Result of FASTA (omim) for pF1KB8232
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8232, 316 aa
  1>>>pF1KB8232 316 - 316 aa - 316 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8621+/-0.000391; mu= 18.3607+/- 0.024
 mean_var=59.0869+/-11.946, 0's: 0 Z-trim(112.1): 28  B-trim: 634 in 1/55
 Lambda= 0.166851
 statistics sampled from 20934 (20956) to 20934 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.246), width:  16
 Scan time:  7.200

The best scores are:                                      opt bits E(85289)
NP_001505 (OMIM: 189963) transcription initiation  ( 316) 2081 509.2 4.3e-144
XP_011539601 (OMIM: 189963) PREDICTED: transcripti ( 285) 1869 458.2 9.1e-129
XP_011534974 (OMIM: 604902,616202) PREDICTED: tran ( 632)  246 67.7   7e-11
XP_005267618 (OMIM: 604902,616202) PREDICTED: tran ( 676)  246 67.7 7.4e-11
NP_001510 (OMIM: 604902,616202) transcription fact ( 677)  246 67.7 7.4e-11
NP_001229717 (OMIM: 604902,616202) transcription f ( 650)  228 63.4 1.5e-09
NP_001229716 (OMIM: 604902,616202) transcription f ( 562)  190 54.2 7.3e-07
NP_001229715 (OMIM: 604902,616202) transcription f ( 584)  190 54.2 7.5e-07
XP_011534975 (OMIM: 604902,616202) PREDICTED: tran ( 627)  170 49.4 2.2e-05
NP_060780 (OMIM: 607013) transcription factor IIIB ( 419)  153 45.2 0.00028
NP_001229719 (OMIM: 604902,616202) transcription f ( 208)  148 43.8 0.00036


>>NP_001505 (OMIM: 189963) transcription initiation fact  (316 aa)
 initn: 2081 init1: 2081 opt: 2081  Z-score: 2707.9  bits: 509.2 E(85289): 4.3e-144
Smith-Waterman score: 2081; 100.0% identity (100.0% similar) in 316 aa overlap (1-316:1-316)

               10        20        30        40        50        60
pF1KB8 MASTSRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASTSRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 TKDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TKDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 CAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 ELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLF
              250       260       270       280       290       300

              310      
pF1KB8 PTDFKFDTPVDKLPQL
       ::::::::::::::::
NP_001 PTDFKFDTPVDKLPQL
              310      

>>XP_011539601 (OMIM: 189963) PREDICTED: transcription i  (285 aa)
 initn: 1869 init1: 1869 opt: 1869  Z-score: 2432.7  bits: 458.2 E(85289): 9.1e-129
Smith-Waterman score: 1869; 100.0% identity (100.0% similar) in 285 aa overlap (32-316:1-285)

              10        20        30        40        50        60 
pF1KB8 ASTSRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKAT
                                     ::::::::::::::::::::::::::::::
XP_011                               MICPECGLVVGDRVIDVGSEWRTFSNDKAT
                                             10        20        30

              70        80        90       100       110       120 
pF1KB8 KDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEI
               40        50        60        70        80        90

             130       140       150       160       170       180 
pF1KB8 TTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEIC
              100       110       120       130       140       150

             190       200       210       220       230       240 
pF1KB8 AVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVE
              160       170       180       190       200       210

             250       260       270       280       290       300 
pF1KB8 LDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFP
              220       230       240       250       260       270

             310      
pF1KB8 TDFKFDTPVDKLPQL
       :::::::::::::::
XP_011 TDFKFDTPVDKLPQL
              280     

>>XP_011534974 (OMIM: 604902,616202) PREDICTED: transcri  (632 aa)
 initn: 259 init1: 141 opt: 246  Z-score: 316.3  bits: 67.7 E(85289): 7e-11
Smith-Waterman score: 261; 23.8% identity (55.4% similar) in 294 aa overlap (26-313:17-275)

               10        20        30        40        50        60
pF1KB8 MASTSRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKA
                                :   :: .:  :: :. : .:              
XP_011          MTGRVCRGCGGTDIELDAARGDAVCTACGSVLEDNII--------------
                        10        20        30                     

               70        80           90       100       110       
pF1KB8 TKDPSRVGDSQNPLLSDGDLSTMIGKGT---GAASFDEFGNSKYQNRRTMSSSDRAMMNA
             :.. :  . :.:  :. .:. .   ::..   .:.. . :    : . ....:.
XP_011 ------VSEVQF-VESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKESRA-QTLQNG
              40         50        60        70        80          

       120       130       140       150       160       170       
pF1KB8 FKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTF
        ..:  ......: .. .: . :.::..  ..  .::    . .::::..:: ::.:. .
XP_011 RRHIHHLGNQLQLNQHCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHML
      90       100       110       120       130       140         

       180       190       200       210       220          230    
pF1KB8 KEICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQ---VQMAATH
        ..  . ...   .:. : :. . :  ..  :    .. ::   : . ..   :.:.: .
XP_011 LDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRFAHLLEFGEKNHEVSMTALR
     150       160       170       180       190       200         

          240       250       260       270       280       290    
pF1KB8 IARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYP
       . ..  .  .  :: : .. .::. .:..    .:: ::. ... : . :.:.  ::   
XP_011 LLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRK--RL---
     210       220       230       240       250       260         

          300       310                                            
pF1KB8 RAPDLFPTDFKFDTPVDKLPQL                                      
              :.:. :::...:                                         
XP_011 -------TEFE-DTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEE
                  270       280       290       300       310      

>>XP_005267618 (OMIM: 604902,616202) PREDICTED: transcri  (676 aa)
 initn: 259 init1: 141 opt: 246  Z-score: 315.9  bits: 67.7 E(85289): 7.4e-11
Smith-Waterman score: 261; 23.8% identity (55.4% similar) in 294 aa overlap (26-313:17-275)

               10        20        30        40        50        60
pF1KB8 MASTSRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKA
                                :   :: .:  :: :. : .:              
XP_005          MTGRVCRGCGGTDIELDAARGDAVCTACGSVLEDNII--------------
                        10        20        30                     

               70        80           90       100       110       
pF1KB8 TKDPSRVGDSQNPLLSDGDLSTMIGKGT---GAASFDEFGNSKYQNRRTMSSSDRAMMNA
             :.. :  . :.:  :. .:. .   ::..   .:.. . :    : . ....:.
XP_005 ------VSEVQF-VESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKESRA-QTLQNG
              40         50        60        70        80          

       120       130       140       150       160       170       
pF1KB8 FKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTF
        ..:  ......: .. .: . :.::..  ..  .::    . .::::..:: ::.:. .
XP_005 RRHIHHLGNQLQLNQHCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHML
      90       100       110       120       130       140         

       180       190       200       210       220          230    
pF1KB8 KEICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQ---VQMAATH
        ..  . ...   .:. : :. . :  ..  :    .. ::   : . ..   :.:.: .
XP_005 LDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRFAHLLEFGEKNHEVSMTALR
     150       160       170       180       190       200         

          240       250       260       270       280       290    
pF1KB8 IARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYP
       . ..  .  .  :: : .. .::. .:..    .:: ::. ... : . :.:.  ::   
XP_005 LLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRK--RL---
     210       220       230       240       250       260         

          300       310                                            
pF1KB8 RAPDLFPTDFKFDTPVDKLPQL                                      
              :.:. :::...:                                         
XP_005 -------TEFE-DTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEE
                  270       280       290       300       310      

>>NP_001510 (OMIM: 604902,616202) transcription factor I  (677 aa)
 initn: 259 init1: 141 opt: 246  Z-score: 315.9  bits: 67.7 E(85289): 7.4e-11
Smith-Waterman score: 261; 23.8% identity (55.4% similar) in 294 aa overlap (26-313:17-275)

               10        20        30        40        50        60
pF1KB8 MASTSRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKA
                                :   :: .:  :: :. : .:              
NP_001          MTGRVCRGCGGTDIELDAARGDAVCTACGSVLEDNII--------------
                        10        20        30                     

               70        80           90       100       110       
pF1KB8 TKDPSRVGDSQNPLLSDGDLSTMIGKGT---GAASFDEFGNSKYQNRRTMSSSDRAMMNA
             :.. :  . :.:  :. .:. .   ::..   .:.. . :    : . ....:.
NP_001 ------VSEVQF-VESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKESRA-QTLQNG
              40         50        60        70        80          

       120       130       140       150       160       170       
pF1KB8 FKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTF
        ..:  ......: .. .: . :.::..  ..  .::    . .::::..:: ::.:. .
NP_001 RRHIHHLGNQLQLNQHCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHML
      90       100       110       120       130       140         

       180       190       200       210       220          230    
pF1KB8 KEICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQ---VQMAATH
        ..  . ...   .:. : :. . :  ..  :    .. ::   : . ..   :.:.: .
NP_001 LDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRFAHLLEFGEKNHEVSMTALR
     150       160       170       180       190       200         

          240       250       260       270       280       290    
pF1KB8 IARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYP
       . ..  .  .  :: : .. .::. .:..    .:: ::. ... : . :.:.  ::   
NP_001 LLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRK--RL---
     210       220       230       240       250       260         

          300       310                                            
pF1KB8 RAPDLFPTDFKFDTPVDKLPQL                                      
              :.:. :::...:                                         
NP_001 -------TEFE-DTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEE
                  270       280       290       300       310      

>>NP_001229717 (OMIM: 604902,616202) transcription facto  (650 aa)
 initn: 259 init1: 141 opt: 228  Z-score: 292.7  bits: 63.4 E(85289): 1.5e-09
Smith-Waterman score: 230; 24.3% identity (60.4% similar) in 202 aa overlap (115-313:60-248)

           90       100       110       120       130       140    
pF1KB8 GKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQ
                                     ... ..:  ......: .. .: . :.::.
NP_001 SVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGRRHIHHLGNQLQLNQHCLDTAFNFFKM
      30        40        50        60        70        80         

          150       160       170       180       190       200    
pF1KB8 VYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALET
       .  ..  .::    . .::::..:: ::.:. . ..  . ...   .:. : :. . :  
NP_001 AVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCI
      90       100       110       120       130       140         

          210       220          230       240       250       260 
pF1KB8 SVDLITTGDFMSRFCSNLCLPKQ---VQMAATHIARKAVELDLVPGRSPISVAAAAIYMA
       ..  :    .. ::   : . ..   :.:.: .. ..  .  .  :: : .. .::. .:
NP_001 NAPAIDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVA
     150       160       170       180       190       200         

             270       280       290       300       310           
pF1KB8 SQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDKLPQL     
       ..    .:: ::. ... : . :.:.  ::          :.:. :::...:        
NP_001 ARMHDFRRTVKEVISVVKVCESTLRK--RL----------TEFE-DTPTSQLTIDEFMKI
     210       220       230                   240        250      

NP_001 DLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGGL
        260       270       280       290       300       310      

>>NP_001229716 (OMIM: 604902,616202) transcription facto  (562 aa)
 initn: 189 init1: 124 opt: 190  Z-score: 244.2  bits: 54.2 E(85289): 7.3e-07
Smith-Waterman score: 192; 26.1% identity (58.2% similar) in 165 aa overlap (152-313:9-160)

             130       140       150       160       170       180 
pF1KB8 TTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEIC
                                     .::    . .::::..:: ::.:. . .. 
NP_001                       MAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLS
                                     10        20        30        

             190       200       210       220          230        
pF1KB8 AVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQ---VQMAATHIARK
        . ...   .:. : :. . :  ..  :    .. ::   : . ..   :.:.: .. ..
NP_001 DLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQR
       40        50        60        70        80        90        

      240       250       260       270       280       290        
pF1KB8 AVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPD
         .  .  :: : .. .::. .:..    .:: ::. ... : . :.:.  ::       
NP_001 MKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRK--RL-------
      100       110       120       130       140                  

      300       310                                                
pF1KB8 LFPTDFKFDTPVDKLPQL                                          
          :.:. :::...:                                             
NP_001 ---TEFE-DTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGE
        150        160       170       180       190       200     

>>NP_001229715 (OMIM: 604902,616202) transcription facto  (584 aa)
 initn: 189 init1: 124 opt: 190  Z-score: 243.9  bits: 54.2 E(85289): 7.5e-07
Smith-Waterman score: 192; 26.1% identity (58.2% similar) in 165 aa overlap (152-313:9-160)

             130       140       150       160       170       180 
pF1KB8 TTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEIC
                                     .::    . .::::..:: ::.:. . .. 
NP_001                       MAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLS
                                     10        20        30        

             190       200       210       220          230        
pF1KB8 AVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQ---VQMAATHIARK
        . ...   .:. : :. . :  ..  :    .. ::   : . ..   :.:.: .. ..
NP_001 DLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQR
       40        50        60        70        80        90        

      240       250       260       270       280       290        
pF1KB8 AVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPD
         .  .  :: : .. .::. .:..    .:: ::. ... : . :.:.  ::       
NP_001 MKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRK--RL-------
      100       110       120       130       140                  

      300       310                                                
pF1KB8 LFPTDFKFDTPVDKLPQL                                          
          :.:. :::...:                                             
NP_001 ---TEFE-DTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGE
        150        160       170       180       190       200     

>>XP_011534975 (OMIM: 604902,616202) PREDICTED: transcri  (627 aa)
 initn: 154 init1: 101 opt: 170  Z-score: 217.5  bits: 49.4 E(85289): 2.2e-05
Smith-Waterman score: 183; 23.3% identity (55.6% similar) in 180 aa overlap (26-202:17-174)

               10        20        30        40        50        60
pF1KB8 MASTSRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKA
                                :   :: .:  :: :. : .:              
XP_011          MTGRVCRGCGGTDIELDAARGDAVCTACGSVLEDNII--------------
                        10        20        30                     

               70        80           90       100       110       
pF1KB8 TKDPSRVGDSQNPLLSDGDLSTMIGKGT---GAASFDEFGNSKYQNRRTMSSSDRAMMNA
             :.. :  . :.:  :. .:. .   ::..   .:.. . :    : . ....:.
XP_011 ------VSEVQF-VESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKESRA-QTLQNG
              40         50        60        70        80          

       120       130       140       150       160       170       
pF1KB8 FKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTF
        ..:  ......: .. .: . :.::..  ..  .::    . .::::..:: ::.:. .
XP_011 RRHIHHLGNQLQLNQHCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHML
      90       100       110       120       130       140         

       180       190       200       210       220       230       
pF1KB8 KEICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIAR
        ..  . ...   .:. : :. . :                                   
XP_011 LDLSDLLQVNVYVLGKTFLLLARELCINAPAIALLVAARMHDFRRTVKEVISVVKVCEST
     150       160       170       180       190       200         

>>NP_060780 (OMIM: 607013) transcription factor IIIB 50   (419 aa)
 initn: 202 init1:  79 opt: 153  Z-score: 197.9  bits: 45.2 E(85289): 0.00028
Smith-Waterman score: 190; 22.5% identity (52.7% similar) in 275 aa overlap (10-264:1-236)

               10         20          30        40        50       
pF1KB8 MASTSRLDALP-RVTCPNHPDAILVED--YRAGDMICPECGLVVGDRVIDVGSEWRTFSN
                .: :  ::.  .. ::::  :  ....: .:: :: . :. .     :::.
NP_060          MPGRGRCPDCGSTELVEDSHYSQSQLVCSDCGCVVTEGVLTT-----TFSD
                        10        20        30        40           

        60        70        80        90       100       110       
pF1KB8 DKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNA
       .                   :.:  .            .. :  .:...  :..:..   
NP_060 E-------------------GNLREVT-----------YSRSTGENEQVSRSQQRGL---
                            50                   60        70      

       120       130       140       150          160       170    
pF1KB8 FKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKG---RANDAIASACLYIACRQEGVP
        ...  .   ..:: .. : .   ..:.:.......   . ...... :. :.:::.. :
NP_060 -RRVRDLCRVLQLPPTFEDTAVAYYQQAYRHSGIRAARLQKKEVLVGCCVLITCRQHNWP
             80        90       100       110       120       130  

          180       190       200       210       220              
pF1KB8 RTFKEICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCL----P----K
        :.  ::..   .   ..  .  :.: :  .:  .  ..... .::.. :    :    :
NP_060 LTMGAICTLLYADLDVFSSTYMQIVKLLGLDVPSLCLAELVKTYCSSFKLFQASPSVPAK
            140       150       160       170       180       190  

        230         240           250       260       270       280
pF1KB8 QVQMAATHIAR--KAVELD----LVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV
        :.     ..:  . :::     :: :: :. : .:: ..: :.                
NP_060 YVEDKEKMLSRTMQLVELANETWLVTGRHPLPVITAATFLAWQSLQPADRLSCSLARFCK
            200       210       220       230       240       250  

              290       300       310                              
pF1KB8 ADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDKLPQL                        
                                                                   
NP_060 LANVDLPYPASSRLQELLAVLLRMAEQLAWLRVLRLDKRSVVKHIGDLLQHRQSLVRSAF
            260       270       280       290       300       310  




316 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:53:02 2016 done: Sat Nov  5 20:53:03 2016
 Total Scan time:  7.200 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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