Result of FASTA (ccds) for pF1KE0073
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0073, 1320 aa
  1>>>pF1KE0073 1320 - 1320 aa - 1320 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.9202+/-0.00119; mu= -6.9542+/- 0.072
 mean_var=603.8565+/-124.939, 0's: 0 Z-trim(117.2): 97  B-trim: 503 in 1/55
 Lambda= 0.052192
 statistics sampled from 17803 (17896) to 17803 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.55), width:  16
 Scan time:  7.180

The best scores are:                                      opt bits E(32554)
CCDS42998.1 MN1 gene_id:4330|Hs108|chr22           (1320) 9395 723.4 9.9e-208


>>CCDS42998.1 MN1 gene_id:4330|Hs108|chr22                (1320 aa)
 initn: 9395 init1: 9395 opt: 9395  Z-score: 3842.9  bits: 723.4 E(32554): 9.9e-208
Smith-Waterman score: 9395; 100.0% identity (100.0% similar) in 1320 aa overlap (1-1320:1-1320)

               10        20        30        40        50        60
pF1KE0 MFGLDQFEPQVNSRNAGQGERNFNETGLSMNTHFKAPAFHTGGPPGPVDPAMSALGEPPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MFGLDQFEPQVNSRNAGQGERNFNETGLSMNTHFKAPAFHTGGPPGPVDPAMSALGEPPI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LGMNMEPYGFHARGHSELHAGGLQAQPVHGFFGGQQPHHGHPGSHHPHQHHPHFGGNFGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LGMNMEPYGFHARGHSELHAGGLQAQPVHGFFGGQQPHHGHPGSHHPHQHHPHFGGNFGG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 PDPGASCLHGGRLLGYGGAAGGLGSQPPFAEGYEHMAESQGPESFGPQRPGNLPDFHSSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PDPGASCLHGGRLLGYGGAAGGLGSQPPFAEGYEHMAESQGPESFGPQRPGNLPDFHSSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 ASSHAVPAPCLPLDQSPNRAASFHGLPSSSGSDSHSLEPRRVTNQGAVDSLEYNYPGEAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ASSHAVPAPCLPLDQSPNRAASFHGLPSSSGSDSHSLEPRRVTNQGAVDSLEYNYPGEAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 SGHFDMFSPSDSEGQLPHYAAGRQVPGGAFPGASAMPRAAGMVGLSKMHAQPPQQQPQQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SGHFDMFSPSDSEGQLPHYAAGRQVPGGAFPGASAMPRAAGMVGLSKMHAQPPQQQPQQQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 QQPQQQQQQHGVFFERFSGARKMPVGLEPSVGSRHPLMQPPQQAPPPPQQQPPQQPPQQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QQPQQQQQQHGVFFERFSGARKMPVGLEPSVGSRHPLMQPPQQAPPPPQQQPPQQPPQQQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 PPPPPGLLVRQNSCPPALPRPQQGEAGTPSGGLQDGGPMLPSQHAQFEYPIHRLENRSMH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PPPPPGLLVRQNSCPPALPRPQQGEAGTPSGGLQDGGPMLPSQHAQFEYPIHRLENRSMH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 PYSEPVFSMQHPPPQQAPNQRLQHFDAPPYMNVAKRPRFDFPGSAGVDRCASWNGSMHNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PYSEPVFSMQHPPPQQAPNQRLQHFDAPPYMNVAKRPRFDFPGSAGVDRCASWNGSMHNG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 ALDNHLSPSAYPGLPGEFTPPVPDSFPSGPPLQHPAPDHQSLQQQQQQQQQQQQQQQQQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ALDNHLSPSAYPGLPGEFTPPVPDSFPSGPPLQHPAPDHQSLQQQQQQQQQQQQQQQQQQ
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 QQQQQQQQQQRQNAALMIKQMASRNQQQRLRQPNLAQLGHPGDVGQGGLVHGGPVGGLAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QQQQQQQQQQRQNAALMIKQMASRNQQQRLRQPNLAQLGHPGDVGQGGLVHGGPVGGLAQ
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE0 PNFEREGGSTGAGRLGTFEQQAPHLAQESAWFSGPHPPPGDLLPRRMGGSGLPADCGPHD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PNFEREGGSTGAGRLGTFEQQAPHLAQESAWFSGPHPPPGDLLPRRMGGSGLPADCGPHD
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE0 PSLAPPPPPGGSGVLFRGPLQEPMRMPGEGHVPALPSPGLQFGGSLGGLGQLQSPGAGVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PSLAPPPPPGGSGVLFRGPLQEPMRMPGEGHVPALPSPGLQFGGSLGGLGQLQSPGAGVG
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE0 LPSAASERRPPPPDFATSALGGQPGFPFGAAGRQSTPHSGPGVNSPPSAGGGGGSSGGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LPSAASERRPPPPDFATSALGGQPGFPFGAAGRQSTPHSGPGVNSPPSAGGGGGSSGGGG
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE0 GGGAYPPQPDFQPSQRTSASKLGALSLGSFNKPSSKDNLFGQSCLAALSTACQNMIASLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GGGAYPPQPDFQPSQRTSASKLGALSLGSFNKPSSKDNLFGQSCLAALSTACQNMIASLG
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KE0 APNLNVTFNKKNPPEGKRKLSQNETDGAAVAGNPGSDYFPGGTAPGAPGPGGPSGTSSSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 APNLNVTFNKKNPPEGKRKLSQNETDGAAVAGNPGSDYFPGGTAPGAPGPGGPSGTSSSG
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KE0 SKASGPPNPPAQGDGTSLSPNYTLESTSGNDGKPVSGGGGRGRGRRKRDSGHVSPGTFFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SKASGPPNPPAQGDGTSLSPNYTLESTSGNDGKPVSGGGGRGRGRRKRDSGHVSPGTFFD
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KE0 KYSAAPDSGGAPGVSPGQQQASGAAVGGSSAGETRGAPTPHEKALTSPSWGKGAELLLGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KYSAAPDSGGAPGVSPGQQQASGAAVGGSSAGETRGAPTPHEKALTSPSWGKGAELLLGD
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KE0 QPDLIGSLDGGAKSDSSSPNVGEFASDEVSTSYANEDEVSSSSDNPQALVKASRSPLVTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QPDLIGSLDGGAKSDSSSPNVGEFASDEVSTSYANEDEVSSSSDNPQALVKASRSPLVTG
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KE0 SPKLPPRGVGAGEHGPKAPPPALGLGIMSNSTSTPDSYGGGGGPGHPGTPGLEQVRTPTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SPKLPPRGVGAGEHGPKAPPPALGLGIMSNSTSTPDSYGGGGGPGHPGTPGLEQVRTPTS
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KE0 SSGAPPPDEIHPLEILQAQIQLQRQQFSISEDQPLGLKGGKKGECAVGASGAQNGDSELG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SSGAPPPDEIHPLEILQAQIQLQRQQFSISEDQPLGLKGGKKGECAVGASGAQNGDSELG
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KE0 SCCSEAVKSAMSTIDLDSLMAEHSAAWYMPADKALVDSADDDKTLAPWEKAKPQNPNSKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SCCSEAVKSAMSTIDLDSLMAEHSAAWYMPADKALVDSADDDKTLAPWEKAKPQNPNSKE
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KE0 AHDLPANKASASQPGSHLQCLSVHCTDDVGDAKARASVPTWRSLHSDISNRFGTFVAALT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AHDLPANKASASQPGSHLQCLSVHCTDDVGDAKARASVPTWRSLHSDISNRFGTFVAALT
             1270      1280      1290      1300      1310      1320




1320 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 04:17:54 2016 done: Fri Nov  4 04:17:55 2016
 Total Scan time:  7.180 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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