hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/Pfam.bin Sequence file: /tmp/20090425/iprscan-20090425-05333456/chunk_1/iprscan-20090425-05333456.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pF1KB6475 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00069.15.ls Protein kinase domain 310.1 3.8e-90 1 PF00069.15.fs Protein kinase domain 308.1 1.5e-89 1 PF07714.7.fs Protein tyrosine kinase 72.2 7.2e-21 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00069.15.fs 1/1 13 300 .. 1 287 [] 308.1 1.5e-89 PF07714.7.fs 1/1 13 213 .. 1 210 [. 72.2 7.2e-21 PF00069.15.ls 1/1 13 300 .. 1 287 [] 310.1 3.8e-90 Alignments of top-scoring domains: PF00069.15.fs: domain 1 of 1, from 13 to 300: score 308.1, E = 1.5e-89 *->yelleklGsGsfGtVykakhkgtgk.iVAvKiikkrkekskkdktar ye++ +G+G++G+V+ka++ ++g + VA+K++++++ +++++ + + pF1KB6475 13 YECVAEIGEGAYGKVFKARDLKNGGrFVALKRVRVQTGEEGMPLSTI 59 rlsEiqilkrLs...HpNIvrlidvfed.....kdhlylVlEycegGLrv r E+++l++L + +HpN+vrl+dv++ ++++++++l lV+E+++ pF1KB6475 60 R--EVAVLRHLEtfeHPNVVRLFDVCTVsrtdrETKLTLVFEHVDQ---- 103 ldLfdylsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPe dL +yl + ++ + +++k+++ Q+lrgl++LHs++++HRDLKP+ pF1KB6475 104 -DLTTYLD-KVPEPGV--PTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQ 149 NILldnngvvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllg NIL+ + g++ K+aDFGlA+ ++ + lt++v+T+wY+APEvll pF1KB6475 150 NILVTSSGQI----KLADFGLARI--YsFQMaLTSVVVTLWYRAPEVLL- 192 gngygtkvDvWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgppl ++ y t+vD WS+G+i++e++ +kp+F+g+ s++dql +i + g p pF1KB6475 193 QSSYATPVDLWSVGCIFAEMFRRKPLFRGS---SdVDQLGKILDVIGLPG 239 efdspewdsisrse.fr......r.l.pnlseeakdLikkcLnkDPskRl e+d+p + +r +++ ++ +++ + ++e +kdL+ kcL+++P+kR+ pF1KB6475 240 EEDWPRDVALPRQAfHSksaqpiEkFvTDIDELGKDLLLKCLTFNPAKRI 289 taeeilqHPwf<-* +a +l HP+f pF1KB6475 290 SAYSALSHPYF 300 PF07714.7.fs: domain 1 of 1, from 13 to 213: score 72.2, E = 7.2e-21 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie + ++GeGa+G+V+k++ ++++ VA K ++ ++ ee + pF1KB6475 13 YECVAEIGEGAYGKVFKARDL---KNGGRFVALKRVRV-QTGEEGM- 54 redFlrEAsiMkklGd...HpNiVrLlGvctkegePggpg.lyiVtEyme + +rE++++++l + +HpN+VrL vct ++ ++ +l +V+E++ pF1KB6475 55 PLSTIREVAVLRHL-EtfeHPNVVRLFDVCTV-SRTDRETkLTLVFEHVD 102 gGdLldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARN dL ++L k +++ ++++++ ++++Q +G+++L+s++ vHRDL N pF1KB6475 103 Q-DLTTYLDKV-PEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQN 150 cLVsenlvVKIsDFGLaRdiynddyY.vrkkgggk.lPvkWmAPEslkyg +LV++++++K +DFGLaR i Y++++ + + APE+l + pF1KB6475 151 ILVTSSGQIKLADFGLAR-I-----YsFQMALTSVvVTLWYRAPEVLLQS 194 kFtskSDVWSFGVlLWEif<-* + + D WS G+ E+f pF1KB6475 195 SYATPVDLWSVGCIFAEMF 213 PF00069.15.ls: domain 1 of 1, from 13 to 300: score 310.1, E = 3.8e-90 *->yelleklGsGsfGtVykakhkgtgk.iVAvKiikkrkekskkdktar ye++ +G+G++G+V+ka++ ++g + VA+K++++++ +++++ + + pF1KB6475 13 YECVAEIGEGAYGKVFKARDLKNGGrFVALKRVRVQTGEEGMPLSTI 59 rlsEiqilkrLs...HpNIvrlidvfed.....kdhlylVlEycegGLrv r E+++l++L + +HpN+vrl+dv++ ++++++++l lV+E+++ pF1KB6475 60 R--EVAVLRHLEtfeHPNVVRLFDVCTVsrtdrETKLTLVFEHVDQ---- 103 ldLfdylsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPe dL +yl + ++ + +++k+++ Q+lrgl++LHs++++HRDLKP+ pF1KB6475 104 -DLTTYLD-KVPEPGV--PTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQ 149 NILldnngvvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllg NIL+ + g++ K+aDFGlA+ ++ + lt++v+T+wY+APEvll pF1KB6475 150 NILVTSSGQI----KLADFGLARI--YsFQMaLTSVVVTLWYRAPEVLL- 192 gngygtkvDvWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgppl ++ y t+vD WS+G+i++e++ +kp+F+g+ s++dql +i + g p pF1KB6475 193 QSSYATPVDLWSVGCIFAEMFRRKPLFRGS---SdVDQLGKILDVIGLPG 239 efdspewdsisrse.fr......r.l.pnlseeakdLikkcLnkDPskRl e+d+p + +r +++ ++ +++ + ++e +kdL+ kcL+++P+kR+ pF1KB6475 240 EEDWPRDVALPRQAfHSksaqpiEkFvTDIDELGKDLLLKCLTFNPAKRI 289 taeeilqHPwf<-* +a +l HP+f pF1KB6475 290 SAYSALSHPYF 300 //