Result of FASTA (ccds) for pF1KB6989
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6989, 219 aa
  1>>>pF1KB6989 219 - 219 aa - 219 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4003+/-0.000808; mu= 12.5915+/- 0.048
 mean_var=60.5303+/-12.279, 0's: 0 Z-trim(106.6): 32  B-trim: 0 in 0/49
 Lambda= 0.164850
 statistics sampled from 9022 (9049) to 9022 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.278), width:  16
 Scan time:  1.390

The best scores are:                                      opt bits E(32554)
CCDS4759.1 PSMB9 gene_id:5698|Hs108|chr6           ( 219) 1434 349.4 1.1e-96
CCDS11056.1 PSMB6 gene_id:5694|Hs108|chr17         ( 239)  879 217.4 6.2e-57
CCDS73944.1 PSMB6 gene_id:5694|Hs108|chr17         ( 213)  722 180.0 9.8e-46
CCDS4756.1 PSMB8 gene_id:5696|Hs108|chr6           ( 272)  337 88.5 4.4e-18
CCDS4757.1 PSMB8 gene_id:5696|Hs108|chr6           ( 276)  337 88.5 4.5e-18
CCDS10853.1 PSMB10 gene_id:5699|Hs108|chr16        ( 273)  335 88.0 6.2e-18
CCDS6855.1 PSMB7 gene_id:5695|Hs108|chr9           ( 277)  316 83.5 1.4e-16
CCDS9584.1 PSMB5 gene_id:5693|Hs108|chr14          ( 263)  313 82.8 2.3e-16
CCDS41923.1 PSMB11 gene_id:122706|Hs108|chr14      ( 300)  295 78.5 4.9e-15


>>CCDS4759.1 PSMB9 gene_id:5698|Hs108|chr6                (219 aa)
 initn: 1434 init1: 1434 opt: 1434  Z-score: 1849.5  bits: 349.4 E(32554): 1.1e-96
Smith-Waterman score: 1434; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:1-219)

               10        20        30        40        50        60
pF1KB6 MLRAGAPTGDLPRAGEVHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MLRAGAPTGDLPRAGEVHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 IYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 IYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 AGWDQREGGQVYGTLGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 AGWDQREGGQVYGTLGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIA
              130       140       150       160       170       180

              190       200       210         
pF1KB6 LAMSRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE
       :::::::::::::::::::::::::::::::::::::::
CCDS47 LAMSRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE
              190       200       210         

>>CCDS11056.1 PSMB6 gene_id:5694|Hs108|chr17              (239 aa)
 initn: 877 init1: 518 opt: 879  Z-score: 1135.6  bits: 217.4 E(32554): 6.2e-57
Smith-Waterman score: 879; 62.4% identity (89.1% similar) in 202 aa overlap (16-216:30-231)

                             10        20        30        40      
pF1KB6               MLRAGAPTGDLPRAGEVHTGTTIMAVEFDGGVVMGSDSRVSAGEAV
                                    :: ::::::::.::::::.:.:::...:  .
CCDS11 MAATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSYI
               10        20        30        40        50        60

         50        60        70        80        90       100      
pF1KB6 VNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNI
       .::: :::.:.:.::.:  ::::::.::::: ..::: .:.:::.::::: .::.. ...
CCDS11 ANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEM
               70        80        90       100       110       120

        110       120       130        140       150       160     
pF1KB6 SYKYREDLSAHLMVAGWDQREGGQVYGT-LGGMLTRQPFAIGGSGSTFIYGYVDAAYKPG
        :.::::: : ...:::: .::::::.. .:::..:: ::::::::..:::::::.:. :
CCDS11 CYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREG
              130       140       150       160       170       180

         170       180       190       200       210              
pF1KB6 MSPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE     
       :. ::: .::..:.:::: ::::::::: :..:. .::...:.::...:::        
CCDS11 MTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVATLPPA
              190       200       210       220       230         

>>CCDS73944.1 PSMB6 gene_id:5694|Hs108|chr17              (213 aa)
 initn: 717 init1: 518 opt: 722  Z-score: 934.6  bits: 180.0 E(32554): 9.8e-46
Smith-Waterman score: 722; 62.8% identity (88.4% similar) in 164 aa overlap (16-178:30-193)

                             10        20        30        40      
pF1KB6               MLRAGAPTGDLPRAGEVHTGTTIMAVEFDGGVVMGSDSRVSAGEAV
                                    :: ::::::::.::::::.:.:::...:  .
CCDS73 MAATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSYI
               10        20        30        40        50        60

         50        60        70        80        90       100      
pF1KB6 VNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNI
       .::: :::.:.:.::.:  ::::::.::::: ..::: .:.:::.::::: .::.. ...
CCDS73 ANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEM
               70        80        90       100       110       120

        110       120       130        140       150       160     
pF1KB6 SYKYREDLSAHLMVAGWDQREGGQVYGT-LGGMLTRQPFAIGGSGSTFIYGYVDAAYKPG
        :.::::: : ...:::: .::::::.. .:::..:: ::::::::..:::::::.:. :
CCDS73 CYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREG
              130       140       150       160       170       180

         170       180       190       200       210         
pF1KB6 MSPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE
       :. ::: .::..:                                         
CCDS73 MTKEECLQFTANAFFFYPQLSLWPWSGMAPVEE                     
              190       200       210                        

>>CCDS4756.1 PSMB8 gene_id:5696|Hs108|chr6                (272 aa)
 initn: 330 init1: 197 opt: 337  Z-score: 438.0  bits: 88.5 E(32554): 4.4e-18
Smith-Waterman score: 337; 33.8% identity (58.1% similar) in 198 aa overlap (9-202:55-251)

                                     10          20        30      
pF1KB6                       MLRAGAPTGDLPRAGEVHT--GTTIMAVEFDGGVVMGS
                                     ::  :  ...   ::: .: .:. ::. . 
CCDS47 AAPLDDTTLPTPVSSGCPGLEPTEFFQSLGGDGERNVQIEMAHGTTTLAFKFQHGVIAAV
           30        40        50        60        70        80    

         40        50        60        70        80        90      
pF1KB6 DSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLV
       :::.:::  .     .:.  ..  .  ..:: ::: :    . : . .:. ..  :   :
CCDS47 DSRASAGSYISALRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISV
           90       100       110       120       130       140    

        100       110        120       130        140       150    
pF1KB6 LAAANVVRNISYKYR-EDLSAHLMVAGWDQREGGQVY-GTLGGMLTRQPFAIGGSGSTFI
        ::.... :.  .::   ::   :. :::..  :  :    :  :. . :. : ::.:. 
CCDS47 SAASKLLSNMMCQYRGMGLSMGSMICGWDKKGPGLYYVDEHGTRLSGNMFSTG-SGNTYA
          150       160       170       180       190        200   

          160       170       180       190       200       210    
pF1KB6 YGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAGVDHRVILGNELP
       :: .:..:.:..::::   .   ::: :  ::. ::::. .  .   :            
CCDS47 YGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDSYSGGVVNMYHMKEDGWVKVESTDVSDL
           210       220       230       240       250       260   

                
pF1KB6 KFYDE    
                
CCDS47 LHQYREANQ
           270  

>>CCDS4757.1 PSMB8 gene_id:5696|Hs108|chr6                (276 aa)
 initn: 354 init1: 197 opt: 337  Z-score: 437.9  bits: 88.5 E(32554): 4.5e-18
Smith-Waterman score: 337; 33.8% identity (58.1% similar) in 198 aa overlap (9-202:59-255)

                                     10          20        30      
pF1KB6                       MLRAGAPTGDLPRAGEVHT--GTTIMAVEFDGGVVMGS
                                     ::  :  ...   ::: .: .:. ::. . 
CCDS47 DPGHYSFSMRSPELALPRGMQPTEFFQSLGGDGERNVQIEMAHGTTTLAFKFQHGVIAAV
       30        40        50        60        70        80        

         40        50        60        70        80        90      
pF1KB6 DSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLV
       :::.:::  .     .:.  ..  .  ..:: ::: :    . : . .:. ..  :   :
CCDS47 DSRASAGSYISALRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISV
       90       100       110       120       130       140        

        100       110        120       130        140       150    
pF1KB6 LAAANVVRNISYKYR-EDLSAHLMVAGWDQREGGQVY-GTLGGMLTRQPFAIGGSGSTFI
        ::.... :.  .::   ::   :. :::..  :  :    :  :. . :. : ::.:. 
CCDS47 SAASKLLSNMMCQYRGMGLSMGSMICGWDKKGPGLYYVDEHGTRLSGNMFSTG-SGNTYA
      150       160       170       180       190       200        

          160       170       180       190       200       210    
pF1KB6 YGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAGVDHRVILGNELP
       :: .:..:.:..::::   .   ::: :  ::. ::::. .  .   :            
CCDS47 YGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDSYSGGVVNMYHMKEDGWVKVESTDVSDL
       210       220       230       240       250       260       

                
pF1KB6 KFYDE    
                
CCDS47 LHQYREANQ
       270      

>>CCDS10853.1 PSMB10 gene_id:5699|Hs108|chr16             (273 aa)
 initn: 306 init1: 306 opt: 335  Z-score: 435.4  bits: 88.0 E(32554): 6.2e-18
Smith-Waterman score: 335; 30.5% identity (64.5% similar) in 197 aa overlap (7-202:28-221)

                                    10        20        30         
pF1KB6                      MLRAGAPTGDLPRAGEVHTGTTIMAVEFDGGVVMGSDSR
                                  :   .:.: .  ::::: .. :. ::..:.:.:
CCDS10 MLKPALEPRGGFSFENCQRNASLERVLPGLKVPHARK--TGTTIAGLVFQDGVILGADTR
               10        20        30          40        50        

      40        50        60        70        80        90         
pF1KB6 VSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAA
       ..   .:...  .:.  .  .:::  .: ::::. .. :.: ..:::..   . : : ..
CCDS10 ATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVATV
       60        70        80        90       100       110        

     100       110       120       130        140       150        
pF1KB6 ANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGTLG-GMLTRQPFAIGGSGSTFIYGYV
       . ..:.  ..:.  ..: :.:.: :   : :.::.   :  .: ::.  :::.    . .
CCDS10 TRILRQTLFRYQGHVGASLIVGGVDLT-GPQLYGVHPHGSYSRLPFTALGSGQDAALAVL
      120       130       140        150       160       170       

      160       170       180       190       200       210        
pF1KB6 DAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYD
       .  ..:.:. :  . . ..:.. ..  : .::: .   .:: .:                
CCDS10 EDRFQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVDACVITKTGAKLLRTLSSPTEPVKR
       180       190       200       210       220       230       

                                           
pF1KB6 E                                   
                                           
CCDS10 SGRYHFVPGTTAVLTQTVKPLTLELVEETVQAMEVE
       240       250       260       270   

>>CCDS6855.1 PSMB7 gene_id:5695|Hs108|chr9                (277 aa)
 initn: 326 init1: 302 opt: 316  Z-score: 410.9  bits: 83.5 E(32554): 1.4e-16
Smith-Waterman score: 316; 29.2% identity (64.6% similar) in 195 aa overlap (11-204:36-227)

                                   10        20        30        40
pF1KB6                     MLRAGAPTGDLPRAGEVHTGTTIMAVEFDGGVVMGSDSRV
                                     ::.. .  ::::: .: .  :.:.:.:.:.
CCDS68 VYAPPVGGFSFDNCRRNAVLEADFAKRGYKLPKVRK--TGTTIAGVVYKDGIVLGADTRA
          10        20        30        40          50        60   

               50        60        70        80        90       100
pF1KB6 SAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAA
       . : .:...  .:.  .   :::  .:.:::.. .... . .::::..   . : :..: 
CCDS68 TEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN
            70        80        90       100       110       120   

              110       120       130        140       150         
pF1KB6 NVVRNISYKYREDLSAHLMVAGWDQREGGQVYGTLG-GMLTRQPFAIGGSGSTFIYGYVD
        ..... ..:.  ..: :...: :   : ..:.    :   . :..  ::::   ..  .
CCDS68 RMLKQMLFRYQGYIGAALVLGGVDVT-GPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFE
           130       140        150       160       170       180  

     160       170       180       190       200       210         
pF1KB6 AAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE
         ..: :  :: . ....::: ..  : .::. : : .:.   .:               
CCDS68 DKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGTRL
            190       200       210       220       230       240  

CCDS68 GRYRCEKGTTAVLTEKITPLEIEVLEETVQTMDTS
            250       260       270       

>>CCDS9584.1 PSMB5 gene_id:5693|Hs108|chr14               (263 aa)
 initn: 326 init1: 155 opt: 313  Z-score: 407.4  bits: 82.8 E(32554): 2.3e-16
Smith-Waterman score: 313; 29.8% identity (59.5% similar) in 205 aa overlap (2-202:39-242)

                                            10          20         
pF1KB6                              MLRAGAPTGDLPRAG--EVHTGTTIMAVEFD
                                     :  .::   .:.    :.  ::: .: .: 
CCDS95 RPLPVNQRGFFGLGGRADLLDLGPGSLSDGLSLAAPGWGVPEEPGIEMLHGTTTLAFKFR
       10        20        30        40        50        60        

      30        40        50        60        70        80         
pF1KB6 GGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIE
        ::....:::..::  .....  :.  ..  .  ...:.::: .    . : : ... ..
CCDS95 HGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELR
       70        80        90       100       110       120        

      90       100       110        120       130        140       
pF1KB6 LEEPPLVLAAANVVRNISYKYR-EDLSAHLMVAGWDQREGGQVY-GTLGGMLTRQPFAIG
        .:   : ::.... :. :.:.   ::   :. :::.:  :  :  . :. ..   :..:
CCDS95 NKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVG
      130       140       150       160       170       180        

       150       160       170       180       190       200       
pF1KB6 GSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAGVDHRV
        :::.. :: .: .:.  .  :.   ..  ::  :  ::. :::.. :  .   :     
CCDS95 -SGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVS
       190       200       210       220       230       240       

       210             
pF1KB6 ILGNELPKFYDE    
                       
CCDS95 SDNVADLHEKYSGSTP
       250       260   

>>CCDS41923.1 PSMB11 gene_id:122706|Hs108|chr14           (300 aa)
 initn: 312 init1: 154 opt: 295  Z-score: 383.4  bits: 78.5 E(32554): 4.9e-15
Smith-Waterman score: 297; 30.7% identity (57.2% similar) in 215 aa overlap (3-205:23-235)

                                      10              20        30 
pF1KB6                     MLRAGA---PTGDLPRAG-EVHT-----GTTIMAVEFDGG
                             :::.   : :  :..  ..:      ::: .: .:  :
CCDS41 MALQDVCKWQSPDTQGPSPHLPRAGGWAVPRGCDPQTFLQIHGPRLAHGTTTLAFRFRHG
               10        20        30        40        50        60

              40        50        60        70        80        90 
pF1KB6 VVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELE
       :. ..:.: : :  :.  .  :. :.:...  . ::..::  .   .   .:.:. ..  
CCDS41 VIAAADTRSSCGSYVACPASCKVIPVHQHLLGTTSGTSADCATWYRVLQRELRLRELREG
               70        80        90       100       110       120

             100       110        120       130         140        
pF1KB6 EPPLVLAAANVVRNISYKYRE-DLSAHLMVAGWDQREGGQVYGTL--GGMLTRQPFAIGG
       . : : .::...  .  .::  :: .   . ::: : : ... .   :  :  . :..: 
CCDS41 QLPSVASAAKLLSAMMSQYRGLDLCVATALCGWD-RSGPELFYVYSDGTRLQGDIFSVG-
              130       140       150        160       170         

      150       160       170       180       190       200        
pF1KB6 SGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAGVDHRVI
       ::: . :: .: .:.  :: .:   ..  :.: :  ::. ::: . :  .  .: .:   
CCDS41 SGSPYAYGVLDRGYRYDMSTQEAYALARCAVAHATHRDAYSGGSVDLFHVRESGWEHVSR
      180       190       200       210       220       230        

      210                                                          
pF1KB6 LGNELPKFYDE                                                 
                                                                   
CCDS41 SDACVLYVELQKLLEPEPEEDASHAHPEPATAHRAAEDRELSVGPGEVTPGDSRMPAGTE
      240       250       260       270       280       290        




219 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:20:38 2016 done: Fri Nov  4 10:20:38 2016
 Total Scan time:  1.390 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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