Result of FASTA (ccds) for pF1KB6539
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6539, 368 aa
  1>>>pF1KB6539 368 - 368 aa - 368 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1107+/-0.000983; mu= 12.1487+/- 0.058
 mean_var=92.1868+/-18.781, 0's: 0 Z-trim(106.7): 85  B-trim: 156 in 1/49
 Lambda= 0.133580
 statistics sampled from 9034 (9127) to 9034 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.28), width:  16
 Scan time:  2.460

The best scores are:                                      opt bits E(32554)
CCDS63540.1 SEC13 gene_id:6396|Hs108|chr3          ( 368) 2591 509.7 1.6e-144
CCDS2599.1 SEC13 gene_id:6396|Hs108|chr3           ( 322) 2267 447.3 8.8e-126
CCDS46751.1 SEC13 gene_id:6396|Hs108|chr3          ( 308) 2181 430.7 8.3e-121
CCDS45832.1 SEH1L gene_id:81929|Hs108|chr18        ( 360)  346 77.1 2.7e-14
CCDS32791.1 SEH1L gene_id:81929|Hs108|chr18        ( 421)  346 77.1   3e-14


>>CCDS63540.1 SEC13 gene_id:6396|Hs108|chr3               (368 aa)
 initn: 2591 init1: 2591 opt: 2591  Z-score: 2708.2  bits: 509.7 E(32554): 1.6e-144
Smith-Waterman score: 2591; 100.0% identity (100.0% similar) in 368 aa overlap (1-368:1-368)

               10        20        30        40        50        60
pF1KB6 MREPVLTWCVPLELLCSHPLPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MREPVLTWCVPLELLCSHPLPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNIL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 TGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 TGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 KEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 KEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 PKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 PKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASV
              310       320       330       340       350       360

               
pF1KB6 TEGQQNEQ
       ::::::::
CCDS63 TEGQQNEQ
               

>>CCDS2599.1 SEC13 gene_id:6396|Hs108|chr3                (322 aa)
 initn: 2267 init1: 2267 opt: 2267  Z-score: 2371.6  bits: 447.3 E(32554): 8.8e-126
Smith-Waterman score: 2267; 100.0% identity (100.0% similar) in 322 aa overlap (47-368:1-322)

         20        30        40        50        60        70      
pF1KB6 SHPLPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHEDMIHDAQMDYYGTRLAT
                                     ::::::::::::::::::::::::::::::
CCDS25                               MVSVINTVDTSHEDMIHDAQMDYYGTRLAT
                                             10        20        30

         80        90       100       110       120       130      
pF1KB6 CSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 CSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN
               40        50        60        70        80        90

        140       150       160       170       180       190      
pF1KB6 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT
              100       110       120       130       140       150

        200       210       220       230       240       250      
pF1KB6 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA
              160       170       180       190       200       210

        260       270       280       290       300       310      
pF1KB6 HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSW
              220       230       240       250       260       270

        320       330       340       350       360        
pF1KB6 SITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASVTEGQQNEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 SITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASVTEGQQNEQ
              280       290       300       310       320  

>>CCDS46751.1 SEC13 gene_id:6396|Hs108|chr3               (308 aa)
 initn: 2181 init1: 2181 opt: 2181  Z-score: 2282.3  bits: 430.7 E(32554): 8.3e-121
Smith-Waterman score: 2181; 100.0% identity (100.0% similar) in 308 aa overlap (61-368:1-308)

               40        50        60        70        80        90
pF1KB6 KLYTYRACAGKDEMGKMVSVINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRN
                                     ::::::::::::::::::::::::::::::
CCDS46                               MIHDAQMDYYGTRLATCSSDRSVKIFDVRN
                                             10        20        30

              100       110       120       130       140       150
pF1KB6 GGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDS
               40        50        60        70        80        90

              160       170       180       190       200       210
pF1KB6 SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP
              100       110       120       130       140       150

              220       230       240       250       260       270
pF1KB6 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSI
              160       170       180       190       200       210

              280       290       300       310       320       330
pF1KB6 GLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN
              220       230       240       250       260       270

              340       350       360        
pF1KB6 KVTLWKESVDGQWVCISDVNKGQGSVSASVTEGQQNEQ
       ::::::::::::::::::::::::::::::::::::::
CCDS46 KVTLWKESVDGQWVCISDVNKGQGSVSASVTEGQQNEQ
              280       290       300        

>>CCDS45832.1 SEH1L gene_id:81929|Hs108|chr18             (360 aa)
 initn: 493 init1: 158 opt: 346  Z-score: 370.2  bits: 77.1 E(32554): 2.7e-14
Smith-Waterman score: 577; 31.0% identity (61.7% similar) in 345 aa overlap (50-366:3-336)

      20        30        40        50        60        70         
pF1KB6 LPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHEDMIHDAQMDYYGTRLATCSS
                                     :  .. ..:.:.:::...:..: :.:::::
CCDS45                             MFVARSIAADHKDLIHDVSFDFHGRRMATCSS
                                           10        20        30  

      80        90        100       110       120       130        
pF1KB6 DRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT
       :.:::..:  ..:.    :. . : : ::.:.:::: .:..:::::.:: . .:.:  : 
CCDS45 DQSVKVWDKSESGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGE
             40        50        60        70        80        90  

                140       150       160       170          180     
pF1KB6 ----------WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLT---YTGEGQ
                 : :    .   .::..: .::. .::.::  :.:: . .       . .:
CCDS45 SNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQ
            100       110       120       130       140       150  

         190       200         210       220        230       240  
pF1KB6 WEVKKINNAHTIGCNAVSWAPAV--VPGSLIDHPSGQK-PNYIKRFASGGCDNLIKLWKE
       : ... . .  ..:. .:: :.   . . .:   : .. :: . .         ..... 
CCDS45 WSLQH-EISCKLSCSCISWNPSSSRAHSPMIAVGSDDSSPNAMAK---------VQIFEY
             160       170       180       190                200  

             250       260       270       280        290       300
pF1KB6 EEDG-QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF-IWTCDDASSNTWS
       .:.  .. . . : . .: :.:.:.::..:     .:  ..: :.: .       ... .
CCDS45 NENTRKYAKAETLMTVTDPVHDIAFAPNLGRSFHILAIATKDVRIFTLKPVRKELTSSGG
            210       220       230       240       250       260  

                      310       320       330       340       350  
pF1KB6 P-----KLLHKF---NDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKG
       :     ... .:   :. ::.:::.::...:: :: :. : ::: .   .: : . . ::
CCDS45 PTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNWKC-TGILKG
            270       280       290       300       310        320 

             360                              
pF1KB6 QGS-VSASVTEGQQNEQ                      
       .:: :..:  .: .:                        
CCDS45 NGSPVNGSSQQGTSNPSLGSTIPSLQNSLNGSSAGRKHS
             330       340       350       360

>>CCDS32791.1 SEH1L gene_id:81929|Hs108|chr18             (421 aa)
 initn: 493 init1: 158 opt: 346  Z-score: 369.2  bits: 77.1 E(32554): 3e-14
Smith-Waterman score: 577; 31.0% identity (61.7% similar) in 345 aa overlap (50-366:3-336)

      20        30        40        50        60        70         
pF1KB6 LPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHEDMIHDAQMDYYGTRLATCSS
                                     :  .. ..:.:.:::...:..: :.:::::
CCDS32                             MFVARSIAADHKDLIHDVSFDFHGRRMATCSS
                                           10        20        30  

      80        90        100       110       120       130        
pF1KB6 DRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT
       :.:::..:  ..:.    :. . : : ::.:.:::: .:..:::::.:: . .:.:  : 
CCDS32 DQSVKVWDKSESGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGE
             40        50        60        70        80        90  

                140       150       160       170          180     
pF1KB6 ----------WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLT---YTGEGQ
                 : :    .   .::..: .::. .::.::  :.:: . .       . .:
CCDS32 SNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQ
            100       110       120       130       140       150  

         190       200         210       220        230       240  
pF1KB6 WEVKKINNAHTIGCNAVSWAPAV--VPGSLIDHPSGQK-PNYIKRFASGGCDNLIKLWKE
       : ... . .  ..:. .:: :.   . . .:   : .. :: . .         ..... 
CCDS32 WSLQH-EISCKLSCSCISWNPSSSRAHSPMIAVGSDDSSPNAMAK---------VQIFEY
             160       170       180       190                200  

             250       260       270       280        290       300
pF1KB6 EEDG-QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF-IWTCDDASSNTWS
       .:.  .. . . : . .: :.:.:.::..:     .:  ..: :.: .       ... .
CCDS32 NENTRKYAKAETLMTVTDPVHDIAFAPNLGRSFHILAIATKDVRIFTLKPVRKELTSSGG
            210       220       230       240       250       260  

                      310       320       330       340       350  
pF1KB6 P-----KLLHKF---NDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKG
       :     ... .:   :. ::.:::.::...:: :: :. : ::: .   .: : . . ::
CCDS32 PTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNWKC-TGILKG
            270       280       290       300       310        320 

             360                                                   
pF1KB6 QGS-VSASVTEGQQNEQ                                           
       .:: :..:  .: .:                                             
CCDS32 NGSPVNGSSQQGTSNPSLGSTIPSLQNSLNGSSAGRYFFTPLDSPRAGSRWSSYAQLLPP
             330       340       350       360       370       380 




368 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:10:10 2016 done: Fri Nov  4 16:10:10 2016
 Total Scan time:  2.460 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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