Result of FASTA (ccds) for pF1KB6359
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6359, 254 aa
  1>>>pF1KB6359 254 - 254 aa - 254 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8720+/-0.000974; mu= 11.4818+/- 0.059
 mean_var=64.4051+/-12.694, 0's: 0 Z-trim(103.8): 33  B-trim: 0 in 0/50
 Lambda= 0.159814
 statistics sampled from 7596 (7607) to 7596 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.603), E-opt: 0.2 (0.234), width:  16
 Scan time:  2.240

The best scores are:                                      opt bits E(32554)
CCDS45689.1 PSME3 gene_id:10197|Hs108|chr17        ( 254) 1620 382.3 1.8e-106
CCDS59290.1 PSME3 gene_id:10197|Hs108|chr17        ( 265) 1545 365.0 2.9e-101
CCDS82133.1 PSME3 gene_id:10197|Hs108|chr17        ( 193) 1239 294.4 3.8e-80
CCDS11442.1 PSME3 gene_id:10197|Hs108|chr17        ( 267)  879 211.4   5e-55
CCDS9612.1 PSME1 gene_id:5720|Hs108|chr14          ( 249)  679 165.3 3.5e-41
CCDS61415.1 PSME1 gene_id:5720|Hs108|chr14         ( 233)  600 147.1   1e-35
CCDS41930.1 PSME1 gene_id:5720|Hs108|chr14         ( 250)  600 147.1 1.1e-35
CCDS9614.1 PSME2 gene_id:5721|Hs108|chr14          ( 239)  426 107.0 1.2e-23


>>CCDS45689.1 PSME3 gene_id:10197|Hs108|chr17             (254 aa)
 initn: 1620 init1: 1620 opt: 1620  Z-score: 2025.1  bits: 382.3 E(32554): 1.8e-106
Smith-Waterman score: 1620; 100.0% identity (100.0% similar) in 254 aa overlap (1-254:1-254)

               10        20        30        40        50        60
pF1KB6 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQIS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 RYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIE
              190       200       210       220       230       240

              250    
pF1KB6 KIKRPRSSNAETLY
       ::::::::::::::
CCDS45 KIKRPRSSNAETLY
              250    

>>CCDS59290.1 PSME3 gene_id:10197|Hs108|chr17             (265 aa)
 initn: 1545 init1: 1545 opt: 1545  Z-score: 1931.4  bits: 365.0 E(32554): 2.9e-101
Smith-Waterman score: 1545; 100.0% identity (100.0% similar) in 241 aa overlap (14-254:25-265)

                          10        20        30        40         
pF1KB6            MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPI
                               ::::::::::::::::::::::::::::::::::::
CCDS59 MEKWILKKIKYLQSGGLSASYYSYKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPI
               10        20        30        40        50        60

      50        60        70        80        90       100         
pF1KB6 LNIHDLTQIHSDMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LNIHDLTQIHSDMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGML
               70        80        90       100       110       120

     110       120       130       140       150       160         
pF1KB6 KSNQQLVDIIEKVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 KSNQQLVDIIEKVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVE
              130       140       150       160       170       180

     170       180       190       200       210       220         
pF1KB6 SEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYV
              190       200       210       220       230       240

     230       240       250    
pF1KB6 TLHDMILKNIEKIKRPRSSNAETLY
       :::::::::::::::::::::::::
CCDS59 TLHDMILKNIEKIKRPRSSNAETLY
              250       260     

>>CCDS82133.1 PSME3 gene_id:10197|Hs108|chr17             (193 aa)
 initn: 1239 init1: 1239 opt: 1239  Z-score: 1552.4  bits: 294.4 E(32554): 3.8e-80
Smith-Waterman score: 1239; 100.0% identity (100.0% similar) in 193 aa overlap (62-254:1-193)

              40        50        60        70        80        90 
pF1KB6 NFFPKKLLELDSFLKEPILNIHDLTQIHSDMNLPVPDPILLTNSHDGLDGPTYKKRRLDE
                                     ::::::::::::::::::::::::::::::
CCDS82                               MNLPVPDPILLTNSHDGLDGPTYKKRRLDE
                                             10        20        30

             100       110       120       130       140       150 
pF1KB6 CEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKPEIRLLIEKCNTVKMWVQLLIPRIEDGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 CEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKPEIRLLIEKCNTVKMWVQLLIPRIEDGN
               40        50        60        70        80        90

             160       170       180       190       200       210 
pF1KB6 NFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 NFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDE
              100       110       120       130       140       150

             220       230       240       250    
pF1KB6 KEYISLRLIISELRNQYVTLHDMILKNIEKIKRPRSSNAETLY
       :::::::::::::::::::::::::::::::::::::::::::
CCDS82 KEYISLRLIISELRNQYVTLHDMILKNIEKIKRPRSSNAETLY
              160       170       180       190   

>>CCDS11442.1 PSME3 gene_id:10197|Hs108|chr17             (267 aa)
 initn: 1606 init1: 879 opt: 879  Z-score: 1101.4  bits: 211.4 E(32554): 5e-55
Smith-Waterman score: 1584; 95.1% identity (95.1% similar) in 267 aa overlap (1-254:1-267)

               10        20        30        40        50        60
pF1KB6 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE
               70        80        90       100       110       120

              130                    140       150       160       
pF1KB6 KVKPEIRLLIEKCNT-------------VKMWVQLLIPRIEDGNNFGVSIQEETVAELRT
       :::::::::::::::             ::::::::::::::::::::::::::::::::
CCDS11 KVKPEIRLLIEKCNTPSGKGPHICFDLQVKMWVQLLIPRIEDGNNFGVSIQEETVAELRT
              130       140       150       160       170       180

       170       180       190       200       210       220       
pF1KB6 VESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQ
              190       200       210       220       230       240

       230       240       250    
pF1KB6 YVTLHDMILKNIEKIKRPRSSNAETLY
       :::::::::::::::::::::::::::
CCDS11 YVTLHDMILKNIEKIKRPRSSNAETLY
              250       260       

>>CCDS9612.1 PSME1 gene_id:5720|Hs108|chr14               (249 aa)
 initn: 672 init1: 473 opt: 679  Z-score: 852.7  bits: 165.3 E(32554): 3.5e-41
Smith-Waterman score: 679; 40.9% identity (74.2% similar) in 252 aa overlap (3-254:2-249)

               10        20        30        40        50        60
pF1KB6 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS
         ..:.:. :.. ::: ::: . ...:.:....::::. :::.::::: ::  .:.....
CCDS96  MAMLRVQPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKA
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB6 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE
        ...:::::.   ....       .:.  :: ... .  :    : : .. :...: ...
CCDS96 PLDIPVPDPVKEKEKEE--RKKQQEKEDKDEKKKGEDEDK--GPPCGPVNCNEKIVVLLQ
      60        70          80        90         100       110     

              130       140       150       160       170       180
pF1KB6 KVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQIS
       ..::::. .::. : :  :.:: ::::::::::::..::..   . .....  ..  :::
CCDS96 RLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQIS
         120       130       140       150       160       170     

              190       200       210       220       230       240
pF1KB6 RYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIE
       .:.  :.  :.: :: ::: :::. : :.:: :: ..::.. :.:: :..:.:.::::.:
CCDS96 KYFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAYAVLYDIILKNFE
         180       190       200       210       220       230     

              250    
pF1KB6 KIKRPRSSNAETLY
       :.:.::. .   .:
CCDS96 KLKKPRGETKGMIY
         240         

>>CCDS61415.1 PSME1 gene_id:5720|Hs108|chr14              (233 aa)
 initn: 597 init1: 398 opt: 600  Z-score: 754.8  bits: 147.1 E(32554): 1e-35
Smith-Waterman score: 600; 40.5% identity (73.1% similar) in 227 aa overlap (3-229:2-224)

               10        20        30        40        50        60
pF1KB6 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS
         ..:.:. :.. ::: ::: . ...:.:....::::. :::.::::: ::  .:.....
CCDS61  MAMLRVQPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKA
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB6 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE
        ...:::::.   ....       .:.  :: ... .  :    : : .. :...: ...
CCDS61 PLDIPVPDPVKEKEKEE--RKKQQEKEDKDEKKKGEDEDKG--PPCGPVNCNEKIVVLLQ
      60        70          80        90         100       110     

              130       140       150       160       170       180
pF1KB6 KVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQIS
       ..::::. .::. : :  :.:: ::::::::::::..::..   . .....  ..  :::
CCDS61 RLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQIS
         120       130       140       150       160       170     

              190       200       210       220       230       240
pF1KB6 RYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIE
       .:.  :.  :.: :: ::: :::. : :.:: :: ..::.. :.:: ::           
CCDS61 KYFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAYVRRLCYMTSS  
         180       190       200       210       220       230     

              250    
pF1KB6 KIKRPRSSNAETLY

>>CCDS41930.1 PSME1 gene_id:5720|Hs108|chr14              (250 aa)
 initn: 597 init1: 398 opt: 600  Z-score: 754.3  bits: 147.1 E(32554): 1.1e-35
Smith-Waterman score: 600; 40.5% identity (73.1% similar) in 227 aa overlap (3-229:2-224)

               10        20        30        40        50        60
pF1KB6 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS
         ..:.:. :.. ::: ::: . ...:.:....::::. :::.::::: ::  .:.....
CCDS41  MAMLRVQPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKA
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB6 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE
        ...:::::.   ....       .:.  :: ... .  :    : : .. :...: ...
CCDS41 PLDIPVPDPVKEKEKEE--RKKQQEKEDKDEKKKGEDEDKG--PPCGPVNCNEKIVVLLQ
      60        70          80        90         100       110     

              130       140       150       160       170       180
pF1KB6 KVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQIS
       ..::::. .::. : :  :.:: ::::::::::::..::..   . .....  ..  :::
CCDS41 RLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQIS
         120       130       140       150       160       170     

              190       200       210       220       230       240
pF1KB6 RYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIE
       .:.  :.  :.: :: ::: :::. : :.:: :: ..::.. :.:: ::           
CCDS41 KYFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAYVRRQGQGRGGQR
         180       190       200       210       220       230     

              250     
pF1KB6 KIKRPRSSNAETLY 
                      
CCDS41 QLSQATHSLTLQARG
         240       250

>>CCDS9614.1 PSME2 gene_id:5721|Hs108|chr14               (239 aa)
 initn: 582 init1: 399 opt: 426  Z-score: 537.8  bits: 107.0 E(32554): 1.2e-23
Smith-Waterman score: 535; 33.6% identity (66.8% similar) in 250 aa overlap (5-254:7-239)

                 10        20        30        40        50        
pF1KB6   MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQI
             .... :.. .:. ::. . .:::...  :.:.:.. :...:.:  ::. :::..
CCDS96 MAKPCGVRLSGEARKQVEVFRQNLFQEAEEFLYRFLPQKIIYLNQLLQEDSLNVADLTSL
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KB6 HSDMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDI
       .. ...:.:::     . : ..    .:... .:              :.: .:......
CCDS96 RAPLDIPIPDP---PPKDDEMETDKQEKKEVHKC--------------GFLPGNEKVLSL
               70           80        90                     100   

      120       130       140       150       160       170        
pF1KB6 IEKVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQ
       .  ::::.  : :::  :  :.: :::.:::::.:::.:::... .. .:.... ..   
CCDS96 LALVKPEVWTLKEKCILVITWIQHLIPKIEDGNDFGVAIQEKVLERVNAVKTKVEAFQTT
           110       120       130       140       150       160   

      180       190       200       210       220       230        
pF1KB6 ISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKN
       ::.:.  :.  :.: .:  :: :::  : : ::  :  :: .. .::  :. :. .: .:
CCDS96 ISKYFSERGDAVAKASKETHVMDYRALVHERDEAAYGELRAMVLDLRAFYAELYHIISSN
           170       180       190       200       210       220   

      240       250    
pF1KB6 IEKIKRPRSSNAETLY
       .:::  :.. .  ..:
CCDS96 LEKIVNPKGEEKPSMY
           230         




254 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:35:07 2016 done: Fri Nov  4 18:35:08 2016
 Total Scan time:  2.240 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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