Result of FASTA (omim) for pF1KB6941
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6941, 209 aa
  1>>>pF1KB6941 209 - 209 aa - 209 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0378+/-0.000382; mu= 7.6099+/- 0.024
 mean_var=158.4794+/-31.600, 0's: 0 Z-trim(118.4): 8  B-trim: 1011 in 1/54
 Lambda= 0.101880
 statistics sampled from 31312 (31320) to 31312 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.367), width:  16
 Scan time:  5.060

The best scores are:                                      opt bits E(85289)
NP_056979 (OMIM: 602842,616835) geminin [Homo sapi ( 209) 1328 206.2 3.1e-53
NP_001238918 (OMIM: 602842,616835) geminin [Homo s ( 209) 1328 206.2 3.1e-53
NP_001238919 (OMIM: 602842,616835) geminin [Homo s ( 209) 1328 206.2 3.1e-53
NP_001238920 (OMIM: 602842,616835) geminin [Homo s ( 209) 1328 206.2 3.1e-53
XP_005249216 (OMIM: 602842,616835) PREDICTED: gemi ( 209) 1328 206.2 3.1e-53
XP_011512953 (OMIM: 602842,616835) PREDICTED: gemi ( 203) 1221 190.5 1.6e-48
XP_016864928 (OMIM: 614086) PREDICTED: multicilin  ( 254)  194 39.6  0.0053
NP_001177716 (OMIM: 614086) multicilin [Homo sapie ( 385)  194 39.8  0.0071


>>NP_056979 (OMIM: 602842,616835) geminin [Homo sapiens]  (209 aa)
 initn: 1328 init1: 1328 opt: 1328  Z-score: 1076.8  bits: 206.2 E(85289): 3.1e-53
Smith-Waterman score: 1328; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)

               10        20        30        40        50        60
pF1KB6 MNPSMKQKQEEIKENIKNSSVPRRTLKMIQPSASGSLVGRENELSAGLSKRKHRNDHLTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MNPSMKQKQEEIKENIKNSSVPRRTLKMIQPSASGSLVGRENELSAGLSKRKHRNDHLTS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TTSSPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 TTSSPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEET
              130       140       150       160       170       180

              190       200         
pF1KB6 VEDSLVEDSEIGTCAEGTVSSSTDAKPCI
       :::::::::::::::::::::::::::::
NP_056 VEDSLVEDSEIGTCAEGTVSSSTDAKPCI
              190       200         

>>NP_001238918 (OMIM: 602842,616835) geminin [Homo sapie  (209 aa)
 initn: 1328 init1: 1328 opt: 1328  Z-score: 1076.8  bits: 206.2 E(85289): 3.1e-53
Smith-Waterman score: 1328; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)

               10        20        30        40        50        60
pF1KB6 MNPSMKQKQEEIKENIKNSSVPRRTLKMIQPSASGSLVGRENELSAGLSKRKHRNDHLTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNPSMKQKQEEIKENIKNSSVPRRTLKMIQPSASGSLVGRENELSAGLSKRKHRNDHLTS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TTSSPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TTSSPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEET
              130       140       150       160       170       180

              190       200         
pF1KB6 VEDSLVEDSEIGTCAEGTVSSSTDAKPCI
       :::::::::::::::::::::::::::::
NP_001 VEDSLVEDSEIGTCAEGTVSSSTDAKPCI
              190       200         

>>NP_001238919 (OMIM: 602842,616835) geminin [Homo sapie  (209 aa)
 initn: 1328 init1: 1328 opt: 1328  Z-score: 1076.8  bits: 206.2 E(85289): 3.1e-53
Smith-Waterman score: 1328; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)

               10        20        30        40        50        60
pF1KB6 MNPSMKQKQEEIKENIKNSSVPRRTLKMIQPSASGSLVGRENELSAGLSKRKHRNDHLTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNPSMKQKQEEIKENIKNSSVPRRTLKMIQPSASGSLVGRENELSAGLSKRKHRNDHLTS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TTSSPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TTSSPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEET
              130       140       150       160       170       180

              190       200         
pF1KB6 VEDSLVEDSEIGTCAEGTVSSSTDAKPCI
       :::::::::::::::::::::::::::::
NP_001 VEDSLVEDSEIGTCAEGTVSSSTDAKPCI
              190       200         

>>NP_001238920 (OMIM: 602842,616835) geminin [Homo sapie  (209 aa)
 initn: 1328 init1: 1328 opt: 1328  Z-score: 1076.8  bits: 206.2 E(85289): 3.1e-53
Smith-Waterman score: 1328; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)

               10        20        30        40        50        60
pF1KB6 MNPSMKQKQEEIKENIKNSSVPRRTLKMIQPSASGSLVGRENELSAGLSKRKHRNDHLTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNPSMKQKQEEIKENIKNSSVPRRTLKMIQPSASGSLVGRENELSAGLSKRKHRNDHLTS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TTSSPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TTSSPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEET
              130       140       150       160       170       180

              190       200         
pF1KB6 VEDSLVEDSEIGTCAEGTVSSSTDAKPCI
       :::::::::::::::::::::::::::::
NP_001 VEDSLVEDSEIGTCAEGTVSSSTDAKPCI
              190       200         

>>XP_005249216 (OMIM: 602842,616835) PREDICTED: geminin   (209 aa)
 initn: 1328 init1: 1328 opt: 1328  Z-score: 1076.8  bits: 206.2 E(85289): 3.1e-53
Smith-Waterman score: 1328; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)

               10        20        30        40        50        60
pF1KB6 MNPSMKQKQEEIKENIKNSSVPRRTLKMIQPSASGSLVGRENELSAGLSKRKHRNDHLTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MNPSMKQKQEEIKENIKNSSVPRRTLKMIQPSASGSLVGRENELSAGLSKRKHRNDHLTS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TTSSPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TTSSPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEET
              130       140       150       160       170       180

              190       200         
pF1KB6 VEDSLVEDSEIGTCAEGTVSSSTDAKPCI
       :::::::::::::::::::::::::::::
XP_005 VEDSLVEDSEIGTCAEGTVSSSTDAKPCI
              190       200         

>>XP_011512953 (OMIM: 602842,616835) PREDICTED: geminin   (203 aa)
 initn: 1221 init1: 1221 opt: 1221  Z-score: 992.0  bits: 190.5 E(85289): 1.6e-48
Smith-Waterman score: 1221; 99.5% identity (100.0% similar) in 193 aa overlap (17-209:11-203)

               10        20        30        40        50        60
pF1KB6 MNPSMKQKQEEIKENIKNSSVPRRTLKMIQPSASGSLVGRENELSAGLSKRKHRNDHLTS
                       .:::::::::::::::::::::::::::::::::::::::::::
XP_011       MGLKQNCFYYQNSSVPRRTLKMIQPSASGSLVGRENELSAGLSKRKHRNDHLTS
                     10        20        30        40        50    

               70        80        90       100       110       120
pF1KB6 TTSSPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TTSSPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKL
           60        70        80        90       100       110    

              130       140       150       160       170       180
pF1KB6 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEET
          120       130       140       150       160       170    

              190       200         
pF1KB6 VEDSLVEDSEIGTCAEGTVSSSTDAKPCI
       :::::::::::::::::::::::::::::
XP_011 VEDSLVEDSEIGTCAEGTVSSSTDAKPCI
          180       190       200   

>>XP_016864928 (OMIM: 614086) PREDICTED: multicilin isof  (254 aa)
 initn: 194 init1: 194 opt: 194  Z-score: 174.9  bits: 39.6 E(85289): 0.0053
Smith-Waterman score: 194; 44.6% identity (80.0% similar) in 65 aa overlap (94-158:46-110)

            70        80        90       100       110       120   
pF1KB6 SPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKLHKE
                                     :  :::::::.. ..:: .:: ::..::  
XP_016 CDISPFGPCLSPPLDPRALQSPPLRPPDVPPPEQYWKEVADQNQRALGDALVENNQLHVT
          20        30        40        50        60        70     

           130       140       150       160       170       180   
pF1KB6 IEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEETVED
       . ::..::: ::..: .: :.: .....: ....:                         
XP_016 LTQKQEEIASLKERNVQLKELASRTRHLASVLDKLMITQSRDCGAAAEPFLLKAKAKRSL
          80        90       100       110       120       130     

           190       200                                           
pF1KB6 SLVEDSEIGTCAEGTVSSSTDAKPCI                                  
                                                                   
XP_016 EELVSAAGQDCAEVDAILREISERCDEALQSRDPKRPRLLPEPANTDTRPGNLHGAFRGL
         140       150       160       170       180       190     

>>NP_001177716 (OMIM: 614086) multicilin [Homo sapiens]   (385 aa)
 initn: 222 init1: 194 opt: 194  Z-score: 172.6  bits: 39.8 E(85289): 0.0071
Smith-Waterman score: 194; 44.6% identity (80.0% similar) in 65 aa overlap (94-158:177-241)

            70        80        90       100       110       120   
pF1KB6 SPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKLHKE
                                     :  :::::::.. ..:: .:: ::..::  
NP_001 CDISPFGPCLSPPLDPRALQSPPLRPPDVPPPEQYWKEVADQNQRALGDALVENNQLHVT
        150       160       170       180       190       200      

           130       140       150       160       170       180   
pF1KB6 IEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEETVED
       . ::..::: ::..: .: :.: .....: ....:                         
NP_001 LTQKQEEIASLKERNVQLKELASRTRHLASVLDKLMITQSRDCGAAAEPFLLKAKAKRSL
        210       220       230       240       250       260      

           190       200                                           
pF1KB6 SLVEDSEIGTCAEGTVSSSTDAKPCI                                  
                                                                   
NP_001 EELVSAAGQDCAEVDAILREISERCDEALQSRDPKRPRLLPEPANTDTRPGNLHGAFRGL
        270       280       290       300       310       320      




209 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:39:29 2016 done: Fri Nov  4 11:39:30 2016
 Total Scan time:  5.060 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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