Result of FASTA (omim) for pF1KB4155
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4155, 299 aa
  1>>>pF1KB4155 299 - 299 aa - 299 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.4640+/-0.000529; mu= -6.2669+/- 0.032
 mean_var=274.6747+/-57.211, 0's: 0 Z-trim(113.8): 267  B-trim: 5 in 1/55
 Lambda= 0.077386
 statistics sampled from 23055 (23350) to 23055 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.634), E-opt: 0.2 (0.274), width:  16
 Scan time:  5.700

The best scores are:                                      opt bits E(85289)
NP_058642 (OMIM: 605721) junctional adhesion molec ( 299) 1950 231.5 1.5e-60
NP_067042 (OMIM: 606870) junctional adhesion molec ( 298)  563 76.7 6.3e-14
NP_116190 (OMIM: 606871,613730) junctional adhesio ( 310)  549 75.1 1.9e-13
NP_001257337 (OMIM: 606870) junctional adhesion mo ( 312)  528 72.8 9.7e-13
NP_001257336 (OMIM: 606870) junctional adhesion mo ( 262)  519 71.7 1.7e-12
NP_001192258 (OMIM: 606871,613730) junctional adhe ( 259)  372 55.3 1.5e-07
NP_005805 (OMIM: 602171) cell surface A33 antigen  ( 319)  267 43.7 0.00059
NP_001316849 (OMIM: 606011) V-set and immunoglobul ( 284)  264 43.3 0.00068
NP_055127 (OMIM: 606011) V-set and immunoglobulin  ( 327)  264 43.3 0.00075
XP_016855494 (OMIM: 602171) PREDICTED: cell surfac ( 211)  236 40.0  0.0048


>>NP_058642 (OMIM: 605721) junctional adhesion molecule   (299 aa)
 initn: 1950 init1: 1950 opt: 1950  Z-score: 1207.9  bits: 231.5 E(85289): 1.5e-60
Smith-Waterman score: 1950; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)

               10        20        30        40        50        60
pF1KB4 MGTKAQVERKLLCLFILAILLCSLALGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_058 MGTKAQVERKLLCLFILAILLCSLALGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 EWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_058 EWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 EVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_058 EVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKST
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 RAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVERNVGVIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_058 RAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVERNVGVIV
              190       200       210       220       230       240

              250       260       270       280       290         
pF1KB4 AAVLVTLILLGILVFGIWFAYSRGHFDRTKKGTSSKKVIYSQPSARSEGEFKQTSSFLV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_058 AAVLVTLILLGILVFGIWFAYSRGHFDRTKKGTSSKKVIYSQPSARSEGEFKQTSSFLV
              250       260       270       280       290         

>>NP_067042 (OMIM: 606870) junctional adhesion molecule   (298 aa)
 initn: 417 init1: 319 opt: 563  Z-score: 371.1  bits: 76.7 E(85289): 6.3e-14
Smith-Waterman score: 563; 35.2% identity (64.5% similar) in 301 aa overlap (5-299:2-298)

               10        20        30           40        50       
pF1KB4 MGTKAQVERKLLCLFILAILLCSLALGSVTVHSSEPE---VRIPENNPVKLSCAYSGFS-
           :.  :. : :..:  :. .:.  ..   :.  .   :   : . . :.:     . 
NP_067    MARRSRHRLLLLLLRYLVVALGYHKAYGFSAPKDQQVVTAVEYQEAILACKTPKKTV
                  10        20        30        40        50       

         60        70        80        90       100       110      
pF1KB4 SPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSE--E
       : :.:::   : .. .: :.. . .....:. ..  .: .:.::: :.: : : ::   :
NP_067 SSRLEWK-KLGRSVSFVYYQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSE
        60         70        80        90       100       110      

          120       130       140       150       160       170    
pF1KB4 GGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMP
        :..  :  : : ::: :. :. ..::::  :. . : :....:.:  ::::::::: . 
NP_067 QGQNLEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRLL
        120       130       140       150       160       170      

          180       190       200       210       220       230    
pF1KB4 TNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVER
        ::.     .::::..:  :: : :. .:  :::::::::::. :     .  ::.. . 
NP_067 ENPRLGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGK-RMQVDDL
        180       190       200       210       220        230     

          240       250       260       270       280       290    
pF1KB4 NVGVIVAAVLVTLILLGILVFGIWFAYSRGHFDRTKKGTSSKKVIYSQPSARSEGEFKQT
       :.. :.:::.:. .....  .:. .:  .:.:  .:. . .:.   :. .. ::..::.:
NP_067 NISGIIAAVVVVALVISVCGLGVCYAQRKGYF--SKETSFQKSNSSSKATTMSENDFKHT
         240       250       260         270       280       290   

            
pF1KB4 SSFLV
       .::..
NP_067 KSFII
            

>>NP_116190 (OMIM: 606871,613730) junctional adhesion mo  (310 aa)
 initn: 374 init1: 129 opt: 549  Z-score: 362.4  bits: 75.1 E(85289): 1.9e-13
Smith-Waterman score: 549; 33.6% identity (65.1% similar) in 295 aa overlap (15-299:18-310)

                  10        20        30        40        50       
pF1KB4    MGTKAQVERKLLCLFILAILLCSLALGSVTVHSSEPEVRIPENNPVKLSCAY--SGF
                        :.: .:. .  .:.:...::.    . : . :.:::    :  
NP_116 MALRRPPRLRLCARLPDFFLLLLFRGCLIGAVNLKSSNRTPVVQEFESVELSCIITDSQT
               10        20        30        40        50        60

          60        70        80        90        100        110   
pF1KB4 SSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL-PTGITFKSVTREDTGTYTC-MVSE
       :.::.:::  : . :  : ..::: ..   :. .:  :.. . .:::.:.. : : .:..
NP_116 SDPRIEWKKIQDEQTTYVFFDNKIQGDLAGRAEILGKTSLKIWNVTRRDSALYRCEVVAR
               70        80        90       100       110       120

           120       130       140       150       160       170   
pF1KB4 EGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVM
       .  .   :. ..: : : :  :.  .:... .:. :.: :.:..: :  .:.:... . .
NP_116 NDRKEIDEIVIELTVQVKPVTPVCRVPKAVPVGKMATLHCQESEGHPRPHYSWYRNDVPL
              130       140       150       160       170       180

           180       190       200       210       220       230   
pF1KB4 PTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVE
       ::. ...  : :::. ::  :: :::  .  .:.:.: : : :  :.    .  .::. .
NP_116 PTDSRANPRFRNSSFHLNSETGTLVFTAVHKDDSGQYYCIASNDAGSARCEEQ-EMEVYD
              190       200       210       220       230          

           240       250       260       270       280             
pF1KB4 RNVGVIVAAVLVTLILLGILVFGIWFAYSRGHFDRTKKGTSSKKVIYSQPSA----RS--
        :.: :...:::.: .:.....::  :: ::.:  .:.   : :   ..:..    :.  
NP_116 LNIGGIIGGVLVVLAVLALITLGICCAYRRGYFINNKQDGESYKNP-GKPDGVNYIRTDE
     240       250       260       270       280        290        

       290         
pF1KB4 EGEFKQTSSFLV
       ::.:.. :::..
NP_116 EGDFRHKSSFVI
      300       310

>>NP_001257337 (OMIM: 606870) junctional adhesion molecu  (312 aa)
 initn: 379 init1: 319 opt: 528  Z-score: 349.7  bits: 72.8 E(85289): 9.7e-13
Smith-Waterman score: 528; 35.9% identity (63.8% similar) in 290 aa overlap (5-282:2-287)

               10        20        30             40        50     
pF1KB4 MGTKAQVERKLLCLFILAILLCSLALGSVTVHS-SEPE----VRIPENNPVKLSCAYSGF
           :.  :. : :..:  :.  .:::   ... : :.    :   : . . :.:     
NP_001    MARRSRHRLLLLLLRYLV--VALGYHKAYGFSAPKDQQVVTAVEYQEAILACKTPKK
                  10          20        30        40        50     

           60        70        80        90       100       110    
pF1KB4 S-SPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSE-
       . : :.:::   : .. .: :.. . .....:. ..  .: .:.::: :.: : : ::  
NP_001 TVSSRLEWK-KLGRSVSFVYYQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAP
          60         70        80        90       100       110    

            120       130       140       150       160       170  
pF1KB4 -EGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIV
        : :..  :  : : ::: :. :. ..::::  :. . : :....:.:  ::::::::: 
NP_001 SEQGQNLEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIR
          120       130       140       150       160       170    

            180       190       200       210       220       230  
pF1KB4 MPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV
       .  ::.     .::::..:  :: : :. .:  :::::::::::. :     .  ::.. 
NP_001 LLENPRLGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGK-RMQVD
          180       190       200       210       220        230   

            240       250       260           270       280        
pF1KB4 ERNVGVIVAAVLVTLILLGILVFGIWFAYSRGHFDRT----KKGTSSKKVIYSQPSARSE
       . :.. :.:::.:. .....  .:. .:  .:.:..     :...::: . .:.      
NP_001 DLNISGIIAAVVVVALVISVCGLGVCYAQRKGYFSKETSFQKSNSSSKATTMSENVQWLT
           240       250       260       270       280       290   

      290                 
pF1KB4 GEFKQTSSFLV        
                          
NP_001 PVIPALWKAAAGGSRGQEF
           300       310  

>>NP_001257336 (OMIM: 606870) junctional adhesion molecu  (262 aa)
 initn: 392 init1: 319 opt: 519  Z-score: 345.2  bits: 71.7 E(85289): 1.7e-12
Smith-Waterman score: 520; 38.2% identity (66.9% similar) in 251 aa overlap (51-299:26-262)

               30        40        50        60        70        80
pF1KB4 LCSLALGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKIT
                                     :: :::.:.     :: ...  : :..   
NP_001      MARRSRHRLLLLLLRYLVVALGYHKAY-GFSAPK-----DQ-QVVTAVEYQG---
                    10        20         30              40        

               90       100       110         120       130        
pF1KB4 ASYEDRVTFLPTGITFKSVTREDTGTYTCMVSE--EGGNSYGEVKVKLIVLVPPSKPTVN
        ....:. ..  .: .:.::: :.: : : ::   : :..  :  : : ::: :. :. .
NP_001 -DFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQNLEEDTVTLEVLVAPAVPSCE
           50        60        70        80        90       100    

      140       150       160       170       180       190        
pF1KB4 IPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELV
       .::::  :. . : :....:.:  ::::::::: .  ::.     .::::..:  :: : 
NP_001 VPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRLLENPRLGSQSTNSSYTMNTKTGTLQ
          110       120       130       140       150       160    

      200       210       220       230       240       250        
pF1KB4 FDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVERNVGVIVAAVLVTLILLGILVFGIW
       :. .:  :::::::::::. :     .  ::.. . :.. :.:::.:. .....  .:. 
NP_001 FNTVSKLDTGEYSCEARNSVGYRRCPGK-RMQVDDLNISGIIAAVVVVALVISVCGLGVC
          170       180       190        200       210       220   

      260       270       280       290         
pF1KB4 FAYSRGHFDRTKKGTSSKKVIYSQPSARSEGEFKQTSSFLV
       .:  .:.:  .:. . .:.   :. .. ::..::.:.::..
NP_001 YAQRKGYF--SKETSFQKSNSSSKATTMSENDFKHTKSFII
           230         240       250       260  

>>NP_001192258 (OMIM: 606871,613730) junctional adhesion  (259 aa)
 initn: 391 init1: 129 opt: 372  Z-score: 256.6  bits: 55.3 E(85289): 1.5e-07
Smith-Waterman score: 389; 29.4% identity (54.6% similar) in 293 aa overlap (15-299:18-259)

                  10        20        30        40        50       
pF1KB4    MGTKAQVERKLLCLFILAILLCSLALGSVTVHSSEPEVRIPENNPVKLSCAY--SGF
                        :.: .:. .  .:.:...::.    . : . :.:::    :  
NP_001 MALRRPPRLRLCARLPDFFLLLLFRGCLIGAVNLKSSNRTPVVQEFESVELSCIITDSQT
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB4 SSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEG
       :.::.:::  : . :  : ..:::                                    
NP_001 SDPRIEWKKIQDEQTTYVFFDNKIQ-----------------------------------
               70        80                                        

         120       130       140       150       160       170     
pF1KB4 GNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPT
                     : :  :.  .:... .:. :.: :.:..: :  .:.:... . .::
NP_001 --------------VKPVTPVCRVPKAVPVGKMATLHCQESEGHPRPHYSWYRNDVPLPT
                        90       100       110       120       130 

         180       190       200       210       220       230     
pF1KB4 NPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVERN
       . ...  : :::. ::  :: :::  .  .:.:.: : : :  :.    .  .::. . :
NP_001 DSRANPRFRNSSFHLNSETGTLVFTAVHKDDSGQYYCIASNDAGSARCEEQ-EMEVYDLN
             140       150       160       170       180        190

         240       250       260       270       280               
pF1KB4 VGVIVAAVLVTLILLGILVFGIWFAYSRGHFDRTKKGTSSKKVIYSQPSA----RS--EG
       .: :...:::.: .:.....::  :: ::.:  .:.   : :   ..:..    :.  ::
NP_001 IGGIIGGVLVVLAVLALITLGICCAYRRGYFINNKQDGESYKNP-GKPDGVNYIRTDEEG
              200       210       220       230        240         

     290         
pF1KB4 EFKQTSSFLV
       .:.. :::..
NP_001 DFRHKSSFVI
     250         

>>NP_005805 (OMIM: 602171) cell surface A33 antigen prec  (319 aa)
 initn: 223 init1: 153 opt: 267  Z-score: 192.1  bits: 43.7 E(85289): 0.00059
Smith-Waterman score: 330; 28.0% identity (58.5% similar) in 289 aa overlap (21-283:12-284)

               10        20          30        40        50        
pF1KB4 MGTKAQVERKLLCLFILAILLCSL--ALGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSP
                           ::..  .. ...:.. .  .:  ... : : :.:   .: 
NP_005          MVGKMWPVLWTLCAVRVTVDAISVETPQDVLRASQGKSVTLPCTYHTSTSS
                        10        20        30        40        50 

          60         70          80           90             100   
pF1KB4 R---VEW-KFDQGDTTRLVC--YNNKITAS---YEDRVTFL------PTGITFKSVTRED
       :   ..: :.    : :.:   ..::       :..::..        ..::. ..:  :
NP_005 REGLIQWDKLLLTHTERVVIWPFSNKNYIHGELYKNRVSISNNAEQSDASITIDQLTMAD
              60        70        80        90       100       110 

              110       120       130       140       150       160
pF1KB4 TGTYTC---MVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSP
       .::: :   ..:.  ::.  . .:.:.::::::::  .: . . :::   :::. ..:::
NP_005 NGTYECSVSLMSDLEGNT--KSRVRLLVLVPPSKPECGIEGETIIGNNIQLTCQSKEGSP
             120         130       140       150       160         

              170       180       190        200       210         
pF1KB4 PSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELV-FDPLSASDTGEYSCEARNGYG
         .:.: . .:.   .:           . .:..:. : .  .:.. .: : : . :  :
NP_005 TPQYSWKRYNILNQEQP-----------LAQPASGQPVSLKNISTDTSGYYICTSSNEEG
     170       180                  190       200       210        

     220       230          240       250       260         270    
pF1KB4 TPMTSNAVRMEAVERNVGV---IVAAVLVTLILLGILVFGIWFAYSRGHFDRT--KKGTS
       : . . .: ...   ::..   :...:...::..::...       ::. : :  :. . 
NP_005 TQFCNITVAVRSPSMNVALYVGIAVGVVAALIIIGIIIY---CCCCRGKDDNTEDKEDAR
      220       230       240       250          260       270     

          280       290                            
pF1KB4 SKKVIYSQPSARSEGEFKQTSSFLV                   
        ..  : .:                                   
NP_005 PNREAYEEPPEQLRELSREREEEDDYRQEEQRSTGRESPDHLDQ
         280       290       300       310         

>>NP_001316849 (OMIM: 606011) V-set and immunoglobulin d  (284 aa)
 initn: 169 init1: 100 opt: 264  Z-score: 190.9  bits: 43.3 E(85289): 0.00068
Smith-Waterman score: 316; 29.7% identity (60.5% similar) in 286 aa overlap (5-271:2-273)

               10        20        30        40        50          
pF1KB4 MGTKAQVERKLLCLFILAILLCSLALGSVTVHSSEPEVRIPENNPVKLSCAYSGF--SSP
           :..   .::  .:. .::  .:.  .   .:: .  : .. ..:.:.::    .: 
NP_001    MAELPGPFLCGALLG-FLCLSGLAVEVKVPTEP-LSTPLGKTAELTCTYSTSVGDSF
                  10         20        30         40        50     

       60             70           80        90              100   
pF1KB4 RVEWKFDQ-----GDTTRLVCYNNK---ITASYEDRVTFL---PT-GI-TFK--SVTRED
        .::.: :     ...  .. ..:     :.:   ::..:   :: :. :.:  .:   :
NP_001 ALEWSFVQPGKPISESHPILYFTNGHLYPTGSKSKRVSLLQNPPTVGVATLKLTDVHPSD
          60        70        80        90       100       110     

           110        120       130       140       150       160  
pF1KB4 TGTYTCMVSEEGG-NSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPS
       :::: :.:..     . :   ..: ::::::.:  .  .....:. ..: :: ..:.:  
NP_001 TGTYLCQVNNPPDFYTNGLGLINLTVLVPPSNPLCSQSGQTSVGGSTALRCSSSEGAPKP
         120       130       140       150       160       170     

            170       180       190       200       210       220  
pF1KB4 EYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPM
        :.: . : ..:: :      : .:.: . ..:.:..  :: ...: : : : : .:.  
NP_001 VYNWVRLG-TFPT-P------SPGSMVQDEVSGQLILTNLSLTSSGTYRCVATNQMGS--
         180               190       200       210       220       

            230       240       250        260       270       280 
pF1KB4 TSNAVRMEAVERNVGVIVAAVLVTLILLGILVFGIW-FAYSRGHFDRTKKGTSSKKVIYS
       .:  . . ..: . : ...:..   .:::.:....  :   : . .: ::          
NP_001 ASCELTLSVTEPSQGRVAGALIG--VLLGVLLLSVAAFCLVRFQKERGKKPKETYGGSDL
         230       240         250       260       270       280   

             290         
pF1KB4 QPSARSEGEFKQTSSFLV
                         
NP_001 R                 
                         

>>NP_055127 (OMIM: 606011) V-set and immunoglobulin doma  (327 aa)
 initn: 169 init1: 100 opt: 264  Z-score: 190.1  bits: 43.3 E(85289): 0.00075
Smith-Waterman score: 316; 29.7% identity (60.5% similar) in 286 aa overlap (5-271:2-273)

               10        20        30        40        50          
pF1KB4 MGTKAQVERKLLCLFILAILLCSLALGSVTVHSSEPEVRIPENNPVKLSCAYSGF--SSP
           :..   .::  .:. .::  .:.  .   .:: .  : .. ..:.:.::    .: 
NP_055    MAELPGPFLCGALLG-FLCLSGLAVEVKVPTEP-LSTPLGKTAELTCTYSTSVGDSF
                  10         20        30         40        50     

       60             70           80        90              100   
pF1KB4 RVEWKFDQ-----GDTTRLVCYNNK---ITASYEDRVTFL---PT-GI-TFK--SVTRED
        .::.: :     ...  .. ..:     :.:   ::..:   :: :. :.:  .:   :
NP_055 ALEWSFVQPGKPISESHPILYFTNGHLYPTGSKSKRVSLLQNPPTVGVATLKLTDVHPSD
          60        70        80        90       100       110     

           110        120       130       140       150       160  
pF1KB4 TGTYTCMVSEEGG-NSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPS
       :::: :.:..     . :   ..: ::::::.:  .  .....:. ..: :: ..:.:  
NP_055 TGTYLCQVNNPPDFYTNGLGLINLTVLVPPSNPLCSQSGQTSVGGSTALRCSSSEGAPKP
         120       130       140       150       160       170     

            170       180       190       200       210       220  
pF1KB4 EYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPM
        :.: . : ..:: :      : .:.: . ..:.:..  :: ...: : : : : .:.  
NP_055 VYNWVRLG-TFPT-P------SPGSMVQDEVSGQLILTNLSLTSSGTYRCVATNQMGS--
         180               190       200       210       220       

            230       240       250        260       270       280 
pF1KB4 TSNAVRMEAVERNVGVIVAAVLVTLILLGILVFGIW-FAYSRGHFDRTKKGTSSKKVIYS
       .:  . . ..: . : ...:..   .:::.:....  :   : . .: ::          
NP_055 ASCELTLSVTEPSQGRVAGALIG--VLLGVLLLSVAAFCLVRFQKERGKKPKETYGGSDL
         230       240         250       260       270       280   

             290                                   
pF1KB4 QPSARSEGEFKQTSSFLV                          
                                                   
NP_055 REDAIAPGISEHTCMRADSSKGFLERPSSASTVTTTKSKLPMVV
           290       300       310       320       

>>XP_016855494 (OMIM: 602171) PREDICTED: cell surface A3  (211 aa)
 initn: 211 init1: 153 opt: 236  Z-score: 175.7  bits: 40.0 E(85289): 0.0048
Smith-Waterman score: 272; 30.5% identity (60.5% similar) in 190 aa overlap (103-283:3-176)

             80        90       100          110       120         
pF1KB4 VCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTC---MVSEEGGNSYGEVKVKLIVL
                                     :.::: :   ..:.  ::.  . .:.:.::
XP_016                             MADNGTYECSVSLMSDLEGNT--KSRVRLLVL
                                           10        20          30

     130       140       150       160       170       180         
pF1KB4 VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYV
       ::::::  .: . . :::   :::. ..:::  .:.: . .:.   .:           .
XP_016 VPPSKPECGIEGETIIGNNIQLTCQSKEGSPTPQYSWKRYNILNQEQP-----------L
               40        50        60        70                    

     190        200       210       220       230          240     
pF1KB4 LNPTTGELV-FDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVERNVGV---IVAAVLV
        .:..:. : .  .:.. .: : : . :  :: . . .: ...   ::..   :...:..
XP_016 AQPASGQPVSLKNISTDTSGYYICTSSNEEGTQFCNITVAVRSPSMNVALYVGIAVGVVA
      80        90       100       110       120       130         

         250       260         270       280       290             
pF1KB4 TLILLGILVFGIWFAYSRGHFDRT--KKGTSSKKVIYSQPSARSEGEFKQTSSFLV    
       .::..::...       ::. : :  :. .  ..  : .:                    
XP_016 ALIIIGIIIY---CCCCRGKDDNTEDKEDARPNREAYEEPPEQLRELSREREEEDDYRQE
     140          150       160       170       180       190      

XP_016 EQRSTGRESPDHLDQ
        200       210 




299 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:49:52 2016 done: Fri Nov  4 20:49:52 2016
 Total Scan time:  5.700 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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