Result of FASTA (omim) for pF1KB6422
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6422, 339 aa
  1>>>pF1KB6422 339 - 339 aa - 339 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4634+/-0.000461; mu= 14.4861+/- 0.028
 mean_var=59.9439+/-11.805, 0's: 0 Z-trim(107.9): 78  B-trim: 0 in 0/51
 Lambda= 0.165654
 statistics sampled from 15850 (15934) to 15850 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.542), E-opt: 0.2 (0.187), width:  16
 Scan time:  7.510

The best scores are:                                      opt bits E(85289)
XP_011520159 (OMIM: 114480,179617,614508) PREDICTE ( 339) 2175 528.8 6.4e-150
XP_011520162 (OMIM: 114480,179617,614508) PREDICTE ( 339) 2175 528.8 6.4e-150
NP_002866 (OMIM: 114480,179617,614508) DNA repair  ( 339) 2175 528.8 6.4e-150
XP_011520160 (OMIM: 114480,179617,614508) PREDICTE ( 339) 2175 528.8 6.4e-150
XP_011520161 (OMIM: 114480,179617,614508) PREDICTE ( 339) 2175 528.8 6.4e-150
XP_006720689 (OMIM: 114480,179617,614508) PREDICTE ( 339) 2175 528.8 6.4e-150
NP_001157741 (OMIM: 114480,179617,614508) DNA repa ( 340) 1900 463.1 3.9e-130
NP_597994 (OMIM: 114480,179617,614508) DNA repair  ( 340) 1900 463.1 3.9e-130
XP_011520163 (OMIM: 114480,179617,614508) PREDICTE ( 280) 1642 401.4 1.2e-111
NP_001157742 (OMIM: 114480,179617,614508) DNA repa ( 280) 1642 401.4 1.2e-111
XP_011520164 (OMIM: 114480,179617,614508) PREDICTE ( 215) 1401 343.8 2.1e-94
NP_008999 (OMIM: 602721) meiotic recombination pro ( 340) 1108 273.8 3.7e-73
XP_011528137 (OMIM: 602721) PREDICTED: meiotic rec ( 362) 1005 249.2   1e-65
XP_011528136 (OMIM: 602721) PREDICTED: meiotic rec ( 362) 1005 249.2   1e-65
XP_016884031 (OMIM: 602721) PREDICTED: meiotic rec ( 271)  538 137.5 3.1e-32
XP_006724175 (OMIM: 602721) PREDICTED: meiotic rec ( 285)  517 132.5 1.1e-30
NP_001265137 (OMIM: 602721) meiotic recombination  ( 285)  517 132.5 1.1e-30
XP_011528140 (OMIM: 602721) PREDICTED: meiotic rec ( 293)  435 112.9 8.5e-25
XP_011528139 (OMIM: 602721) PREDICTED: meiotic rec ( 307)  412 107.4   4e-23
XP_011535353 (OMIM: 602948) PREDICTED: DNA repair  ( 258)  260 71.1   3e-12
XP_011535352 (OMIM: 602948) PREDICTED: DNA repair  ( 274)  260 71.1 3.1e-12
NP_001308747 (OMIM: 602948) DNA repair protein RAD ( 347)  260 71.1 3.9e-12
NP_001308739 (OMIM: 602948) DNA repair protein RAD ( 347)  260 71.1 3.9e-12
NP_001308738 (OMIM: 602948) DNA repair protein RAD ( 347)  260 71.1 3.9e-12
NP_001308748 (OMIM: 602948) DNA repair protein RAD ( 348)  260 71.1 3.9e-12
NP_598194 (OMIM: 602948) DNA repair protein RAD51  ( 350)  260 71.1 3.9e-12
NP_002868 (OMIM: 602948) DNA repair protein RAD51  ( 350)  260 71.1 3.9e-12
NP_001308741 (OMIM: 602948) DNA repair protein RAD ( 351)  260 71.1 3.9e-12
NP_001308743 (OMIM: 602948) DNA repair protein RAD ( 351)  260 71.1 3.9e-12
NP_598193 (OMIM: 602948) DNA repair protein RAD51  ( 384)  260 71.1 4.2e-12
NP_001308750 (OMIM: 602948) DNA repair protein RAD ( 425)  260 71.2 4.7e-12
XP_016877034 (OMIM: 602948) PREDICTED: DNA repair  ( 500)  260 71.2 5.4e-12
NP_001308744 (OMIM: 602948) DNA repair protein RAD ( 332)  245 67.5 4.5e-11
NP_002869 (OMIM: 602954,614291) DNA repair protein ( 328)  242 66.8 7.3e-11
NP_001136043 (OMIM: 602954,614291) DNA repair prot ( 348)  219 61.3 3.5e-09
NP_005422 (OMIM: 600375) DNA repair protein XRCC2  ( 280)  197 56.0 1.1e-07
NP_001093589 (OMIM: 114480,600675,613972) DNA repa ( 346)  195 55.6 1.8e-07
XP_011535440 (OMIM: 114480,600675,613972) PREDICTE ( 346)  195 55.6 1.8e-07
XP_005268103 (OMIM: 114480,600675,613972) PREDICTE ( 346)  195 55.6 1.8e-07
NP_005423 (OMIM: 114480,600675,613972) DNA repair  ( 346)  195 55.6 1.8e-07
NP_001093588 (OMIM: 114480,600675,613972) DNA repa ( 346)  195 55.6 1.8e-07
XP_006722065 (OMIM: 189960,602774,613390,613399) P ( 342)  190 54.4 4.2e-07
NP_478123 (OMIM: 189960,602774,613390,613399) DNA  ( 376)  190 54.4 4.5e-07
XP_006722064 (OMIM: 189960,602774,613390,613399) P ( 377)  190 54.4 4.5e-07
XP_016880408 (OMIM: 189960,602774,613390,613399) P ( 225)  153 45.5 0.00013
XP_016880406 (OMIM: 189960,602774,613390,613399) P ( 259)  153 45.5 0.00015
XP_016880403 (OMIM: 189960,602774,613390,613399) P ( 259)  153 45.5 0.00015
XP_016880404 (OMIM: 189960,602774,613390,613399) P ( 259)  153 45.5 0.00015
XP_016880407 (OMIM: 189960,602774,613390,613399) P ( 259)  153 45.5 0.00015
XP_016880405 (OMIM: 189960,602774,613390,613399) P ( 259)  153 45.5 0.00015


>>XP_011520159 (OMIM: 114480,179617,614508) PREDICTED: D  (339 aa)
 initn: 2175 init1: 2175 opt: 2175  Z-score: 2812.5  bits: 528.8 E(85289): 6.4e-150
Smith-Waterman score: 2175; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)

               10        20        30        40        50        60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
              250       260       270       280       290       300

              310       320       330         
pF1KB6 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
       :::::::::::::::::::::::::::::::::::::::
XP_011 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
              310       320       330         

>>XP_011520162 (OMIM: 114480,179617,614508) PREDICTED: D  (339 aa)
 initn: 2175 init1: 2175 opt: 2175  Z-score: 2812.5  bits: 528.8 E(85289): 6.4e-150
Smith-Waterman score: 2175; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)

               10        20        30        40        50        60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
              250       260       270       280       290       300

              310       320       330         
pF1KB6 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
       :::::::::::::::::::::::::::::::::::::::
XP_011 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
              310       320       330         

>>NP_002866 (OMIM: 114480,179617,614508) DNA repair prot  (339 aa)
 initn: 2175 init1: 2175 opt: 2175  Z-score: 2812.5  bits: 528.8 E(85289): 6.4e-150
Smith-Waterman score: 2175; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)

               10        20        30        40        50        60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
              250       260       270       280       290       300

              310       320       330         
pF1KB6 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
       :::::::::::::::::::::::::::::::::::::::
NP_002 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
              310       320       330         

>>XP_011520160 (OMIM: 114480,179617,614508) PREDICTED: D  (339 aa)
 initn: 2175 init1: 2175 opt: 2175  Z-score: 2812.5  bits: 528.8 E(85289): 6.4e-150
Smith-Waterman score: 2175; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)

               10        20        30        40        50        60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
              250       260       270       280       290       300

              310       320       330         
pF1KB6 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
       :::::::::::::::::::::::::::::::::::::::
XP_011 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
              310       320       330         

>>XP_011520161 (OMIM: 114480,179617,614508) PREDICTED: D  (339 aa)
 initn: 2175 init1: 2175 opt: 2175  Z-score: 2812.5  bits: 528.8 E(85289): 6.4e-150
Smith-Waterman score: 2175; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)

               10        20        30        40        50        60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
              250       260       270       280       290       300

              310       320       330         
pF1KB6 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
       :::::::::::::::::::::::::::::::::::::::
XP_011 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
              310       320       330         

>>XP_006720689 (OMIM: 114480,179617,614508) PREDICTED: D  (339 aa)
 initn: 2175 init1: 2175 opt: 2175  Z-score: 2812.5  bits: 528.8 E(85289): 6.4e-150
Smith-Waterman score: 2175; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)

               10        20        30        40        50        60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
              250       260       270       280       290       300

              310       320       330         
pF1KB6 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
       :::::::::::::::::::::::::::::::::::::::
XP_006 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
              310       320       330         

>>NP_001157741 (OMIM: 114480,179617,614508) DNA repair p  (340 aa)
 initn: 1929 init1: 1462 opt: 1900  Z-score: 2457.3  bits: 463.1 E(85289): 3.9e-130
Smith-Waterman score: 1900; 89.1% identity (92.9% similar) in 340 aa overlap (1-339:1-340)

               10        20        30        40        50        60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
               10        20        30        40        50        60

               70        80        90        100       110         
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQR-RSEIIQITTGSKELDKLLQGGIET
       :::::::::::::::.:. ... .  ...   .   :    . . .:        :::::
NP_001 INIKGISEAKADKILTESRSVARLECNSVILVYCTLRLSGSSDSPASASRVVGTTGGIET
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB6 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYG
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KB6 LSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELS
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KB6 ARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTR
              250       260       270       280       290       300

     300       310       320       330         
pF1KB6 LYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
       ::::::::::::::::::::::::::::::::::::::::
NP_001 LYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
              310       320       330       340

>>NP_597994 (OMIM: 114480,179617,614508) DNA repair prot  (340 aa)
 initn: 1929 init1: 1462 opt: 1900  Z-score: 2457.3  bits: 463.1 E(85289): 3.9e-130
Smith-Waterman score: 1900; 89.1% identity (92.9% similar) in 340 aa overlap (1-339:1-340)

               10        20        30        40        50        60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_597 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
               10        20        30        40        50        60

               70        80        90        100       110         
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQR-RSEIIQITTGSKELDKLLQGGIET
       :::::::::::::::.:. ... .  ...   .   :    . . .:        :::::
NP_597 INIKGISEAKADKILTESRSVARLECNSVILVYCTLRLSGSSDSPASASRVVGTTGGIET
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB6 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_597 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYG
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KB6 LSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_597 LSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELS
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KB6 ARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_597 ARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTR
              250       260       270       280       290       300

     300       310       320       330         
pF1KB6 LYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
       ::::::::::::::::::::::::::::::::::::::::
NP_597 LYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
              310       320       330       340

>>XP_011520163 (OMIM: 114480,179617,614508) PREDICTED: D  (280 aa)
 initn: 1642 init1: 1642 opt: 1642  Z-score: 2125.4  bits: 401.4 E(85289): 1.2e-111
Smith-Waterman score: 1642; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258)

               10        20        30        40        50        60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
       ::::::::::::::::::                                          
XP_011 RQMHLARFLRMLLRLADEIVSEERKRGNQNLQNLRLSLSS                    
              250       260       270       280                    

>>NP_001157742 (OMIM: 114480,179617,614508) DNA repair p  (280 aa)
 initn: 1642 init1: 1642 opt: 1642  Z-score: 2125.4  bits: 401.4 E(85289): 1.2e-111
Smith-Waterman score: 1642; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258)

               10        20        30        40        50        60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
       ::::::::::::::::::                                          
NP_001 RQMHLARFLRMLLRLADEIVSEERKRGNQNLQNLRLSLSS                    
              250       260       270       280                    




339 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:48:21 2016 done: Fri Nov  4 16:48:22 2016
 Total Scan time:  7.510 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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