DSWNEEDKCLL-HKVCDTGKALVAVVAG-NSTTPRR
       :....::.   .:: :: ::.:  :::.  :.::    ::   : :  :    : :  : 
CCDS63 YLKQHCTAKWKTVCAPC-PDHYYTDSWHTSDECLYCSPVC---KELQYVKQECNRTHNRV
       50        60         70        80           90       100    

             120       130       140       150       160       170 
pF1KE0 CACTAGYHWSQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRP
       : :  : .   . : : ..  : ::.:. .    ...:::: :  :.::.  ::   :: 
CCDS63 CECKEGRYL--EIEFCLKHRSCPPGFGVVQAGTPERNTVCKRCPDGFFSNETSSKAPCRK
          110         120       130       140       150       160  

             180       190       200       210       220       230 
pF1KE0 WTNCTFLGKRVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLFASVALVAAIIF
        :::. .:  . ..:.   : .::..                                  
CCDS63 HTNCSVFGLLLTQKGNATHDNICSGNSESTQKCGIDVTLCEEAFFRFAVPTKFTPNWLSV
            170       180       190       200       210       220  




616 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:59:08 2016 done: Fri Nov  4 03:59:09 2016
 Total Scan time:  3.130 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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