Result of FASTA (omim) for pF1KB6950
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6950, 234 aa
  1>>>pF1KB6950 234 - 234 aa - 234 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1050+/-0.000394; mu= 15.1415+/- 0.024
 mean_var=59.2622+/-11.670, 0's: 0 Z-trim(111.4): 69  B-trim: 0 in 0/54
 Lambda= 0.166604
 statistics sampled from 19914 (19981) to 19914 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.605), E-opt: 0.2 (0.234), width:  16
 Scan time:  5.750

The best scores are:                                      opt bits E(85289)
NP_002778 (OMIM: 176842) proteasome subunit alpha  ( 234) 1523 374.4 9.2e-104
NP_002783 (OMIM: 606607) proteasome subunit alpha  ( 248)  548 140.1 3.4e-33
NP_001096137 (OMIM: 176846) proteasome subunit alp ( 261)  496 127.6 2.1e-29
NP_002780 (OMIM: 176846) proteasome subunit alpha  ( 261)  496 127.6 2.1e-29
NP_001317605 (OMIM: 176846) proteasome subunit alp ( 261)  496 127.6 2.1e-29
NP_002782 (OMIM: 602855,608446) proteasome subunit ( 246)  465 120.1 3.4e-27
NP_002781 (OMIM: 176844) proteasome subunit alpha  ( 241)  450 116.5 4.1e-26
NP_001317602 (OMIM: 176846) proteasome subunit alp ( 174)  447 115.7 5.1e-26
NP_002777 (OMIM: 602854) proteasome subunit alpha  ( 263)  411 107.1 2.9e-23
NP_683877 (OMIM: 602854) proteasome subunit alpha  ( 269)  410 106.9 3.5e-23
NP_001269163 (OMIM: 602855,608446) proteasome subu ( 227)  403 105.2 9.8e-23
NP_002779 (OMIM: 176843) proteasome subunit alpha  ( 255)  386 101.1 1.8e-21
NP_687033 (OMIM: 176843) proteasome subunit alpha  ( 248)  381 99.9 4.1e-21
NP_001317604 (OMIM: 176846) proteasome subunit alp ( 230)  372 97.7 1.7e-20
NP_001096138 (OMIM: 176846) proteasome subunit alp ( 190)  360 94.8 1.1e-19
NP_001269162 (OMIM: 602855,608446) proteasome subu ( 167)  301 80.6 1.8e-15
NP_001269161 (OMIM: 602855,608446) proteasome subu ( 167)  301 80.6 1.8e-15
XP_016876957 (OMIM: 602855,608446) PREDICTED: prot ( 167)  301 80.6 1.8e-15
NP_001186702 (OMIM: 176844) proteasome subunit alp ( 183)  298 79.9 3.2e-15
NP_001186701 (OMIM: 176844) proteasome subunit alp ( 183)  298 79.9 3.2e-15
NP_001186703 (OMIM: 176844) proteasome subunit alp ( 183)  298 79.9 3.2e-15
NP_001137409 (OMIM: 602854) proteasome subunit alp ( 130)  215 59.9 2.4e-09
NP_002788 (OMIM: 600306) proteasome subunit beta t ( 263)  175 50.4 3.5e-06
NP_004150 (OMIM: 177046,256040) proteasome subunit ( 272)  167 48.5 1.4e-05
NP_683720 (OMIM: 177046,256040) proteasome subunit ( 276)  167 48.5 1.4e-05
NP_001124197 (OMIM: 600306) proteasome subunit bet ( 160)  146 43.3 0.00029
NP_002792 (OMIM: 176847) proteasome subunit beta t ( 273)  146 43.5 0.00045
NP_001093250 (OMIM: 611137) proteasome subunit bet ( 300)  133 40.4  0.0043


>>NP_002778 (OMIM: 176842) proteasome subunit alpha type  (234 aa)
 initn: 1523 init1: 1523 opt: 1523  Z-score: 1983.9  bits: 374.4 E(85289): 9.2e-104
Smith-Waterman score: 1523; 100.0% identity (100.0% similar) in 234 aa overlap (1-234:1-234)

               10        20        30        40        50        60
pF1KB6 MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 YTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 YTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE
              130       140       150       160       170       180

              190       200       210       220       230    
pF1KB6 DLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAGFRRLTPTEVKDYLAAIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAGFRRLTPTEVKDYLAAIA
              190       200       210       220       230    

>>NP_002783 (OMIM: 606607) proteasome subunit alpha type  (248 aa)
 initn: 491 init1: 352 opt: 548  Z-score: 716.9  bits: 140.1 E(85289): 3.4e-33
Smith-Waterman score: 548; 38.8% identity (71.6% similar) in 232 aa overlap (6-233:3-232)

               10        20        30        40        50        60
pF1KB6 MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDER
            :. ..:.:::.:.: :.:::  ::  :. .::... . :::..:::. . : :::
NP_002    MSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDER
                  10        20        30        40        50       

               70        80        90       100       110       120
pF1KB6 SVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQE
       .:.:.  .  .. ....:.  : :....:::   :.. :. ..:. .  ... .::. :.
NP_002 TVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQR
        60        70        80        90       100       110       

              130       140        150       160       170         
pF1KB6 YTQSGGVRPFGVSLLICGWN-EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRY-
       ::::.: ::::.: :: :.. .: : :.:.::::.: ::::.:.:..  . . :::: : 
NP_002 YTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT
       120       130       140       150       160       170       

      180       190       200        210        220       230      
pF1KB6 NEDLELEDAIHTAILTLKESFEG-QMTEDNIEVGICN-EAGFRRLTPTEVKDYLAAIA  
       .: .: .:   :  :..:  .:  :    :::...   . ... :.: :.. :.: :   
NP_002 DEAIETDDL--TIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKE
       180         190       200       210       220       230     

NP_002 KEENEKKKQKKAS
         240        

>>NP_001096137 (OMIM: 176846) proteasome subunit alpha t  (261 aa)
 initn: 416 init1: 209 opt: 496  Z-score: 649.1  bits: 127.6 E(85289): 2.1e-29
Smith-Waterman score: 496; 37.4% identity (67.7% similar) in 235 aa overlap (4-230:3-237)

               10        20        30        40        50        60
pF1KB6 MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDER
          : :.   : ::: :.: :.:::. :.. ..  .:: : .::.::.:...   : :: 
NP_001  MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEV
                10        20        30        40        50         

                70        80        90       100       110         
pF1KB6 SV-HKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQ
          .:.  ... ..   .:.  :  ::... : .::.: : ::::::  :::  . .. :
NP_001 FFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQ
      60        70        80        90       100       110         

     120       130       140        150       160       170        
pF1KB6 EYTQSGGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRY
        ::: :: ::::::::  ::..   . :.:::::: : .:::: .:.: . . ..:.. :
NP_001 AYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDY
     120       130       140       150       160       170         

      180        190       200        210           220       230  
pF1KB6 NE-DLELEDAIHTAILTLKESFE-GQMTEDNIEVG-ICNEAG---FRRLTPTEVKDYLAA
       .: .. :..:.  :: .:..... .... ...:.. .  : :   .: :   ::.. .  
NP_001 KEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKK
     180       190       200       210       220       230         

                             
pF1KB6 IA                    
                             
NP_001 HEEEEAKAEREKKEKEQKEKDK
     240       250       260 

>>NP_002780 (OMIM: 176846) proteasome subunit alpha type  (261 aa)
 initn: 416 init1: 209 opt: 496  Z-score: 649.1  bits: 127.6 E(85289): 2.1e-29
Smith-Waterman score: 496; 37.4% identity (67.7% similar) in 235 aa overlap (4-230:3-237)

               10        20        30        40        50        60
pF1KB6 MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDER
          : :.   : ::: :.: :.:::. :.. ..  .:: : .::.::.:...   : :: 
NP_002  MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEV
                10        20        30        40        50         

                70        80        90       100       110         
pF1KB6 SV-HKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQ
          .:.  ... ..   .:.  :  ::... : .::.: : ::::::  :::  . .. :
NP_002 FFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQ
      60        70        80        90       100       110         

     120       130       140        150       160       170        
pF1KB6 EYTQSGGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRY
        ::: :: ::::::::  ::..   . :.:::::: : .:::: .:.: . . ..:.. :
NP_002 AYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDY
     120       130       140       150       160       170         

      180        190       200        210           220       230  
pF1KB6 NE-DLELEDAIHTAILTLKESFE-GQMTEDNIEVG-ICNEAG---FRRLTPTEVKDYLAA
       .: .. :..:.  :: .:..... .... ...:.. .  : :   .: :   ::.. .  
NP_002 KEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKK
     180       190       200       210       220       230         

                             
pF1KB6 IA                    
                             
NP_002 HEEEEAKAEREKKEKEQKEKDK
     240       250       260 

>>NP_001317605 (OMIM: 176846) proteasome subunit alpha t  (261 aa)
 initn: 416 init1: 209 opt: 496  Z-score: 649.1  bits: 127.6 E(85289): 2.1e-29
Smith-Waterman score: 496; 37.4% identity (67.7% similar) in 235 aa overlap (4-230:3-237)

               10        20        30        40        50        60
pF1KB6 MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDER
          : :.   : ::: :.: :.:::. :.. ..  .:: : .::.::.:...   : :: 
NP_001  MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEV
                10        20        30        40        50         

                70        80        90       100       110         
pF1KB6 SV-HKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQ
          .:.  ... ..   .:.  :  ::... : .::.: : ::::::  :::  . .. :
NP_001 FFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQ
      60        70        80        90       100       110         

     120       130       140        150       160       170        
pF1KB6 EYTQSGGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRY
        ::: :: ::::::::  ::..   . :.:::::: : .:::: .:.: . . ..:.. :
NP_001 AYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDY
     120       130       140       150       160       170         

      180        190       200        210           220       230  
pF1KB6 NE-DLELEDAIHTAILTLKESFE-GQMTEDNIEVG-ICNEAG---FRRLTPTEVKDYLAA
       .: .. :..:.  :: .:..... .... ...:.. .  : :   .: :   ::.. .  
NP_001 KEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKK
     180       190       200       210       220       230         

                             
pF1KB6 IA                    
                             
NP_001 HEEEEAKAEREKKEKEQKEKDK
     240       250       260 

>>NP_002782 (OMIM: 602855,608446) proteasome subunit alp  (246 aa)
 initn: 462 init1: 235 opt: 465  Z-score: 609.2  bits: 120.1 E(85289): 3.4e-27
Smith-Waterman score: 465; 35.6% identity (67.4% similar) in 236 aa overlap (5-234:8-243)

                  10        20        30         40        50      
pF1KB6    MAERGYSFSLTTFSPSGKLVQIEYALAAVA-GGAPSVGIKAANGVVLATEKKQKSIL
              :..  .: ::: :.: :.:::. :.  ::  ::.... . .:..:.::  . :
NP_002 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB6 YDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVAS
        :  .: ..  ::..:: :..::  : :  :.:::  : ..   :   ::. .: .:.:.
NP_002 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD
               70        80        90       100       110       120

        120       130       140        150       160       170     
pF1KB6 VMQEYTQSGGVRPFGVSLLICGWNEGR-PYLFQSDPSGAYFAWKATAMGKNYVNGKTFLE
       . : :::.. .::.:  ... : .: . : ... ::.: : ..:::: : . ... .:::
NP_002 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE
              130       140       150       160       170       180

         180         190       200       210         220       230 
pF1KB6 KRYNE--DLELEDAIHTAILTLKESFEGQMTEDNIEVGICN--EAGFRRLTPTEVKDYLA
       :. ..  :  .:....:::  :.  .  ..  ..::::. .  .  :: :: .:.  .:.
NP_002 KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLV
              190       200       210       220       230       240

             
pF1KB6 AIA   
       :.:   
NP_002 ALAERD
             

>>NP_002781 (OMIM: 176844) proteasome subunit alpha type  (241 aa)
 initn: 413 init1: 234 opt: 450  Z-score: 589.8  bits: 116.5 E(85289): 4.1e-26
Smith-Waterman score: 450; 32.5% identity (70.9% similar) in 234 aa overlap (6-233:8-241)

                 10        20        30        40        50        
pF1KB6   MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYD
              :. ...:::: :.: :.:::. :.  :. ..::....:: ::.::.  : :..
NP_002 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLME
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KB6 ERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVM
         :..:.  :  ::: ..::.  : ..:. .::  .:.....:.: . . ...: :... 
NP_002 PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLA
               70        80        90       100       110       120

          120        130       140       150       160       170   
pF1KB6 ----QEYTQSGGV-RPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTF
           .: .. :.. :::::.::. : .:  : ::. ::::..    : :.:.   .... 
NP_002 LQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSS
              130       140       150       160       170       180

           180       190       200       210        220       230  
pF1KB6 LEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEA-GFRRLTPTEVKDYLAA
       :.. :.... :..::..... ::. .: ...  :::..  . . .:. .:  :... .  
NP_002 LQEVYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKD
              190       200       210       220       230       240

         
pF1KB6 IA
       : 
NP_002 I 
         

>>NP_001317602 (OMIM: 176846) proteasome subunit alpha t  (174 aa)
 initn: 416 init1: 209 opt: 447  Z-score: 588.1  bits: 115.7 E(85289): 5.1e-26
Smith-Waterman score: 447; 44.2% identity (67.9% similar) in 165 aa overlap (4-166:3-167)

               10        20        30        40        50        60
pF1KB6 MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDER
          : :.   : ::: :.: :.:::. :.. ..  .:: : .::.::.:...   : :: 
NP_001  MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEV
                10        20        30        40        50         

                70        80        90       100       110         
pF1KB6 SV-HKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQ
          .:.  ... ..   .:.  :  ::... : .::.: : ::::::  :::  . .. :
NP_001 FFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQ
      60        70        80        90       100       110         

     120       130       140        150       160       170        
pF1KB6 EYTQSGGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRY
        ::: :: ::::::::  ::..   . :.:::::: : .:::: .:.:            
NP_001 AYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAWKLQH     
     120       130       140       150       160       170         

      180       190       200       210       220       230    
pF1KB6 NEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAGFRRLTPTEVKDYLAAIA

>>NP_002777 (OMIM: 602854) proteasome subunit alpha type  (263 aa)
 initn: 376 init1: 256 opt: 411  Z-score: 538.6  bits: 107.1 E(85289): 2.9e-23
Smith-Waterman score: 411; 32.9% identity (69.4% similar) in 216 aa overlap (1-212:1-214)

               10        20        30        40        50        60
pF1KB6 MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDER
       : .  :. ..:..::.:.. :::::. ::  :. .::.:. . .::.. :. .: :  ..
NP_002 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQE
         .:.  . .:::.  .:.  : :.: .  :.   .  .:...:.:...::. ..:  : 
NP_002 --KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQI
                 70        80        90       100       110        

              130       140       150       160       170       180
pF1KB6 YTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE
        ::  : ::.::.::: :...  :..::. ::. ::  .: ..:    ...:.::....:
NP_002 PTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSE
      120       130       140       150       160       170        

                190         200       210       220       230      
pF1KB6 DLE--LEDAIHTAILTLKESF--EGQMTEDNIEVGICNEAGFRRLTPTEVKDYLAAIA  
        .:  :.. .. .. .:.:..  : ..:  :. .::                        
NP_002 FMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEE
      180       190       200       210       220       230        

NP_002 RPQRKAQPAQPADEPAEKADEPMEH
      240       250       260   

>>NP_683877 (OMIM: 602854) proteasome subunit alpha type  (269 aa)
 initn: 376 init1: 256 opt: 410  Z-score: 537.1  bits: 106.9 E(85289): 3.5e-23
Smith-Waterman score: 410; 33.2% identity (70.1% similar) in 211 aa overlap (6-212:12-220)

                     10        20        30        40        50    
pF1KB6       MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKS
                  :. ..:..::.:.. :::::. ::  :. .::.:. . .::.. :. .:
NP_683 MQLSKVKFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQS
               10        20        30        40        50        60

           60        70        80        90       100       110    
pF1KB6 ILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRV
        :  ..  .:.  . .:::.  .:.  : :.: .  :.   .  .:...:.:...::. .
NP_683 ELAAHQ--KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLI
                 70        80        90       100       110        

          120       130       140       150       160       170    
pF1KB6 ASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFL
       .:  :  ::  : ::.::.::: :...  :..::. ::. ::  .: ..:    ...:.:
NP_683 GSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYL
      120       130       140       150       160       170        

          180         190         200       210       220       230
pF1KB6 EKRYNEDLE--LEDAIHTAILTLKESF--EGQMTEDNIEVGICNEAGFRRLTPTEVKDYL
       :....: .:  :.. .. .. .:.:..  : ..:  :. .::                  
NP_683 ERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPF
      180       190       200       210       220       230        

                                      
pF1KB6 AAIA                           
                                      
NP_683 LEGLEERPQRKAQPAQPADEPAEKADEPMEH
      240       250       260         




234 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:31:33 2016 done: Fri Nov  4 11:31:34 2016
 Total Scan time:  5.750 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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